LOCUS       NM_030133               3530 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus S1 RNA binding domain 1 (Srbd1), mRNA.
ACCESSION   NM_030133 NM_207218 XM_986148
VERSION     NM_030133.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3530)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3530)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC154542.2 and AC154185.1.
            
            On or before Apr 9, 2009 this sequence version replaced
            NM_207218.2, NM_030133.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13948564.4319009.1,
                                           SRR13422600.224824.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-55                AC154542.2         143553-143607
            56-135              AC154542.2         146289-146368
            136-316             AC154542.2         149479-149659
            317-688             AC154542.2         152193-152564
            689-855             AC154542.2         158448-158614
            856-973             AC154542.2         160895-161012
            974-1112            AC154542.2         162479-162617
            1113-1209           AC154185.1         3163-3259
            1210-1345           AC154185.1         3860-3995
            1346-1449           AC154185.1         8613-8716
            1450-1557           AC154185.1         14575-14682
            1558-1715           AC154185.1         20909-21066
            1716-1806           AC154185.1         24614-24704
            1807-1914           AC154185.1         25290-25397
            1915-2006           AC154185.1         66142-66233
            2007-2089           AC154185.1         72741-72823
            2090-2196           AC154185.1         119956-120062
            2197-2373           AC154185.1         122302-122478
            2374-2526           AC154185.1         123436-123588
            2527-2711           AC154185.1         135400-135584
            2712-3530           AC154185.1         138426-139244
FEATURES             Location/Qualifiers
     source          1..3530
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 56.51 cM"
     gene            1..3530
                     /gene="Srbd1"
                     /gene_synonym="D530025C17Rik"
                     /note="S1 RNA binding domain 1"
                     /db_xref="GeneID:78586"
                     /db_xref="MGI:MGI:1925836"
     exon            1..55
                     /gene="Srbd1"
                     /gene_synonym="D530025C17Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             56..3001
                     /gene="Srbd1"
                     /gene_synonym="D530025C17Rik"
                     /codon_start=1
                     /product="S1 RNA-binding domain-containing protein 1"
                     /protein_id="NP_084409.3"
                     /db_xref="CCDS:CCDS50204.1"
                     /db_xref="GeneID:78586"
                     /db_xref="MGI:MGI:1925836"
                     /translation="MPSLRKRVKIQAENAEPKDECSFFSELSSGSEEDNKEDSIWEPQ
                     KKVPRNRRQPASKGSKRKQGPRAKKSSQQVDDESKDVAVKEELNSPVAIVDADLEEKS
                     HKLQTTKTLKTAAKKQKKPVPRAKKRLKVDEETSQASPLEGGGSNVETPSTSACGNVC
                     KKEESEDSFTFGQSPVKRIRTESCPQGRPARVPDGVSDIKEEVEMNWDVVQVLSERTN
                     IEPWVCANIIRLFNDDNTIPFIVRYRKELINNLDADFLREVRQTLDELRDVAKKVHSR
                     IQKIKKEGKMSECLLQALLNCKTFEELEHVSAPYKMGSKGTKAQRAKQLGLEGAAWTL
                     LENPGQLNLLSYIKPDVKGLSELNDIETGVQHILADMIAKDKDTLDFIRGLCKHRYIC
                     IQSSLAKVSSKKVNEKEVDKFQLYQNFSCNIRTIHHHQILAINRGENLKILTVKVNIS
                     DGVKNEFCRWCIQNRWRPRGFARPELMKILHNSLDDSFKRLIVPLLCREFRAKLTSDA
                     EKQSVMMFGQNLRQLLLTSPVPGRTLMGVDPGYKHGCKLAIISPTSQILHTDVVYLHC
                     GQGFREAEKIKRLLLHFNCRTVVIGNGTACRETEAYFADLIMKNYFAPLDVVYCIVSE
                     AGASIYSVSPEANKEMPGLDPNLRSAVSIARRVQDPLAELVKFDPKHIGVGMYQHDVS
                     QTLLKATLDSVVEECVSFVGVDINICSEVLLRHIAGLNANRAKNIIEWREKNGPFINR
