LOCUS       NM_001372473            1529 bp    mRNA    linear   ROD 06-AUG-2023
DEFINITION  Mus musculus single stranded DNA binding protein 4 (Ssbp4),
            transcript variant 6, mRNA.
ACCESSION   NM_001372473 XM_006509795
VERSION     NM_001372473.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1529)
  AUTHORS   Lee B, Lee S, Agulnick AD, Lee JW and Lee SK.
  TITLE     Single-stranded DNA binding proteins are required for LIM complexes
            to induce transcriptionally active chromatin and specify spinal
            neuronal identities
  JOURNAL   Development 143 (10), 1721-1731 (2016)
   PUBMED   26965372
REFERENCE   2  (bases 1 to 1529)
  AUTHORS   Lumayag S, Haldin CE, Corbett NJ, Wahlin KJ, Cowan C, Turturro S,
            Larsen PE, Kovacs B, Witmer PD, Valle D, Zack DJ, Nicholson DA and
            Xu S.
  TITLE     Inactivation of the microRNA-183/96/182 cluster results in
            syndromic retinal degeneration
  JOURNAL   Proc Natl Acad Sci U S A 110 (6), E507-E516 (2013)
   PUBMED   23341629
REFERENCE   3  (bases 1 to 1529)
  AUTHORS   Ravasi T, Suzuki H, Cannistraci CV, Katayama S, Bajic VB, Tan K,
            Akalin A, Schmeier S, Kanamori-Katayama M, Bertin N, Carninci P,
            Daub CO, Forrest AR, Gough J, Grimmond S, Han JH, Hashimoto T, Hide
            W, Hofmann O, Kamburov A, Kaur M, Kawaji H, Kubosaki A, Lassmann T,
            van Nimwegen E, MacPherson CR, Ogawa C, Radovanovic A, Schwartz A,
            Teasdale RD, Tegner J, Lenhard B, Teichmann SA, Arakawa T, Ninomiya
            N, Murakami K, Tagami M, Fukuda S, Imamura K, Kai C, Ishihara R,
            Kitazume Y, Kawai J, Hume DA, Ideker T and Hayashizaki Y.
  TITLE     An atlas of combinatorial transcriptional regulation in mouse and
            man
  JOURNAL   Cell 140 (5), 744-752 (2010)
   PUBMED   20211142
  REMARK    Erratum:[Cell. 2010 Apr 16;141(2):369. Kamburov, Atanas [added];
            Kaur, Mandeep [added]; MacPherson, Cameron Ross [added];
            Radovanovic, Aleksandar [added]; Schwartz, Ariel [added]]
REFERENCE   4  (bases 1 to 1529)
  AUTHORS   Yokoyama S, Ito Y, Ueno-Kudoh H, Shimizu H, Uchibe K, Albini S,
            Mitsuoka K, Miyaki S, Kiso M, Nagai A, Hikata T, Osada T, Fukuda N,
            Yamashita S, Harada D, Mezzano V, Kasai M, Puri PL, Hayashizaki Y,
            Okado H, Hashimoto M and Asahara H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   5  (bases 1 to 1529)
  AUTHORS   Mozhui K, Hamre KM, Holmes A, Lu L and Williams RW.
  TITLE     Genetic and structural analysis of the basolateral amygdala complex
            in BXD recombinant inbred mice
  JOURNAL   Behav Genet 37 (1), 223-243 (2007)
   PUBMED   17131200
REFERENCE   6  (bases 1 to 1529)
  AUTHORS   Corbo JC and Cepko CL.
  TITLE     A hybrid photoreceptor expressing both rod and cone genes in a
            mouse model of enhanced S-cone syndrome
  JOURNAL   PLoS Genet 1 (2), e11 (2005)
   PUBMED   16110338
  REMARK    Erratum:[PLoS Genet. 2008 Jan;4(1):e18]
REFERENCE   7  (bases 1 to 1529)
  AUTHORS   Blackshaw S, Harpavat S, Trimarchi J, Cai L, Huang H, Kuo WP, Weber
            G, Lee K, Fraioli RE, Cho SH, Yung R, Asch E, Ohno-Machado L, Wong
            WH and Cepko CL.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
REFERENCE   8  (bases 1 to 1529)
  AUTHORS   Wertz K and Herrmann BG.
