LOCUS       NM_016799               3663 bp    mRNA    linear   ROD 08-JUN-2024
DEFINITION  Mus musculus serine/arginine repetitive matrix 1 (Srrm1),
            transcript variant 1, mRNA.
ACCESSION   NM_016799
VERSION     NM_016799.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3663)
  AUTHORS   Thoren,L.A., Norgaard,G.A., Weischenfeldt,J., Waage,J.,
            Jakobsen,J.S., Damgaard,I., Bergstrom,F.C., Blom,A.M., Borup,R.,
            Bisgaard,H.C. and Porse,B.T.
  TITLE     UPF2 is a critical regulator of liver development, function and
            regeneration
  JOURNAL   PLoS One 5 (7), e11650 (2010)
   PUBMED   20657840
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3663)
  AUTHORS   Combes,A.N., Lesieur,E., Harley,V.R., Sinclair,A.H., Little,M.H.,
            Wilhelm,D. and Koopman,P.
  TITLE     Three-dimensional visualization of testis cord morphogenesis, a
            novel tubulogenic mechanism in development
  JOURNAL   Dev Dyn 238 (5), 1033-1041 (2009)
   PUBMED   19334288
REFERENCE   3  (bases 1 to 3663)
  AUTHORS   Hoffman,B.G., Zavaglia,B., Witzsche,J., Ruiz de Algara,T.,
            Beach,M., Hoodless,P.A., Jones,S.J., Marra,M.A. and Helgason,C.D.
  TITLE     Identification of transcripts with enriched expression in the
            developing and adult pancreas
  JOURNAL   Genome Biol 9 (6), R99 (2008)
   PUBMED   18554416
REFERENCE   4  (bases 1 to 3663)
  AUTHORS   Munton,R.P., Tweedie-Cullen,R., Livingstone-Zatchej,M.,
            Weinandy,F., Waidelich,M., Longo,D., Gehrig,P., Potthast,F.,
            Rutishauser,D., Gerrits,B., Panse,C., Schlapbach,R. and Mansuy,I.M.
  TITLE     Qualitative and quantitative analyses of protein phosphorylation in
            naive and stimulated mouse synaptosomal preparations
  JOURNAL   Mol Cell Proteomics 6 (2), 283-293 (2007)
   PUBMED   17114649
REFERENCE   5  (bases 1 to 3663)
  AUTHORS   McKee,A.E., Minet,E., Stern,C., Riahi,S., Stiles,C.D. and
            Silver,P.A.
  TITLE     A genome-wide in situ hybridization map of RNA-binding proteins
            reveals anatomically restricted expression in the developing mouse
            brain
  JOURNAL   BMC Dev Biol 5, 14 (2005)
   PUBMED   16033648
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 3663)
  AUTHORS   Cobellis,G., Nicolaus,G., Iovino,M., Romito,A., Marra,E.,
            Barbarisi,M., Sardiello,M., Di Giorgio,F.P., Iovino,N., Zollo,M.,
            Ballabio,A. and Cortese,R.
  TITLE     Tagging genes with cassette-exchange sites
  JOURNAL   Nucleic Acids Res 33 (4), e44 (2005)
   PUBMED   15741177
  REMARK    Publication Status: Online-Only
REFERENCE   7  (bases 1 to 3663)
  AUTHORS   Ballif,B.A., Villen,J., Beausoleil,S.A., Schwartz,D. and Gygi,S.P.
  TITLE     Phosphoproteomic analysis of the developing mouse brain
  JOURNAL   Mol Cell Proteomics 3 (11), 1093-1101 (2004)
   PUBMED   15345747
REFERENCE   8  (bases 1 to 3663)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   9  (bases 1 to 3663)
  AUTHORS   Sutherland,H.G., Mumford,G.K., Newton,K., Ford,L.V., Farrall,R.,
            Dellaire,G., Caceres,J.F. and Bickmore,W.A.
  TITLE     Large-scale identification of mammalian proteins localized to
            nuclear sub-compartments
  JOURNAL   Hum Mol Genet 10 (18), 1995-2011 (2001)
   PUBMED   11555636
REFERENCE   10 (bases 1 to 3663)
  AUTHORS   Blencowe,B.J., Issner,R., Nickerson,J.A. and Sharp,P.A.
  TITLE     A coactivator of pre-mRNA splicing
  JOURNAL   Genes Dev 12 (7), 996-1009 (1998)
   PUBMED   9531537
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL627185.10 and AL627078.10.
            
            On Mar 17, 2019 this sequence version replaced NM_016799.3.
