LOCUS       NM_001100110            4291 bp    mRNA    linear   ROD 06-AUG-2023
DEFINITION  Mus musculus signal recognition particle 54C (Srp54c), transcript
            variant 1, mRNA.
ACCESSION   NM_001100110
VERSION     NM_001100110.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4291)
  AUTHORS   Piao Y, Ko NT, Lim MK and Ko MS.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC174776.3.
            
            On Dec 10, 2019 this sequence version replaced NM_001100110.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK090018.1, SRR1660813.258645.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-268               AC174776.3         158616-158883
            269-378             AC174776.3         167533-167642
            379-470             AC174776.3         168499-168590
            471-555             AC174776.3         169612-169696
            556-660             AC174776.3         174178-174282
            661-727             AC174776.3         175472-175538
            728-785             AC174776.3         175619-175676
            786-936             AC174776.3         178243-178393
            937-1085            AC174776.3         179883-180031
            1086-1186           AC174776.3         180366-180466
            1187-1273           AC174776.3         181011-181097
            1274-1347           AC174776.3         183778-183851
            1348-1456           AC174776.3         184207-184315
            1457-1627           AC174776.3         185664-185834
            1628-1723           AC174776.3         188642-188737
            1724-4291           AC174776.3         190366-192933
FEATURES             Location/Qualifiers
     source          1..4291
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="12"
                     /map="12 23.89 cM"
     gene            1..4291
                     /gene="Srp54c"
                     /gene_synonym="E330029E12Rik"
                     /note="signal recognition particle 54C"
                     /db_xref="GeneID:100101806"
                     /db_xref="MGI:MGI:3714359"
     exon            1..268
                     /gene="Srp54c"
                     /gene_synonym="E330029E12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            269..378
                     /gene="Srp54c"
                     /gene_synonym="E330029E12Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             301..1815
                     /gene="Srp54c"
                     /gene_synonym="E330029E12Rik"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="signal recognition particle 54C isoform 1"
                     /protein_id="NP_001093580.1"
                     /db_xref="CCDS:CCDS49067.1"
                     /db_xref="GeneID:100101806"
                     /db_xref="MGI:MGI:3714359"
                     /translation="MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADV
                     NIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQN
                     VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFY
                     GSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVSNAIQPDNIV
                     YVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTG
                     EHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNKALIEKWKHGQFTLRDMYE
                     QFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDG
                     AKVFSKHPGRIQRVARGSGVSTRDIQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNV
                     SQSQMAKLNQQMAKMMDPRVLHHMGGMAGLQSMMRQFQQGAAGNMKGMMGFNNM"
     exon            379..470
                     /gene="Srp54c"
                     /gene_synonym="E330029E12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            471..555
