LOCUS       NM_026075               2377 bp    mRNA    linear   ROD 13-JUN-2024
DEFINITION  Mus musculus splicing regulatory glutamine/lysine-rich protein
            1interacting protein 1 (Srek1ip1), transcript variant 1, mRNA.
ACCESSION   NM_026075
VERSION     NM_026075.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2377)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   2  (bases 1 to 2377)
  AUTHORS   McKee,A.E., Minet,E., Stern,C., Riahi,S., Stiles,C.D. and
            Silver,P.A.
  TITLE     A genome-wide in situ hybridization map of RNA-binding proteins
            reveals anatomically restricted expression in the developing mouse
            brain
  JOURNAL   BMC Dev Biol 5, 14 (2005)
   PUBMED   16033648
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2377)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC137691.7.
            
            On Jul 15, 2022 this sequence version replaced NM_026075.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC096661.1, AK014102.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164132
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-179               AC137691.7         44872-45050         c
            180-227             AC137691.7         35136-35183         c
            228-371             AC137691.7         29241-29384         c
            372-444             AC137691.7         27918-27990         c
            445-2377            AC137691.7         22941-24873         c
FEATURES             Location/Qualifiers
     source          1..2377
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="13"
                     /map="13 56.84 cM"
     gene            1..2377
                     /gene="Srek1ip1"
                     /gene_synonym="3110031B13Rik; Sfrs12ip1; Srsf12ip1"
                     /note="splicing regulatory glutamine/lysine-rich protein
                     1interacting protein 1"
                     /db_xref="GeneID:67288"
                     /db_xref="MGI:MGI:1914538"
     exon            1..179
                     /gene="Srek1ip1"
                     /gene_synonym="3110031B13Rik; Sfrs12ip1; Srsf12ip1"
                     /inference="alignment:Splign:2.1.0"
     CDS             167..628
                     /gene="Srek1ip1"
                     /gene_synonym="3110031B13Rik; Sfrs12ip1; Srsf12ip1"
                     /note="isoform 1 is encoded by transcript variant 1;
                     protein SFRS12IP1; protein SREK1IP1; SREK1-interacting
                     protein 1; SFRS12-interacting protein 1;
                     serine/arginine-rich splicing factor 12, interacting
                     protein 1"
                     /codon_start=1
                     /product="protein SREK1IP1 isoform 1"
                     /protein_id="NP_080351.2"
                     /db_xref="CCDS:CCDS26753.1"
                     /db_xref="GeneID:67288"
                     /db_xref="MGI:MGI:1914538"
                     /translation="MAVPGCNKDNVRAGCRKCGYPGHLTFECRNFLRVDPKRDIVLDV
                     SSTSSEDSDEENEELNKLQALQEKRINEEEEKKKEKSREKIKLKKRRKRSYSSATEED
                     SAKQKKQKYQKKEKKKEKKNKSKKGKHHKKEKKKRKKEKRSSPYHSELTKK"
     exon            180..227
                     /gene="Srek1ip1"
                     /gene_synonym="3110031B13Rik; Sfrs12ip1; Srsf12ip1"
                     /inference="alignment:Splign:2.1.0"
     exon            228..371
                     /gene="Srek1ip1"
                     /gene_synonym="3110031B13Rik; Sfrs12ip1; Srsf12ip1"
                     /inference="alignment:Splign:2.1.0"
     exon            372..444
                     /gene="Srek1ip1"
                     /gene_synonym="3110031B13Rik; Sfrs12ip1; Srsf12ip1"
                     /inference="alignment:Splign:2.1.0"
     exon            445..2377
                     /gene="Srek1ip1"
                     /gene_synonym="3110031B13Rik; Sfrs12ip1; Srsf12ip1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1422..1427
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Srek1ip1"
                     /gene_synonym="3110031B13Rik; Sfrs12ip1; Srsf12ip1"
                     /note="hexamer: ATTAAA"
     polyA_site      1443
                     /gene="Srek1ip1"