            
            Transcript Variant: This variant (1) represents the longest
            transcript and encodes the longest isoform (1).
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7974084.28185.1,
                                           SRR9219382.167092.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164140 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-50                AL627185.10        14525-14574         c
            51-140              AL627185.10        8543-8632           c
            141-263             AL627185.10        8163-8285           c
            264-434             AL627185.10        5927-6097           c
            435-550             AL627185.10        5292-5407           c
            551-754             AL627185.10        3798-4001           c
            755-943             AL627185.10        2275-2463           c
            944-993             AL627185.10        2001-2050           c
            994-1063            AL627078.10        90060-90129         c
            1064-1338           AL627078.10        87361-87635         c
            1339-1419           AL627078.10        81715-81795         c
            1420-1506           AL627078.10        81278-81364         c
            1507-1651           AL627078.10        78930-79074         c
            1652-1693           AL627078.10        78561-78602         c
            1694-1825           AL627078.10        76649-76780         c
            1826-2287           AL627078.10        74376-74837         c
            2288-2483           AL627078.10        73471-73666         c
            2484-2693           AL627078.10        71847-72056         c
            2694-3663           AL627078.10        70042-71011         c
FEATURES             Location/Qualifiers
     source          1..3663
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 67.34 cM"
     gene            1..3663
                     /gene="Srrm1"
                     /gene_synonym="POP101; Srm160"
                     /note="serine/arginine repetitive matrix 1"
                     /db_xref="GeneID:51796"
                     /db_xref="MGI:MGI:1858303"
     exon            1..50
                     /gene="Srrm1"
                     /gene_synonym="POP101; Srm160"
                     /inference="alignment:Splign:2.1.0"
     CDS             30..2801
                     /gene="Srrm1"
                     /gene_synonym="POP101; Srm160"
                     /note="isoform 1 is encoded by transcript variant 1;
                     serine/arginine repetitive matrix protein 1;
                     Ser/Arg-related nuclear matrix protein;
                     plenty-of-prolines-101"
                     /codon_start=1
                     /product="serine/arginine repetitive matrix protein 1
                     isoform 1"
                     /protein_id="NP_058079.2"
                     /db_xref="CCDS:CCDS38919.2"
                     /db_xref="GeneID:51796"
                     /db_xref="MGI:MGI:1858303"
                     /translation="MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVN
                     LEVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFM
                     GELWPLLLSAQENIAGIPSAFLELKKEEIKQRQIEQEKLASLKKQDEDKDKRDKEEKE
                     SSREKRERSRSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKE
                     KSPELPEPSVRMKDSSVQEATSTSDILKAPKPEPVPEPKEPSPEKNSKKEKEKTRPRS
                     RSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPP
                     RHRRSRSPGRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASP
                     PRRRHRPSSPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPS
                     PAPKPRKVELSESEEDKGSKMAAADSVQQRRQYRRQNQQSSSDSGSSSTSEDERPKRS
                     HVKNGEVGRRRRHSPSRSASPSPRKRQKETSPRMQMGKRWQSPVTKSSRRRRSPSPPP
                     ARRRRSPSPAPPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYS
                     PSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPTVTKRRSPSLSSKHRKG
                     SSPGRSTREARSPQPNKRHSPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIR
