LOCUS       NM_027970               1723 bp    mRNA    linear   ROD 14-JUN-2024
DEFINITION  Mus musculus sperm microtubule associated protein 2 like (Spmap2l),
            transcript variant 1, mRNA.
ACCESSION   NM_027970 XM_485635
VERSION     NM_027970.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1723)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1723)
  AUTHORS   Dickinson,M.E., Flenniken,A.M., Ji,X., Teboul,L., Wong,M.D.,
            White,J.K., Meehan,T.F., Weninger,W.J., Westerberg,H., Adissu,H.,
            Baker,C.N., Bower,L., Brown,J.M., Caddle,L.B., Chiani,F., Clary,D.,
            Cleak,J., Daly,M.J., Denegre,J.M., Doe,B., Dolan,M.E., Edie,S.M.,
            Fuchs,H., Gailus-Durner,V., Galli,A., Gambadoro,A., Gallegos,J.,
            Guo,S., Horner,N.R., Hsu,C.W., Johnson,S.J., Kalaga,S., Keith,L.C.,
            Lanoue,L., Lawson,T.N., Lek,M., Mark,M., Marschall,S., Mason,J.,
            McElwee,M.L., Newbigging,S., Nutter,L.M., Peterson,K.A.,
            Ramirez-Solis,R., Rowland,D.J., Ryder,E., Samocha,K.E.,
            Seavitt,J.R., Selloum,M., Szoke-Kovacs,Z., Tamura,M., Trainor,A.G.,
            Tudose,I., Wakana,S., Warren,J., Wendling,O., West,D.B., Wong,L.,
            Yoshiki,A., MacArthur,D.G., Tocchini-Valentini,G.P., Gao,X.,
            Flicek,P., Bradley,A., Skarnes,W.C., Justice,M.J., Parkinson,H.E.,
            Moore,M., Wells,S., Braun,R.E., Svenson,K.L., de Angelis,M.H.,
            Herault,Y., Mohun,T., Mallon,A.M., Henkelman,R.M., Brown,S.D.,
            Adams,D.J., Lloyd,K.C., McKerlie,C., Beaudet,A.L., Bucan,M. and
            Murray,S.A.
  CONSRTM   International Mouse Phenotyping Consortium; Jackson Laboratory;
            Infrastructure Nationale PHENOMIN, Institut Clinique de la Souris
            (ICS); Charles River Laboratories; MRC Harwell; Toronto Centre for
            Phenogenomics; Wellcome Trust Sanger Institute; RIKEN BioResource
            Center
  TITLE     High-throughput discovery of novel developmental phenotypes
  JOURNAL   Nature 537 (7621), 508-514 (2016)
   PUBMED   27626380
  REMARK    Erratum:[Nature. 2017 Nov 16;551(7680):398. doi:
            10.1038/nature24643. PMID: 29144450]
REFERENCE   3  (bases 1 to 1723)
  AUTHORS   Miyata,H., Castaneda,J.M., Fujihara,Y., Yu,Z., Archambeault,D.R.,
            Isotani,A., Kiyozumi,D., Kriseman,M.L., Mashiko,D., Matsumura,T.,
            Matzuk,R.M., Mori,M., Noda,T., Oji,A., Okabe,M.,
            Prunskaite-Hyyrylainen,R., Ramirez-Solis,R., Satouh,Y., Zhang,Q.,
            Ikawa,M. and Matzuk,M.M.
  TITLE     Genome engineering uncovers 54 evolutionarily conserved and
            testis-enriched genes that are not required for male fertility in
            mice
  JOURNAL   Proc Natl Acad Sci U S A 113 (28), 7704-7710 (2016)
   PUBMED   27357688
REFERENCE   4  (bases 1 to 1723)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC114666.31 and AC165975.4.