                     EQLKKVKGLGPKSFQQCAGFVRINQDYIRTFCSQHTDSSGQSQETAMVTNEKLGKKKN
                     KADATLIPNPLDQTCIHPESYDIAVRFLSFIGGTMCEIGKPEMQQKINVSLGKEGIEE
                     TAERLQTTVHTLQVIIDGLSQPKTFDIRTDFDKPDFKRSIVCLEDLQVGTVLTGKVEN
                     ATLFGVFVDIGVGKAGLIPIRFITEAKLSKTKRRRSLGLGPGEKVEVKVLNVDIPRSR
                     ISLDLLRVL"
     exon            56..135
                     /gene="Srbd1"
                     /gene_synonym="D530025C17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            136..316
                     /gene="Srbd1"
                     /gene_synonym="D530025C17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            317..688
                     /gene="Srbd1"
                     /gene_synonym="D530025C17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            689..855
                     /gene="Srbd1"
                     /gene_synonym="D530025C17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            856..973
                     /gene="Srbd1"
                     /gene_synonym="D530025C17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            974..1112
                     /gene="Srbd1"
                     /gene_synonym="D530025C17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1113..1209
                     /gene="Srbd1"
                     /gene_synonym="D530025C17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1210..1345
                     /gene="Srbd1"
                     /gene_synonym="D530025C17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1346..1449
                     /gene="Srbd1"
                     /gene_synonym="D530025C17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1450..1557
                     /gene="Srbd1"
                     /gene_synonym="D530025C17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1558..1715
                     /gene="Srbd1"
                     /gene_synonym="D530025C17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1716..1806
                     /gene="Srbd1"
                     /gene_synonym="D530025C17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1807..1914
                     /gene="Srbd1"
                     /gene_synonym="D530025C17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1915..2006
                     /gene="Srbd1"
                     /gene_synonym="D530025C17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2007..2089
                     /gene="Srbd1"
                     /gene_synonym="D530025C17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2090..2196
                     /gene="Srbd1"
                     /gene_synonym="D530025C17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2197..2373
                     /gene="Srbd1"
                     /gene_synonym="D530025C17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2374..2526
                     /gene="Srbd1"
                     /gene_synonym="D530025C17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2527..2711
                     /gene="Srbd1"
                     /gene_synonym="D530025C17Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2712..3530
                     /gene="Srbd1"
                     /gene_synonym="D530025C17Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3511..3516
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Srbd1"
                     /gene_synonym="D530025C17Rik"
                     /note="hexamer: AATAAA"
     polyA_site      3530
                     /gene="Srbd1"
                     /gene_synonym="D530025C17Rik"
                     /note="major polyA site"
ORIGIN      
        1 ggaaccggaa gattcctcag cagaactctc ttctccagat tcgccaagcc cgaagatgcc
       61 ctcattgcgc aaaagagtga aaatacaggc cgagaatgca gaacccaaag atgaatgctc
      121 tttcttctct gagttgtcat ctggctctga agaagataac aaggaagaca gcatttggga
      181 acctcagaag aaagttccca gaaatcgtag acagcctgct tccaagggat ccaaacggaa
      241 gcaggggccc agggcgaaga agagctccca acaggtggat gacgaatcaa aagatgtggc
      301 tgttaaggag gagttgaaca gcccggtggc tattgttgat gcagatttgg aagagaaaag