                     RVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPAAKKPPAPPSPVQSQSPSTNW
                     SPAVPAKKAKSPTPSLSPARNSDQEGGGKKKKKKKDKKHKKDKKHKKHKKHKKEKAVT
                     IATPATAAPAAVSAATTTSAQEEPAAAPEPRKETESEAEDDNLDDLERHLREKALRSM
                     RKAQVSPQS"
     exon            51..140
                     /gene="Srrm1"
                     /gene_synonym="POP101; Srm160"
                     /inference="alignment:Splign:2.1.0"
     exon            141..263
                     /gene="Srrm1"
                     /gene_synonym="POP101; Srm160"
                     /inference="alignment:Splign:2.1.0"
     exon            264..434
                     /gene="Srrm1"
                     /gene_synonym="POP101; Srm160"
                     /inference="alignment:Splign:2.1.0"
     exon            435..550
                     /gene="Srrm1"
                     /gene_synonym="POP101; Srm160"
                     /inference="alignment:Splign:2.1.0"
     exon            551..754
                     /gene="Srrm1"
                     /gene_synonym="POP101; Srm160"
                     /inference="alignment:Splign:2.1.0"
     exon            755..943
                     /gene="Srrm1"
                     /gene_synonym="POP101; Srm160"
                     /inference="alignment:Splign:2.1.0"
     exon            944..1063
                     /gene="Srrm1"
                     /gene_synonym="POP101; Srm160"
                     /inference="alignment:Splign:2.1.0"
     exon            1064..1338
                     /gene="Srrm1"
                     /gene_synonym="POP101; Srm160"
                     /inference="alignment:Splign:2.1.0"
     exon            1339..1419
                     /gene="Srrm1"
                     /gene_synonym="POP101; Srm160"
                     /inference="alignment:Splign:2.1.0"
     exon            1420..1506
                     /gene="Srrm1"
                     /gene_synonym="POP101; Srm160"
                     /inference="alignment:Splign:2.1.0"
     exon            1507..1651
                     /gene="Srrm1"
                     /gene_synonym="POP101; Srm160"
                     /inference="alignment:Splign:2.1.0"
     exon            1652..1693
                     /gene="Srrm1"
                     /gene_synonym="POP101; Srm160"
                     /inference="alignment:Splign:2.1.0"
     exon            1694..1825
                     /gene="Srrm1"
                     /gene_synonym="POP101; Srm160"
                     /inference="alignment:Splign:2.1.0"
     exon            1826..2287
                     /gene="Srrm1"
                     /gene_synonym="POP101; Srm160"
                     /inference="alignment:Splign:2.1.0"
     exon            2288..2483
                     /gene="Srrm1"
                     /gene_synonym="POP101; Srm160"
                     /inference="alignment:Splign:2.1.0"
     exon            2484..2693
                     /gene="Srrm1"
                     /gene_synonym="POP101; Srm160"
                     /inference="alignment:Splign:2.1.0"
     exon            2694..3663
                     /gene="Srrm1"
                     /gene_synonym="POP101; Srm160"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3641..3646
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Srrm1"
                     /gene_synonym="POP101; Srm160"
                     /note="hexamer: AATAAA"
     polyA_site      3659
                     /gene="Srrm1"
                     /gene_synonym="POP101; Srm160"
                     /note="major polyA site"
ORIGIN      
        1 agggagcgat ctccgagcga ggcggcaaga tggacgcggg attcttccgc ggaacaagtg
       61 cggagcagga taatcggttc agcaacaaac agaagaaact cctcaagcag ctgaaatttg
      121 cagaatgctt agaaaaaaag gtggacatga gcaaagtaaa tttggaggtt ataaagcctt
      181 ggataaccaa aagagtaact gagatccttg gattcgaaga tgatgttgtc attgagttta
      241 tattcaacca gctggaagtg aagaacccag attccaaaat gatgcaaatc aacctgactg
      301 ggtttttgaa tgggaagaat gctagagaat tcatgggaga gctgtggccc ctgctgttga
      361 gtgcacaaga aaatatcgcc ggaatccctt ctgctttcct agagttgaag aaggaagaga