                     /gene="Srp54c"
                     /gene_synonym="E330029E12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            556..660
                     /gene="Srp54c"
                     /gene_synonym="E330029E12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            661..727
                     /gene="Srp54c"
                     /gene_synonym="E330029E12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            728..785
                     /gene="Srp54c"
                     /gene_synonym="E330029E12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            786..936
                     /gene="Srp54c"
                     /gene_synonym="E330029E12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            937..1085
                     /gene="Srp54c"
                     /gene_synonym="E330029E12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1086..1186
                     /gene="Srp54c"
                     /gene_synonym="E330029E12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1187..1273
                     /gene="Srp54c"
                     /gene_synonym="E330029E12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1274..1347
                     /gene="Srp54c"
                     /gene_synonym="E330029E12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1348..1456
                     /gene="Srp54c"
                     /gene_synonym="E330029E12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1457..1627
                     /gene="Srp54c"
                     /gene_synonym="E330029E12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1628..1723
                     /gene="Srp54c"
                     /gene_synonym="E330029E12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1724..4291
                     /gene="Srp54c"
                     /gene_synonym="E330029E12Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgttttcacg aagggctgaa ctccgccgag tgatgacgtc tcctcattgg gcggaaggtt
       61 cggtggcagt cgtcggtgtt ccagctggtg gtagttggct tcactgtgtt gggcgctggg
      121 cccctagttt ctggagctgg gaagttgggc ggcgggctcc gtccctgtcc ttcagcttcc
      181 agcgttcctg ggtttccttc ggcggcgtgg ggcctcgcca aggactcgcc ggccctgtgg
      241 ggccacggct ttagtggcgc cttttgcgag ttcacataaa tacatcttaa aaccttcaag
      301 atggttctag cagatcttgg aagaaaaata acatcagcat tacgctcatt gagcaatgcc
      361 accattatca atgaagaggt attaaatgct atgctgaaag aagtatgtac agcattattg
      421 gaagcagatg ttaatattaa actagtgaag caactcagag aaaatgttaa gtctgcaatt
      481 gatcttgaag agatggcatc tggactgaac aaaagaaaaa tgattcagca tgctgtattt
      541 aaagaacttg taaagcttgt agaccctgga gttaaagcgt ggacaccgac taagggaaag
      601 caaaatgtga tcatgtttgt tggattgcaa gggagtggta aaacgacaac atgttcaaag
      661 ttagcatatt attaccagag gaaaggttgg aagacctgtt tgatatgtgc agatacattc
      721 agagcaggag cctttgacca gctaaaacag aatgccacca aagcaagaat tccgttctat
      781 ggcagctata ctgaaatgga ccctgtcatc attgcttctg aaggagtgga gaaattcaaa
      841 aatgaaaatt ttgaaattat tattgttgat acaagtggtc gtcacaaaca agaagactct
      901 ttatttgaag aaatgcttca agtttctaat gctatacaac ctgataacat tgtttatgtg
      961 atggatgcat ccatcggaca ggcttgtgag gcccaggcga aggcctttaa agacaaagta
     1021 gatgtagctt cagtaatagt gacaaaactc gacggtcatg cgaaaggagg cggtgctctt
     1081 agtgcagttg ctgccacaaa aagtccaatt attttcattg gtacagggga acatatagat
     1141 gattttgaac ctttcaaaac acaacctttc atcagcaaac tccttggaat gggtgatatt
     1201 gaaggactga ttgataaagt caatgaattg aagttggatg ataacaaggc acttatagag
     1261 aagtggaagc acggtcagtt tacattgcga gacatgtatg aacagtttca gaatattatg
     1321 aaaatgggcc cattcagtca gatattgggg atgattcctg gctttggcac agattttatg
