LOCUS       NM_028825                807 bp    mRNA    linear   ROD 29-JUL-2024
DEFINITION  Mus musculus sperm microtubule inner protein 9 (Spmip9), transcript
            variant 1, mRNA.
ACCESSION   NM_028825 XM_132650
VERSION     NM_028825.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 807)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 807)
  AUTHORS   Zhou,L., Liu,H., Liu,S., Yang,X., Dong,Y., Pan,Y., Xiao,Z.,
            Zheng,B., Sun,Y., Huang,P., Zhang,X., Hu,J., Sun,R., Feng,S.,
            Zhu,Y., Liu,M., Gui,M. and Wu,J.
  TITLE     Structures of sperm flagellar doublet microtubules expand the
            genetic spectrum of male infertility
  JOURNAL   Cell 186 (13), 2897-2910 (2023)
   PUBMED   37295417
REFERENCE   3  (bases 1 to 807)
  AUTHORS   Khan,M., Jabeen,N., Khan,T., Hussain,H.M.J., Ali,A., Khan,R.,
            Jiang,L., Li,T., Tao,Q., Zhang,X., Yin,H., Yu,C., Jiang,X. and
            Shi,Q.
  TITLE     The evolutionarily conserved genes: Tex37, Ccdc73, Prss55 and Nxt2
            are dispensable for fertility in mice
  JOURNAL   Sci Rep 8 (1), 4975 (2018)
   PUBMED   29563520
  REMARK    GeneRIF: Study of the mouse Tex37 and Prss55 - genes evolutionarily
            conserved in eutherians (including human) found that these genes
            had a testis-enriched expression pattern in mice, but they are not
            individually essential for spermatogenesis, testis development and
            male fertility in mice in laboratory conditions.
            Publication Status: Online-Only
REFERENCE   4  (bases 1 to 807)
  AUTHORS   Dickinson,M.E., Flenniken,A.M., Ji,X., Teboul,L., Wong,M.D.,
            White,J.K., Meehan,T.F., Weninger,W.J., Westerberg,H., Adissu,H.,
            Baker,C.N., Bower,L., Brown,J.M., Caddle,L.B., Chiani,F., Clary,D.,
            Cleak,J., Daly,M.J., Denegre,J.M., Doe,B., Dolan,M.E., Edie,S.M.,
            Fuchs,H., Gailus-Durner,V., Galli,A., Gambadoro,A., Gallegos,J.,
            Guo,S., Horner,N.R., Hsu,C.W., Johnson,S.J., Kalaga,S., Keith,L.C.,
            Lanoue,L., Lawson,T.N., Lek,M., Mark,M., Marschall,S., Mason,J.,
            McElwee,M.L., Newbigging,S., Nutter,L.M., Peterson,K.A.,
            Ramirez-Solis,R., Rowland,D.J., Ryder,E., Samocha,K.E.,
            Seavitt,J.R., Selloum,M., Szoke-Kovacs,Z., Tamura,M., Trainor,A.G.,
            Tudose,I., Wakana,S., Warren,J., Wendling,O., West,D.B., Wong,L.,
            Yoshiki,A., MacArthur,D.G., Tocchini-Valentini,G.P., Gao,X.,
            Flicek,P., Bradley,A., Skarnes,W.C., Justice,M.J., Parkinson,H.E.,
            Moore,M., Wells,S., Braun,R.E., Svenson,K.L., de Angelis,M.H.,
            Herault,Y., Mohun,T., Mallon,A.M., Henkelman,R.M., Brown,S.D.,
            Adams,D.J., Lloyd,K.C., McKerlie,C., Beaudet,A.L., Bucan,M. and
            Murray,S.A.
  CONSRTM   International Mouse Phenotyping Consortium; Jackson Laboratory;
            Infrastructure Nationale PHENOMIN, Institut Clinique de la Souris
            (ICS); Charles River Laboratories; MRC Harwell; Toronto Centre for
            Phenogenomics; Wellcome Trust Sanger Institute; RIKEN BioResource
            Center
  TITLE     High-throughput discovery of novel developmental phenotypes
  JOURNAL   Nature 537 (7621), 508-514 (2016)
   PUBMED   27626380
  REMARK    Erratum:[Nature. 2017 Nov 16;551(7680):398. doi:
            10.1038/nature24643. PMID: 29144450]
REFERENCE   5  (bases 1 to 807)
  AUTHORS   West,D.B., Engelhard,E.K., Adkisson,M., Nava,A.J., Kirov,J.V.,
            Cipollone,A., Willis,B., Rapp,J., de Jong,P.J. and Lloyd,K.C.