      421 taaagcagag acaaattgaa caagaaaaat tggcgtctct gaaaaaacaa gatgaagata
      481 aagataagag ggataaggaa gaaaaggaaa gcagcagaga gaagagggag cggtctcgca
      541 gcccaagaag acgcaaatcc agatctcctt cccctagaag acgatcttcc cctgtcagga
      601 gagagagaaa gcgcagtcac tctcgatctc cccgtcacag aaccaagagc cggagccctt
      661 cccctgcccc agaaaagaag gagaaatctc cagagctccc agagccatcc gtgaggatga
      721 aggactcctc agtacaggag gccacctcta caagtgacat cttgaaagct cccaagcctg
      781 agcctgtacc agagcccaaa gaaccgtctc cagaaaaaaa ttccaaaaag gaaaaggaaa
      841 agactcgacc aagatctcgg tcacgatcca aatctcggtc tcggacccga tctcgatcac
      901 cttctcatac tagaccaaga cggagacata gatcccgatc aagatcatac tctcctagaa
      961 ggcggccaag cccaagacga cgaccatctc cccgaagaag aactccacca agacggatgc
     1021 ctcctccacc aaggcaccgg aggagtaggt ctccagggag acgaaggagg cgttcttccg
     1081 catccctgtc tggaagtagc tcgtcgtcct cttcatctcg ttcccggtca ccaccaaaga
     1141 aacctcccaa gaggacatcc agccctcctc ggaaaacgcg taggttatca ccttcagcaa
     1201 gtcctccacg gcgaagacac cggccgtcat ctccagcaac tccgccaccc aaaactcgcc
     1261 attccccaac tccccagcag tcaaaccgta caagaaaaag tcgtgtttct gtgtctccag
     1321 gaagaacctc cggtaaagtg acaaaacata aaggtactga gaaaagagag tcaccttctc
     1381 cagcacccaa gcctagaaaa gtggagctgt ctgagtctga agaagacaaa ggcagcaaaa
     1441 tggctgcagc tgattctgtg cagcagagaa gacaataccg acggcagaac cagcagtctt
     1501 catctgactc tggctcctct tccacctcag aagatgagcg gcccaagaga tcccatgtaa
     1561 agaacggtga ggtaggcagg cggcggagac attccccttc tcggagtgcc tctccatcac
     1621 ctcgaaagcg ccagaaagag acttcccctc ggatgcagat gggaaagcga tggcagtcac
     1681 cagtgactaa aagtagtaga aggaggagaa gtccctctcc ccctcctgcc agaaggcgaa
     1741 ggtctccttc tccagcccct ccgccgccac ctccccctcc tcctcctcgg cggcgcagat
     1801 ctcccacccc accaccacga cgaaggaccc cttctcctcc cccacgccgc cgctcaccgt
     1861 ctccaagaag atactctcct cccattcaga ggagatactc tccttccccc cctccaaaga
     1921 ggagaaccgc ctcccccccg cccccgccca agcgaagggc atcaccatct ccaccaccaa
     1981 agcgccgggt ctcccactct ccacctccta aacaaagaag ccccacagtc accaagagac
     2041 gctcgccctc cttatcttca aaacatagga aagggtcttc cccaggccga tccacccggg
     2101 aggcccgctc accacaacca aacaaacggc attcgccctc accacggcct cgggctcctc
     2161 agacctcaag ccctccccct gtacgaagag gagcttcagc gtcaccccaa ggaaggcagt
     2221 ccccatctcc aagtactagg cctattagga gagtctccag gaccccggag cccaaaaaga
     2281 taaaaaaggc tgcctcacca agccctcagt ccgtaagaag ggtttcatct tccagatctg
     2341 tctctggatc tcctgagcca gcagctaaaa agccgccagc acctccctct cctgtgcagt
     2401 ctcagtcacc ctccacaaac tggtcacctg cagtaccagc caaaaaggct aagagcccaa
     2461 caccaagcct gtcccctgcc cggaattctg atcaagaagg aggtgggaag aaaaagaaga
     2521 agaagaagga caagaaacac aagaaggata agaaacacaa gaagcacaaa aaacacaaga
     2581 aggagaaggc tgtgaccata gccaccccag ctactgcagc ccctgcagct gtttctgctg
     2641 ccaccaccac atcagcacag gaagagcctg cagcagcacc agagcccagg aaggagactg
     2701 agagtgaagc tgaagatgac aaccttgatg acctagagag gcacctgcgg gagaaggccc
     2761 tgcggtccat gcggaaggct caagtgtccc cacagtccta agcggacatg tttgttatgt
     2821 tgtaaatttt atttggtttg tactcaattc aatttcaaaa ttgctaaaat gtgtttgagc
     2881 tttagactat aacatttgtt gtaataattg ctaggttgaa gttcaccatg tttaaaaaaa
     2941 atggggggca tggatttaca ttacaaaggc gtccacggtg tattagtgac attcttccat
     3001 tgacatttag agtgaaatat tttatgccaa aaaaaaaatc tcttttttaa aaaagggggt
     3061 ttgactattg ttggcattct tgtggttcct ttaaatgccc ttacctctcc caagaggttg
     3121 ttttgttttg ttttcctccc ttttctcttg aattttagca tccacataaa ttatgcttcc
     3181 aaccttgtat aggtttgtaa gcttgcccag aagtgagacc actgttgaag taccacaaaa
     3241 gtttgaatga acgagtgagt gttcactctt ttgtctgtgg agtctgctgt gtggcaggat
     3301 cccagcccta gagctgcagg gctgccctgt gggacagcgc agcctaagct gatttggatc
     3361 tgggtttctc ctccaggtag ggttgttttg tttccttcgc ccttttcttc tctgtgtaaa
     3421 ggcgattccc tagacccagg atggaccctt cagttataga aatttgttta tggaacccgg
     3481 tggctcccgt catgtttctc cttactcatc caattggtac ccacaactga agagctcgtg
     3541 tatttggcgg gctggaaggg cctggacagt gtcttggttt cactgtttta ttttatttta
     3601 ttttttaact aaagctatat aaagcttgtg gattaaacag aataaatttc taaatttaag
     3661 aac
//