     1381 agcaaaggga atgagcagga gtcaatggca aggctgaaga aactgatgac aatcatggac
     1441 agtatgaacg atcaagaact ggacagtaca gatggtgcca aggttttcag taagcatcca
     1501 gggagaatcc aaagagttgc ccggggatca ggtgtgtcaa caagagatat tcaagaactt
     1561 ctgacccagt ataccaagtt tgcacagatg gtcaaaaaga tgggaggtat caaaggactt
     1621 ttcaaaggcg gtgatatgtc taagaatgtg agtcagtcac agatggcaaa attaaaccaa
     1681 caaatggcca aaatgatgga cccacgagtt cttcatcaca tgggtggcat ggccggcctt
     1741 cagtcaatga tgcggcagtt tcagcagggt gctgctggca acatgaaagg catgatggga
     1801 ttcaataaca tgtaaagacg cccccttact aggaactgac aaggtggatg atgtcatctg
     1861 ctgagacctc acactttctc tccctcttgc aaacggggaa gaaggatatt cttgcctgtc
     1921 ttgccttcgt tcttttgtct caccgttttc cttgtctccc ttcccttctg aagttcggga
     1981 agagtgcctg gtttttgtgg aagtcatcat ttctgcttta aatctattag ttttcaacgt
     2041 cctaacactt cttaagttaa acaaatcatg atgtaaaatt ttggtattta aaggttttta
     2101 attgtctcaa aggccaagca ttacatttat aaacagttgc gatcagtaaa ttacatgata
     2161 ttgaagaaaa gtgctgcaaa ataaacttca agtgataagt taaagggttc gttaactttc
     2221 tttaaggttt gatgtggcag cgtaccaccc agaaaatagg caaaaagcca gcaggtacat
     2281 ttaaaggaat atatattgaa aaatttaatc atgagtatta gaaaatgtta ttttaggatg
     2341 aaataacttt attccaagaa actttagctt taccatttaa aattgaaatc aagaatttgg
     2401 ttacagttcg taatgtatga tgttttgtat caaacttaaa ttttttacat attttggagt
     2461 ctcgtggtcc ttgattgttt ttaaagccat ttttatgttt cttacatact attgaaaaat
     2521 aatatgtttt gataatagat aatacataaa tttgctaatg gaaagtaata ctaaactatt
     2581 aggctacagt attacacatt aaaaataagg ccgtagcagc attggttggt tcattgataa
     2641 ctattgctgt gtgtctgtcc tggaatctca gatgagtaag cttcaattcc agtgacggtt
     2701 ggatgtgtta gcacttgcac catagcacat gtgtgaaggt cagagagcaa ccatgttctt
     2761 tattcttttt ttgtttgttt ctttgagaca tggtctcact atagctctgg ttatccttgg
     2821 aactcactat gtggaccagg ctggcctcaa actcacagag ctccgccttc ctctgcctcc
     2881 tgagtgctga gattaaaagc acaagtgaca tgttgggttt cagaggacaa cttgcagaag
     2941 tcagttctca tttcaccatg tgggtccagg gtttaaactc agctcagtca cacttggcac
     3001 caagtgcctt tatccataga gccatgtcat tggccacagt tccaaagaaa gagaggaagg
     3061 aaggaaaggg agggagggag ggagggaggg agggagggag ggagggaggg atctgtgtgt
     3121 atgagtggtt ttgagtgcat tcttctacat gctcgggtac acattgttga agtcaagaca
     3181 acctcaggtg ctcgtccctg ccttctacgc tgtttaaaca gggtctcttg ttcatgttcc
     3241 agagagctgg gctagctggc cttcaagctc ttaggatcct ggttttcgag ccctaccttg
     3301 ctgtagaagt actgggacta cattgctacc gtgtctacct ttttttggtt tggggagaaa
     3361 ggctcaggct gtcctggaac tcatgacaaa tctcctgctt cagcctccta aattcaggaa
     3421 ttttagtaaa tttaccattc ttagaaaagt attctcataa agaatgcagt tcagctgggc
     3481 atggtagcac ttagcaaatc ccactattta aatagaggct gaggtaggaa gatcatgatt
     3541 tgaaggccag cctaagttat gtagaccatg tctcaaaagc caaaaacgta acaaaaagtg
     3601 catctgattt tgtggtttgc agagggttgg atgttttagc taagaattgt ttagtagagg
     3661 actaggattt ccctagtggg cactgtatgt atttgtggga aattacacat tttatgtttt
     3721 gccagagtgg cctagtaagg tacagttata gaaatccaaa actagagaaa atggtaatta
     3781 aactctgtac actacctttt ctgggtatgt gtcttagtga tttctgtttt ctggatattt
     3841 tgttctgact aaataaaggt aaatgagatg aacctttgga catagcatcc cgaatgcctt
     3901 ctgcatgagt tttgatattt ttatgtctgg ttgaacttta tttttcagaa tctgaatggt
     3961 gacaaaaaag acaattaaag atcatgatgc cttaatttgg agtattacta ggggttctct
     4021 agagtcacag aactatggaa tgactcagta gttgatcagt cctgcgaggc tggatggctc
     4081 atctggtatc tatatatact ggaatcccaa ataagtaggc tttgatgcca gtgaaagaat
     4141 ggacgtgtta gcaaggtgaa ggacaagcag gctaggagca aacgcttcct tctgtgttct
     4201 tgtctagact tccagcagaa gctatggtcc attttaaagg tgtttttctg ccttcaagtt
     4261 tggaataaaa gtatgtgtct tcccacctca a
//