  TITLE     Large-scale screen for genes involved in gonad development
  JOURNAL   Mech Dev 98 (1-2), 51-70 (2000)
   PUBMED   11044607
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC157774.5.
            
            On Sep 3, 2019 this sequence version replaced XM_006509795.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7345562.2635461.1,
                                           SRR13422590.73071.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on manual assertion, conservation
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-190               AC157774.5         39586-39775
            191-263             AC157774.5         45254-45326
            264-325             AC157774.5         45438-45499
            326-410             AC157774.5         45584-45668
            411-500             AC157774.5         47415-47504
            501-554             AC157774.5         47838-47891
            555-614             AC157774.5         48001-48060
            615-684             AC157774.5         48143-48212
            685-755             AC157774.5         48305-48375
            756-826             AC157774.5         48456-48526
            827-872             AC157774.5         48737-48782
            873-908             AC157774.5         48872-48907
            909-963             AC157774.5         48992-49046
            964-1034            AC157774.5         49128-49198
            1035-1113           AC157774.5         49283-49361
            1114-1142           AC157774.5         49666-49694
            1143-1250           AC157774.5         49780-49887
            1251-1529           AC157774.5         50132-50410
FEATURES             Location/Qualifiers
     source          1..1529
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 34.15 cM"
     gene            1..1529
                     /gene="Ssbp4"
                     /gene_synonym="1210002E11Rik; Ssdp4; Sspb4"
                     /note="single stranded DNA binding protein 4"
                     /db_xref="GeneID:76900"
                     /db_xref="MGI:MGI:1924150"
     exon            1..190
                     /gene="Ssbp4"
                     /gene_synonym="1210002E11Rik; Ssdp4; Sspb4"
                     /inference="alignment:Splign:2.1.0"
     exon            191..263
                     /gene="Ssbp4"
                     /gene_synonym="1210002E11Rik; Ssdp4; Sspb4"
                     /inference="alignment:Splign:2.1.0"
     exon            264..325
                     /gene="Ssbp4"
                     /gene_synonym="1210002E11Rik; Ssdp4; Sspb4"
                     /inference="alignment:Splign:2.1.0"
     exon            326..410
                     /gene="Ssbp4"
                     /gene_synonym="1210002E11Rik; Ssdp4; Sspb4"
                     /inference="alignment:Splign:2.1.0"
     exon            411..500
                     /gene="Ssbp4"
                     /gene_synonym="1210002E11Rik; Ssdp4; Sspb4"
                     /inference="alignment:Splign:2.1.0"
     exon            501..554
                     /gene="Ssbp4"
                     /gene_synonym="1210002E11Rik; Ssdp4; Sspb4"
                     /inference="alignment:Splign:2.1.0"
     exon            555..614
                     /gene="Ssbp4"
                     /gene_synonym="1210002E11Rik; Ssdp4; Sspb4"
                     /inference="alignment:Splign:2.1.0"
     exon            615..684
                     /gene="Ssbp4"
                     /gene_synonym="1210002E11Rik; Ssdp4; Sspb4"
                     /inference="alignment:Splign:2.1.0"
     exon            685..755
                     /gene="Ssbp4"
                     /gene_synonym="1210002E11Rik; Ssdp4; Sspb4"