  TITLE     Transcriptome Analysis of Targeted Mouse Mutations Reveals the
            Topography of Local Changes in Gene Expression
  JOURNAL   PLoS Genet 12 (2), e1005691 (2016)
   PUBMED   26839965
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 807)
  AUTHORS   Yu,Z., Tang,A., Gui,Y., Guo,X., Zhu,H., Long,Y., Li,Z. and Cai,Z.
  TITLE     Identification and characteristics of a novel testis-specific gene,
            Tsc21, in mice and human
  JOURNAL   Mol Biol Rep 34 (2), 127-134 (2007)
   PUBMED   17091336
  REMARK    GeneRIF: Identification of a novel gene, Tsc21, exclusively
            expressed in testes.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK005862.1.
            
            On Oct 4, 2009 this sequence version replaced NM_028825.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK005862.1, BU938995.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-807               AK005862.1         2-808
FEATURES             Location/Qualifiers
     source          1..807
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 32.12 cM"
     gene            1..807
                     /gene="Spmip9"
                     /gene_synonym="1700011F03Rik; Tex37; Tsc21"
                     /note="sperm microtubule inner protein 9"
                     /db_xref="GeneID:74221"
                     /db_xref="MGI:MGI:1921471"
     exon            1..79
                     /gene="Spmip9"
                     /gene_synonym="1700011F03Rik; Tex37; Tsc21"
                     /inference="alignment:Splign:2.1.0"
     exon            80..116
                     /gene="Spmip9"
                     /gene_synonym="1700011F03Rik; Tex37; Tsc21"
                     /inference="alignment:Splign:2.1.0"
     exon            117..209
                     /gene="Spmip9"
                     /gene_synonym="1700011F03Rik; Tex37; Tsc21"
                     /inference="alignment:Splign:2.1.0"
     exon            210..807
                     /gene="Spmip9"
                     /gene_synonym="1700011F03Rik; Tex37; Tsc21"
                     /inference="alignment:Splign:2.1.0"
     regulatory      705..710
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Spmip9"
                     /gene_synonym="1700011F03Rik; Tex37; Tsc21"
                     /note="hexamer: AATAAA"
     polyA_site      729
                     /gene="Spmip9"
                     /gene_synonym="1700011F03Rik; Tex37; Tsc21"
                     /note="major polyA site"
ORIGIN      
        1 agtgccaaca ggactctcca tacagctggg gcacctgggg ttgaaagggc aagaacatcg
       61 tgtcttgcca aaggaaaagg tccttggcca tggcacgtgt ggtgagaccc caaaagaacc
      121 acgtggacct agatatatac caaagctcat acatggtgga ctataagccc tttgggaagt
      181 acaaatattc tagagtcacg ccacaagagc aggccaagct tgacgctcag ctccagagca
      241 aagagtttta ccagcccaag cccaacccca accccaagct ggaggaaggc tatcctgctt
      301 tcagaagacc ctacatgact gccctagact tgggagtccc tggcttcttc ccgccacaag
      361 aacgggtaac tactaggaag gatgacggca ggtttaccac cacctgccat tatgcttacc
      421 cagcatccct ggcgctgtac ctggcccagc aagaccccta ctggcttcac cagagggccg
      481 acttcccatg cctcatggaa ccggagcggc agcctgctcc agaagtgggc aaaggctacc
      541 ttctactccc tggctgtctc tgtgaccatc accagagagt caaggtcccc atcttgaata
      601 ggtggggccc cttgatgcca ttttaccagt agacgtgtga gaatacccgc tgtttcaacg
      661 tatgaaggaa ttccatgcca atgctcacag agaaagcacc aaaaaataaa ctgggaaaga
      721 tgttccttat gcgaaggggt attgtttcat agtcccggcc tcatctcgga gggaaggaag
      781 gaggaaaaat tggtgcatgt gctgaac
//