                     /gene_synonym="3110031B13Rik; Sfrs12ip1; Srsf12ip1"
                     /note="major polyA site"
     regulatory      1718..1723
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Srek1ip1"
                     /gene_synonym="3110031B13Rik; Sfrs12ip1; Srsf12ip1"
                     /note="hexamer: TATAAA"
     regulatory      1722..1727
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Srek1ip1"
                     /gene_synonym="3110031B13Rik; Sfrs12ip1; Srsf12ip1"
                     /note="hexamer: AATAAG"
     polyA_site      1749
                     /gene="Srek1ip1"
                     /gene_synonym="3110031B13Rik; Sfrs12ip1; Srsf12ip1"
     polyA_site      1756
                     /gene="Srek1ip1"
                     /gene_synonym="3110031B13Rik; Sfrs12ip1; Srsf12ip1"
     regulatory      2358..2363
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Srek1ip1"
                     /gene_synonym="3110031B13Rik; Sfrs12ip1; Srsf12ip1"
                     /note="hexamer: AATAAA"
     polyA_site      2377
                     /gene="Srek1ip1"
                     /gene_synonym="3110031B13Rik; Sfrs12ip1; Srsf12ip1"
ORIGIN      
        1 cttagttccg ccaaccctag atgtgcatcg ggccttcccc tgcccggtga agttgtagtg
       61 gccgggtggg agagatccct ttgggaatgc gctgtcctcg caacggacct gaacctaacg
      121 tgatctcgaa agcccaggac tccgacgatc ccactcacct tgcatcatgg cagtcccagg
      181 ttgcaacaag gacaatgtca gagcaggctg cagaaaatgt ggctaccctg gtcatctgac
      241 tttcgagtgc cgcaattttc tccgggtaga tcccaaaagg gacattgtgt tggacgtcag
      301 cagcaccagt agtgaggaca gtgatgaaga aaatgaggag ctgaacaagc tgcaggctct
      361 gcaggagaaa agaataaatg aagaagagga aaagaaaaag gaaaagagca gggagaaaat
      421 taaattgaag aaaaggagga aaaggtctta ctccagtgcc actgaagagg actccgcaaa
      481 acaaaagaaa cagaagtatc agaaaaaaga aaagaaaaag gaaaaaaaga acaagtcaaa
      541 gaaaggaaag catcacaaaa aggaaaaaaa gaagagaaaa aaggaaaagc gttcttcccc
      601 ttaccattct gaactcacca aaaagtaaca gcgtcttggg cctaactcag aaaattcaag
      661 aattcagtgt ttttaactgt tgagccttcc ttggaagtgc tatgtgatta cactttgcag
      721 gaagtcccag cctcttccat aaagacattc tcacctattg gggcccttct ctctctgacc
      781 atctgtatta aacccatctc tttacttagc agatgtgcct caagtataga catgcgtact
      841 tacaaagcac atcattcttt tggtggctta ggccggtgct gtccctcggt aagtcaatta
      901 gcacgtggct ttactgcagt cacaggaatg atctacttag cagctctgag tcgtgtccgc
      961 cttccagtgg cacagctgcc tcggcaggag tgatttgctc ttgatactga atagctttat
     1021 gtactctgta atgtataaag atagtgaggg tcttcactgt tgttttttaa atctctagac
     1081 tttctaaaat aacattgagg ataaaattgc tttactgatc ttaagtagta agtttttaaa
     1141 tgaatgggat ctacaggaag ataataatga aagtatttat aacagtgccg ttgttttatg
     1201 aaatgcatgt ttctggcact tgcctcccat gtttttataa caattaaaac atcccctttt
     1261 ttaaacaatc atttaggtta ctaggaagtc tggcagagag attctatgct agtcaagatt
     1321 attagggtag atcctgggtt gatttacaaa tgtgccatat tggcatgtct taggtgatac
     1381 ctcaaacaca gagctttttg tgtggtagca gcaaaatcct cattaaaact gattttaatt
     1441 gtatccagtg tatatgatgc ctacatatat tcgtgttatg atagttttta tgaatgtgtg
     1501 catatatata ttttttttct gaaatggttt tagagtgagt ttcacactga acttctggct
     1561 catggataat caatgttgat atttcctctt ccacgtcggt cacagatctt agtagcactg
     1621 tgaaaatttt taaattaaga tttccattct gtacttttta aaattgacga cttggagata
     1681 gcatcgtgaa agcctttgtg taataatgaa atttgtatat aaataagcat tttcaatgac
     1741 atgtcagtag atttaagtgt ctctgaggtt tttaatttca tggttatcag tatagagtag
     1801 tttgacatct aatagtccct aataccacca agttaatgca ttatgccata aaaacattga
     1861 tcaccaacct gctatcatcg aacagccccg aagcctccga gtaccttgct atggttcact
     1921 tcatacatct tcagattggt aagtgcacgt gtggctgcgg gcaaatttat ggccataaaa
     1981 tgagatgcgt acacttggcc ttgcaggctg gagggcttta gcaattgttc ccttacccaa
     2041 actgacattc cctgattgac tgaggggtag tcctaggaag tcccttaatg taccctcatc
     2101 tctgctcagg ttacacagaa gctacgccca cacccttccc tacactgctc ccgtgaagta
     2161 cacctacgta cgtaccttca gctcttccac taactggcta ctctcctggc ccataaaaaa
     2221 agtaattttg tttagagttt tgtcagttgt ttgaactaaa gcacagaact ttaatattta
     2281 gggatttgtt ttgtctatgc taatttttgt gaaagttcag ttatctgaat taataaaagg
     2341 ttatttggat taataaaaat aaaagtcatt tttaaaa
//