      361 ccacaagttg cagacgacaa agactcttaa aactgcagca aaaaagcaaa aaaaaccagt
      421 tccgagggcc aaaaaaaggt tgaaagttga tgaggaaacc agccaggcca gccccttgga
      481 gggtggaggc agtaatgtgg agaccccctc aacaagcgcc tgtggaaatg tgtgcaagaa
      541 ggaggagagc gaggacagct tcacgtttgg gcagtccccg gtaaagagga tcaggactga
      601 gtcatgtcct caggggaggc cggccagggt tcccgacggt gtcagcgaca ttaaagagga
      661 ggtagaaatg aactgggacg tagtacaggt tttatctgag agaactaata ttgaaccttg
      721 ggtttgtgcc aacatcatac gcctctttaa tgatgacaac acaatcccct tcattgtacg
      781 ctatcgaaaa gagctcatta ataaccttga tgctgatttc ttaagagaag ttcgtcaaac
      841 cctagatgag ctacgggatg ttgccaagaa ggttcatagt agaatccaga aaattaagaa
      901 ggaggggaaa atgtcggagt gcttgctgca agccttgttg aactgtaaaa cgttcgagga
      961 actagagcat gtgtctgctc catataaaat ggggagcaag ggcacgaaag cccagagagc
     1021 aaaacagttg gggctagaag gagcagcgtg gaccctgctg gagaacccgg ggcagctcaa
     1081 cctgctgtct tacatcaagc ctgatgttaa aggcctttct gagctcaacg atatcgaaac
     1141 aggagtacaa catattttag cagacatgat tgctaaagac aaagatacgc ttgactttat
     1201 tcggggcttg tgtaaacata gatacatttg tatccagtca tctcttgcaa aagtatcctc
     1261 aaaaaaagta aatgagaagg aagttgataa gtttcagctt taccagaatt tctcctgcaa
     1321 cataaggacc atccaccatc accagattct ggccattaac cgaggagaga atttgaagat
     1381 cctgaccgtc aaagtcaaca tttctgatgg agtaaagaac gaattctgtc gatggtgtat
     1441 acagaacagg tggaggccac gtggctttgc acggccagag ttgatgaaga tcttacataa
     1501 ttcactggat gactccttta agcgcctcat tgttcctctc ctctgtagag agttcagagc
     1561 caaactgaca tcagatgcag agaagcaatc agtaatgatg tttggacaga acctccgcca
     1621 gctcctttta acaagtcctg tgccaggccg caccctgatg ggagtagatc ctggctacaa
     1681 acatggatgc aaactagcca tcatttctcc tactagtcag atccttcaca cggatgtggt
     1741 ttacttgcac tgtggacaag gcttccgaga ggccgagaag atcaagaggc ttttgctgca
     1801 tttcaactgc agaacagtgg tgatcggaaa tggaactgcc tgccgggaaa ctgaagccta
     1861 ctttgctgac ctgataatga aaaattactt tgcaccactg gatgtcgttt actgcatcgt
     1921 cagtgaagca ggggcctcca tctacagtgt cagccccgaa gcgaacaagg agatgccagg
     1981 actggaccct aacttgagaa gtgcagtttc catagcaagg cgtgttcaag atccattagc
     2041 tgagctagtg aaatttgacc cgaagcacat tggagttgga atgtatcagc atgatgtatc
     2101 ccagacatta ctcaaggcaa cactggacag tgttgtagaa gaatgtgtca gctttgtggg
     2161 agtggatatt aacatttgtt ctgaggtttt gttaaggcat attgcaggac tcaatgccaa
     2221 tagagccaaa aatattattg agtggcgaga gaaaaatggc cctttcatta accgagaaca
     2281 gttgaagaag gtgaaagggc ttggtccaaa atccttccag cagtgtgctg gcttcgtcag
     2341 gatcaaccag gattacatcc ggacattctg cagtcaacac actgactctt caggccagag
     2401 ccaggaaact gccatggtca caaatgagaa gctgggcaaa aagaagaaca aagcagatgc
     2461 caccctcata ccaaacccac tggaccagac ttgcatccat ccggaatcct atgacatagc
     2521 agtcaggttt ttatcgttca ttggggggac aatgtgtgag attggaaagc ctgaaatgca
     2581 gcagaaaata aacgtgtctc tcgggaaaga aggcatagag gaaactgctg aaaggttaca
     2641 gacaactgtg cacacactgc aggtcatcat agatggactg agccagccca aaacctttga
     2701 catccgaaca gattttgata agcctgactt caagagaagc atagtgtgtc tggaagacct
     2761 gcaggttggg acagttctta caggcaaagt ggagaatgct actctgtttg gggtctttgt
     2821 ggatatagga gtggggaagg cggggctgat tcctatccgg ttcataacag aagccaagct
     2881 gtccaaaaca aagaggagaa gaagcctggg cctgggcccc ggagagaaag tggaggtgaa
     2941 agtcctcaat gtcgacattc cccgatctcg gatttcgctc gacctcctcc gggtgttgtg
     3001 agtgccccac cgaaggccaa acaccaatgt gttccctcac ttctacagcc tgacaaggac
     3061 gagccagagc tcatggaacc tagagagcgg gggggggggg gctcctgggt agaagtgttc
     3121 atcacactat cctgactccc acggaaagca acaggagacc tcgcatggtg tcctacagca
     3181 gcagtttctg tctttgtaat tccttgttga ccacatacag caggcagctt cacgtcctcc
     3241 cgctaacatc tgctgcctta gacctgggtg ggatgtcttg cttatttgaa atgtgtagtg
     3301 ttgattgaca cattaagact agcagtcttt aatcctgcca ctttattgag gtgttattag
     3361 cacttttgtt cataattcat aattttgtaa taatctttat tttcccttag caaaccaagt
     3421 aaaaataaac tagtaaaaga ttatcatgtt ttatgaccat caacggaatc attttaatgt
     3481 gttcctcaga acgtatgtat tgacttctac aataaatgac tggctggtga
//
