LOCUS       NM_001359388            1085 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus SRR1 domain containing (Srrd), transcript variant 1,
            mRNA.
ACCESSION   NM_001359388 XM_006535216
VERSION     NM_001359388.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1085)
  AUTHORS   Adachi,Y., Umeda,M., Kawazoe,A., Sato,T., Ohkawa,Y., Kitajima,S.,
            Izawa,S., Sagami,I. and Taketani,S.
  TITLE     The novel heme-dependent inducible protein, SRRD regulates heme
            biosynthesis and circadian rhythms
  JOURNAL   Arch Biochem Biophys 631, 19-29 (2017)
   PUBMED   28802827
  REMARK    GeneRIF: The expression of SRRD was dependent on heme biosynthesis,
            and increased the production of heme. SRRD was expressed under
            circadian rhythms, and influenced the expression of clock genes
            including PER2, BMAL1, and CLOCK.
REFERENCE   2  (bases 1 to 1085)
  AUTHORS   Combes,A.N., Lesieur,E., Harley,V.R., Sinclair,A.H., Little,M.H.,
            Wilhelm,D. and Koopman,P.
  TITLE     Three-dimensional visualization of testis cord morphogenesis, a
            novel tubulogenic mechanism in development
  JOURNAL   Dev Dyn 238 (5), 1033-1041 (2009)
   PUBMED   19334288
REFERENCE   3  (bases 1 to 1085)
  AUTHORS   Staiger,D., Allenbach,L., Salathia,N., Fiechter,V., Davis,S.J.,
            Millar,A.J., Chory,J. and Fankhauser,C.
  TITLE     The Arabidopsis SRR1 gene mediates phyB signaling and is required
            for normal circadian clock function
  JOURNAL   Genes Dev 17 (2), 256-268 (2003)
   PUBMED   12533513
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC123848.4.
            
            On Jan 3, 2018 this sequence version replaced XM_006535216.2.
            
            Transcript Variant: This variant (1) encodes the longer isoform
            (1).
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BI852957.1, SRR11927937.2851263.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164139 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-166               AC123848.4         71731-71896
            167-207             AC123848.4         73635-73675
            208-434             AC123848.4         74648-74874
            435-533             AC123848.4         74954-75052
            534-688             AC123848.4         76299-76453
            689-734             AC123848.4         76724-76769
            735-1085            AC123848.4         77030-77380
FEATURES             Location/Qualifiers
     source          1..1085
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 54.69 cM"
     gene            1..1085
                     /gene="Srrd"
                     /gene_synonym="2810002G02Rik; Srr1"
                     /note="SRR1 domain containing"
                     /db_xref="GeneID:70118"
                     /db_xref="MGI:MGI:1917368"
     exon            1..166
                     /gene="Srrd"
                     /gene_synonym="2810002G02Rik; Srr1"
                     /inference="alignment:Splign:2.1.0"
     CDS             18..1070
                     /gene="Srrd"
                     /gene_synonym="2810002G02Rik; Srr1"
                     /note="isoform 1 is encoded by transcript variant 1;
                     SRR1-like protein; SRR1 domain-containing protein"
                     /codon_start=1
                     /product="SRR1-like protein isoform 1"
                     /protein_id="NP_001346317.1"
                     /db_xref="GeneID:70118"
                     /db_xref="MGI:MGI:1917368"
                     /translation="MAAAALEPWSAVAPRRRKRAAGRRPRPGEGPRAEPEADGEAVLR
                     RLREAEEDLRISDFCSSALETITECLRKQLEQLQPLTEALGRLHLGSSLPSASQEPLA
                     SSASHVKCVCYGLGTFASCPTARIQLAFMLLFLEKCQVPRSHCWVYDPLFSQTEVSVL
                     TSLGVTVLSENEEGKRSVQGQPTVFYMPHCGTALYNNLLWSNWSADALSRVLIIGNSF
                     RGLEERLLARILQENYPYIAKILKGLEEVPLPQTPQYTDTFNDTSVHWFPLLKLEGLP
                     GDLWASQEEPDYQDCEDLEIIRKATDRSAGVTGQFSPPGPGATVHTTPDPLPGQEYRP
                     TGDTESHPALVAWSPK"
     exon            167..207
                     /gene="Srrd"
                     /gene_synonym="2810002G02Rik; Srr1"
                     /inference="alignment:Splign:2.1.0"
     exon            208..434
                     /gene="Srrd"
                     /gene_synonym="2810002G02Rik; Srr1"
                     /inference="alignment:Splign:2.1.0"
     exon            435..533
                     /gene="Srrd"
                     /gene_synonym="2810002G02Rik; Srr1"
                     /inference="alignment:Splign:2.1.0"
     exon            534..688
                     /gene="Srrd"
                     /gene_synonym="2810002G02Rik; Srr1"
                     /inference="alignment:Splign:2.1.0"
     exon            689..734
                     /gene="Srrd"
                     /gene_synonym="2810002G02Rik; Srr1"
                     /inference="alignment:Splign:2.1.0"
     exon            735..1085
                     /gene="Srrd"
                     /gene_synonym="2810002G02Rik; Srr1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1066..1071
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Srrd"
                     /gene_synonym="2810002G02Rik; Srr1"
                     /note="hexamer: AATAGA"
     polyA_site      1085
                     /gene="Srrd"
                     /gene_synonym="2810002G02Rik; Srr1"
                     /note="major polyA site"
ORIGIN      
        1 tctgctgacg tcagagcatg gcggcggcgg ctctcgagcc ctggagcgcg gtggctccgc
       61 ggaggaggaa gcgcgcggcg ggaaggcgac cgcggccggg cgaggggccc cgggccgagc
      121 cggaggcgga cggcgaagcg gtgctacgcc gcctgcggga ggccgaggag gacctgcgga
      181 tctctgattt ctgcagttcg gcactggaaa ccatcaccga gtgtcttagg aaacagttgg
      241 agcaactgca gcccctaaca gaagcccttg gaaggctgca ccttggctca tcgttgccta
      301 gtgcgtcaca ggagcccttg gcttcaagcg cctcccatgt gaagtgtgtg tgctacggtc
      361 ttgggacctt tgcctcctgc cccactgctc ggatccagct tgcttttatg cttctctttc
      421 tagagaagtg ccaggtcccc agaagtcact gctgggtcta tgaccctctg ttcagtcaga
      481 ctgaggtttc cgttctcacc tccctcggcg tgactgtcct cagtgagaat gaggaaggca
      541 agcgcagtgt ccagggccag cccactgtct tctacatgcc acactgtggg acagctctat
      601 acaacaacct gctgtggagc aactggtctg cagacgccct gtccagggtg ctcatcatcg
      661 ggaacagctt ccgaggcctt gaggaaaggt tgttggcgag gattctgcag gaaaattacc
      721 cctacattgc aaagattctg aaaggcctgg aggaggtccc actgccgcag actccccagt
      781 acactgacac ctttaatgat acatctgtcc actggttccc actattgaag ctggaaggac
      841 tgcctgggga cctgtgggca tcccaggaag agcctgacta ccaggactgt gaggacctgg
      901 agatcatcag gaaagctaca gatcgctcag ctggagtaac aggacagttc tctccacctg
      961 ggccaggagc cacggtgcac accacaccag atcctttgcc cggccaggaa tacaggccga
     1021 ctggggacac tgagtcacat cctgccctgg tggcctggtc tcccaaatag agacgttatt
     1081 catca
//