                     /inference="alignment:Splign:2.1.0"
     exon            756..826
                     /gene="Ssbp4"
                     /gene_synonym="1210002E11Rik; Ssdp4; Sspb4"
                     /inference="alignment:Splign:2.1.0"
     exon            827..872
                     /gene="Ssbp4"
                     /gene_synonym="1210002E11Rik; Ssdp4; Sspb4"
                     /inference="alignment:Splign:2.1.0"
     exon            873..908
                     /gene="Ssbp4"
                     /gene_synonym="1210002E11Rik; Ssdp4; Sspb4"
                     /inference="alignment:Splign:2.1.0"
     exon            909..963
                     /gene="Ssbp4"
                     /gene_synonym="1210002E11Rik; Ssdp4; Sspb4"
                     /inference="alignment:Splign:2.1.0"
     exon            964..1034
                     /gene="Ssbp4"
                     /gene_synonym="1210002E11Rik; Ssdp4; Sspb4"
                     /inference="alignment:Splign:2.1.0"
     exon            1035..1113
                     /gene="Ssbp4"
                     /gene_synonym="1210002E11Rik; Ssdp4; Sspb4"
                     /inference="alignment:Splign:2.1.0"
     exon            1114..1142
                     /gene="Ssbp4"
                     /gene_synonym="1210002E11Rik; Ssdp4; Sspb4"
                     /inference="alignment:Splign:2.1.0"
     exon            1143..1250
                     /gene="Ssbp4"
                     /gene_synonym="1210002E11Rik; Ssdp4; Sspb4"
                     /inference="alignment:Splign:2.1.0"
     exon            1251..1529
                     /gene="Ssbp4"
                     /gene_synonym="1210002E11Rik; Ssdp4; Sspb4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcgcgcttc ccggaacagc ccggggaggg cagcgcggcg agaacccacc cgcggccgga
       61 gctcccgcgc ggacatggcc gcggggatcg gggcgcgggc agcgatggcc acgcgcgcct
      121 gacaggtgcg gagcatgtac ggcaaggcga gcaagggctg cgcgccctcg gacgggcagg
      181 cgcgcgagaa gctcgcgctg tatgtatatg agtatctact gcatgtgggg gcacagaagt
      241 cggcgcagac cttcctgtct gagatccgtt gggaaaagaa catcacattg ggtgagcctc
      301 ctggcttcct gcactcctgg tggtgcgtct tctgggacct gtattgtgcg gcaccagacc
      361 gcagggaggc ctgtgaacac tccagtgagg ccaaagtctt ccaggactat agcgcagcag
      421 cagctcccag ccctgtgatg ggtgccatga ccccaaacga tgcaatggca gcaggccctg
      481 tggcaccagg cttcttccag ctgtgccagc tgactgtggt ctgcagtctg gatctgcagc
      541 aggggactag caagcccttc atgtcaccac ggttcccagg gggtgcccgc ccaatcctaa
      601 ggatgccagg ccagcctcct gtgggcctcc ctggctccca gcccctcatc cccgctgcca
      661 tggacccctc cccacgagtg cagggacacc ccagcctggg aggcccgatg cagagggtga
      721 cccctccaag aggaatggcc agtgttgggc cccagggcta tggaactggc atgcggcccc
      781 cacccaactc ccttgccacc agccaggtcc tgccgtccat gaacatgggt ccaggagtgc
      841 gtggcccatg ggccagtccc agcggtaact cgatcccgta ctcttcctca tctcctggca
      901 gctactcggg acccgcagga ggaggcggag cccctggaac acccatcatg cccagccctg
      961 gagactccac caactccagc gagaatatgt acaccatcat gaatcccatc gggccgggcg
     1021 ctggcagggc taacttcccg ctcggcccca gcccggaggg cccaatggcc tcaatgagca
     1081 cgatggagcc acaccacgtg aacggatccc tgggctcggg cgatatggac gggctgccga
     1141 agaattcccc cggcgccgtg ggcggcctga gcaacgcccc ggggaccccg cgcgacgatg
     1201 gcgagatggc ggctgccggg accttcctgc acccgttccc gagcgaaagc tactcccccg
     1261 gcatgaccat gagcgtgtga tagtcccggc ctgagcccag ggtcctgctg gtgaggtctc
     1321 ggtcgcggca gcacccctgc catccggact cctggctagc ccggccggcc ggcagggccc
     1381 ccacgaagga cttttatcat tttctaaaca cacatataca cacacaaact caaaaggacc
     1441 tcagagaagt gcaggcctct ggacctctgt gcacacaagg ctggggggtg ggggcagggg
     1501 ttctgccaat aaatgccatt ccgttttga
//
