LOCUS       NM_001347068            2118 bp    mRNA    linear   ROD 12-JUN-2024
DEFINITION  Mus musculus sperm microtubule inner protein 7 (Spmip7), transcript
            variant 1, mRNA.
ACCESSION   NM_001347068
VERSION     NM_001347068.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2118)
  AUTHORS   Zhang,J., Yan,R., Wu,C., Wang,H., Yang,G., Zhong,Y., Liu,Y., Wan,L.
            and Tang,A.
  TITLE     Spermatogenesis-associated 48 is essential for spermatogenesis in
            mice
  JOURNAL   Andrologia 50 (6), e13027 (2018)
   PUBMED   29700843
  REMARK    GeneRIF: In humans and mice with azoospermia, expression of SPATA48
            disappeared in the testis.
REFERENCE   2  (bases 1 to 2118)
  AUTHORS   Brody,M.J., Hacker,T.A., Patel,J.R., Feng,L., Sadoshima,J.,
            Tevosian,S.G., Balijepalli,R.C., Moss,R.L. and Lee,Y.
  TITLE     Ablation of the cardiac-specific gene leucine-rich repeat
            containing 10 (Lrrc10) results in dilated cardiomyopathy
  JOURNAL   PLoS One 7 (12), e51621 (2012)
   PUBMED   23236519
REFERENCE   3  (bases 1 to 2118)
  AUTHORS   L'Hote,D., Vatin,M., Auer,J., Castille,J., Passet,B.,
            Montagutelli,X., Serres,C. and Vaiman,D.
  TITLE     Fidgetin-like1 is a strong candidate for a dynamic impairment of
            male meiosis leading to reduced testis weight in mice
  JOURNAL   PLoS One 6 (11), e27582 (2011)
   PUBMED   22110678
REFERENCE   4  (bases 1 to 2118)
  AUTHORS   Pourtier,L. and Sicard,G.
  TITLE     Comparison of the sensitivity of C57BL/6J and AKR/J mice to
            airborne molecules of isovaleric acid and amyl acetate
  JOURNAL   Behav Genet 20 (4), 499-509 (1990)
   PUBMED   2175173
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL662805.13.
            
            On Feb 15, 2022 this sequence version replaced NM_001347068.1.
            
            Transcript Variant: This variant (1) represents the longest
            transcript and encodes the longest isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189685.135079.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384, SAMN01164143
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-793               AL662805.13        105666-106458
            794-894             AL662805.13        118726-118826
            895-971             AL662805.13        129303-129379
            972-1110            AL662805.13        130140-130278
            1111-1178           AL662805.13        131853-131920
            1179-1220           AL662805.13        137047-137088
            1221-1328           AL662805.13        138033-138140
            1329-1436           AL662805.13        150862-150969
            1437-2118           AL662805.13        156609-157290
FEATURES             Location/Qualifiers
     source          1..2118
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 6.93 cM"
     gene            1..2118
                     /gene="Spmip7"
                     /gene_synonym="4930415F15Rik; Spata48"
                     /note="sperm microtubule inner protein 7"
                     /db_xref="GeneID:73862"
                     /db_xref="MGI:MGI:1921112"
     exon            1..793
                     /gene="Spmip7"
                     /gene_synonym="4930415F15Rik; Spata48"
                     /inference="alignment:Splign:2.1.0"
     CDS             223..1560
                     /gene="Spmip7"
                     /gene_synonym="4930415F15Rik; Spata48"
                     /note="isoform 1 is encoded by transcript variant 1;
                     uncharacterized protein C7orf72 homolog; post-meiotic
                     spermatogenesis protein 1; spermatogenesis-associated
                     protein 48; post meiotic spermatogenesis 1;
                     spermatogenesis associated 48; protein SPMIP7"
                     /codon_start=1
                     /product="protein SPMIP7 isoform 1"
                     /protein_id="NP_001333997.1"
                     /db_xref="CCDS:CCDS88132.1"
                     /db_xref="GeneID:73862"
                     /db_xref="MGI:MGI:1921112"
                     /translation="MRQYMDMEVKTMPGKISIPRRFIFSEGKAIEHPDYPHYSNLLQK
                     MNMPSVKGLEDRHNCVRFEKKCNPTFLKFHPYPPSVLPDYHLHYPYPPPYGRAYPLAP
                     LRDDVPLGDPCSGFMSPGGDANLKPNIGRAIPNLVSFHDVKPQNRVPRPDKGFQTTIK
                     RQTILAEELKQDRRWNSRKVPDISIKAKLGGWTSPMKVVPVPVHEHEVGTLSRIYTFD
                     EEAISTDDSEPLVQLDKKYNIKDSFYKSSTQKAYEDVPWDKMLPPKLDPEETTVEKAA
                     DHISQCFSLKRYERLPAITQMVGGLWDRFQTRLFSAPAKPINFVSPSTRSKYIPLYTG
                     HVQSTDADNVDNPYGDIKSVASPRHSKLQYTNSSRSANIPGYTGKVHFTATHPTNSNI
                     PSREPSADSEMNRLLLQEMRVDRFRHQGPMSQMVTTVKPYNPFNKKEKETLEY"
     exon            794..894
                     /gene="Spmip7"
                     /gene_synonym="4930415F15Rik; Spata48"
                     /inference="alignment:Splign:2.1.0"
     exon            895..971
                     /gene="Spmip7"
                     /gene_synonym="4930415F15Rik; Spata48"
                     /inference="alignment:Splign:2.1.0"
     exon            972..1110
                     /gene="Spmip7"
                     /gene_synonym="4930415F15Rik; Spata48"
                     /inference="alignment:Splign:2.1.0"
     exon            1111..1178
                     /gene="Spmip7"
                     /gene_synonym="4930415F15Rik; Spata48"
                     /inference="alignment:Splign:2.1.0"
     exon            1179..1220
                     /gene="Spmip7"
                     /gene_synonym="4930415F15Rik; Spata48"
                     /inference="alignment:Splign:2.1.0"
     exon            1221..1328
                     /gene="Spmip7"
                     /gene_synonym="4930415F15Rik; Spata48"
                     /inference="alignment:Splign:2.1.0"
     exon            1329..1436
                     /gene="Spmip7"
                     /gene_synonym="4930415F15Rik; Spata48"
                     /inference="alignment:Splign:2.1.0"
     exon            1437..2118
                     /gene="Spmip7"
                     /gene_synonym="4930415F15Rik; Spata48"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1624..1629
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Spmip7"
                     /gene_synonym="4930415F15Rik; Spata48"
                     /note="hexamer: AAGAAA"
     polyA_site      1652
                     /gene="Spmip7"
                     /gene_synonym="4930415F15Rik; Spata48"
     regulatory      2098..2103
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Spmip7"
                     /gene_synonym="4930415F15Rik; Spata48"
                     /note="hexamer: AATAAA"
     polyA_site      2118
                     /gene="Spmip7"
                     /gene_synonym="4930415F15Rik; Spata48"
                     /note="major polyA site"
ORIGIN      
        1 attattatta tgtcctattt ctatactggc ctatctccct ttcagcagaa aaaaattacc
       61 ttaagacttt ttaaatgact aacatttaga aaattgaatt aattttatgg tggattaatc
      121 ctaatcttcc attactggaa atatgggttt ttaatagtta aatggtaaaa aaaaaaaaaa
      181 aaaaaaaaaa caaaggaatt taattcataa tcctcaaaac tgatgagaca gtacatggat
      241 atggaggtca agaccatgcc tgggaagatc agtatcccta gaaggttcat cttctcagaa
      301 ggaaaggcta ttgagcatcc agattacccg cactacagta acctcttaca gaaaatgaac
      361 atgccctctg tgaaaggact tgaagacaga cataactgtg tcagatttga aaagaaatgc
      421 aaccctacat ttttaaaatt tcatccttat ccaccttcag tcttgccgga ctatcatctt
      481 cactacccct atcccccacc atatgggagg gcatatccat tagcaccatt gcgtgacgat
      541 gtgcccttgg gtgacccctg ctcaggattt atgagtcctg gtggagatgc taatttaaag
      601 cctaatatag gcagagccat accaaacctg gtgagtttcc atgatgtgaa acctcaaaat
      661 cgagttccta gaccagacaa aggatttcaa acaacaataa aaaggcaaac aatacttgca
      721 gaagaactaa aacaggatag gagatggaat tccaggaaag tgccagacat ttccatcaag
      781 gcaaagcttg gaggttggac aagcccaatg aaggttgttc ctgtaccagt ccatgaacat
      841 gaagtaggca cactaagtcg catatatacc tttgacgagg aggcaataag tacagatgat
      901 agtgaaccac ttgtccagct agacaagaaa tataacataa aggattcatt ttacaaatcc
      961 tcgacacaga aagcttatga agatgttcct tgggacaaga tgctaccacc aaaacttgac
     1021 ccagaagaaa caaccgtgga aaaagctgcc gaccacatct cacagtgttt ttcactgaaa
     1081 agatatgaaa gactaccagc cataacccag atggtcggag gactttggga cagatttcag
     1141 acaagattgt tctcagcgcc agccaaacca atcaattttg tgagtccaag tactaggagt
     1201 aaatacattc ctctgtatac tggtcatgtg cagagcacag acgctgacaa tgtggacaat
     1261 ccctacggag atatcaagtc tgtggccagt cctaggcact ctaaacttca gtatacaaac
     1321 tcaagccggt ctgcgaatat cccaggatac actggcaagg ttcatttcac agccacccac
     1381 ccaacaaatt ctaatattcc atcaagagag ccatcagcag attcggagat gaaccgcctc
     1441 ttactacaag aaatgagagt cgaccgcttc cgtcaccagg gcccaatgtc ccaaatggtg
     1501 acaactgtga agccctacaa cccttttaac aagaaggaaa aagaaaccct tgagtactga
     1561 aggagaccac acccctgaga aacttctcag ttcagccagg ggatggcttt gtacacagtg
     1621 atgaagaaaa aaaaaagaag aagaacacag aatgttctaa gtgtgtctgt ctttctgaat
     1681 ttagggtaga tagaaaaaca gcacatcgag gcctgagctc agactcaggg acactatcta
     1741 aagatagata gaaaaaaatc attctctctc ctcttccaga atctctgttg tagagaatga
     1801 agcattcctg tgttccctga gggtccttgg gcaggcaggg ccaaccatat acatcatcag
     1861 attagtgtgg tctgactatg cctaactaat gagaacataa gcagcagaag cgccccaggg
     1921 tctccccagt acagttctat tcataggttc aggaaacatg tacatgttag tttgtgaaca
     1981 tctgaatgag cctattcgag ttacagtgta cttttataat cttatttaat ttgcatttga
     2041 tgttgcaacc ctataataca ctcatagaac actgtacaca taacttgctg ttttataaat
     2101 aaaacacata aaagctaa
//