            
            On Mar 9, 2023 this sequence version replaced NM_027970.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC053422.1, SRR5189685.113805.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384, SAMN01164134
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-607               AC114666.31        16915-17521         c
            608-641             AC165975.4         174761-174794       c
            642-707             AC165975.4         172809-172874       c
            708-836             AC165975.4         169614-169742       c
            837-974             AC165975.4         162303-162440       c
            975-1077            AC165975.4         160807-160909       c
            1078-1209           AC165975.4         157405-157536       c
            1210-1385           AC165975.4         155999-156174       c
            1386-1723           AC165975.4         155355-155692       c
FEATURES             Location/Qualifiers
     source          1..1723
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 41.45 cM"
     gene            1..1723
                     /gene="Spmap2l"
                     /gene_synonym="1700023E05Rik; Thegl"
                     /note="sperm microtubule associated protein 2 like"
                     /db_xref="GeneID:71868"
                     /db_xref="MGI:MGI:1919118"
     exon            1..607
                     /gene="Spmap2l"
                     /gene_synonym="1700023E05Rik; Thegl"
                     /inference="alignment:Splign:2.1.0"
     exon            608..641
                     /gene="Spmap2l"
                     /gene_synonym="1700023E05Rik; Thegl"
                     /inference="alignment:Splign:2.1.0"
     exon            642..707
                     /gene="Spmap2l"
                     /gene_synonym="1700023E05Rik; Thegl"
                     /inference="alignment:Splign:2.1.0"
     exon            708..836
                     /gene="Spmap2l"
                     /gene_synonym="1700023E05Rik; Thegl"
                     /inference="alignment:Splign:2.1.0"
     exon            837..974
                     /gene="Spmap2l"
                     /gene_synonym="1700023E05Rik; Thegl"
                     /inference="alignment:Splign:2.1.0"
     exon            975..1077
                     /gene="Spmap2l"
                     /gene_synonym="1700023E05Rik; Thegl"
                     /inference="alignment:Splign:2.1.0"
     exon            1078..1209
                     /gene="Spmap2l"
                     /gene_synonym="1700023E05Rik; Thegl"
                     /inference="alignment:Splign:2.1.0"
     exon            1210..1385
                     /gene="Spmap2l"
                     /gene_synonym="1700023E05Rik; Thegl"
                     /inference="alignment:Splign:2.1.0"
     exon            1386..1723
                     /gene="Spmap2l"
                     /gene_synonym="1700023E05Rik; Thegl"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1693..1698
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Spmap2l"
                     /gene_synonym="1700023E05Rik; Thegl"
                     /note="hexamer: AATAAA"
     polyA_site      1723
                     /gene="Spmap2l"
                     /gene_synonym="1700023E05Rik; Thegl"
                     /note="major polyA site"
ORIGIN      
        1 ggagctgagg ctgtcccggg cagggcgccg gcggccccga atcacctgtc cactccgcga
       61 actgagtttg ggcggctggc ggagagtttg agagccgggt agccggagct tctaaccgga
      121 atggaggaag gagacttctc aggttcatcc gtgcgatccg aggtgacgga tgggcggaac
      181 accacgacca cgacagaaac acgcacaacc tctgaactcc aaccgaagcc ccttgtgctc
      241 aggctcctgg aggtgcagaa tggtgacgag gccgaagcgg ttggggagga aggacaagaa
      301 gaggactacg aagggtccaa gactcacaaa tcccatgagg tctccgcatc cttcagatcc
      361 cacaactcca gcgatcctcc ccagtcccgc aaggccagtg attccctccg gtctcgcaag
      421 ggcattgagc ccctggagcc ccgcaagacc agtgattcct tccggtccct aatgggcagt
      481 gatccccttc agtcatccga gcgccaggag gatggaaaag atgatttgtt tcccaacgca
      541 gtgattatga cctccccatc tttgatagcc agatacctac cacggctcca gctggcttct
      601 ctgagagcac acccagttac ccgtgacctt gtaaagaaat gtttttattc taggaaaaga
      661 gttcaagatc tttctaaacc gaaaaagcaa tggggaactc cggacaggag gctgttttgg
      721 ggaaatcaag atcccattcg ccctgtttct gaggctgctt tgaaagctaa gctatccaag
      781 agaattgagg accttgctca gcccaggctg gtctcccgac attatgtccc taacagaatt
      841 caatattact acagctgcgg aagagagtct gttatctggg agatctctcc tcctgcgctg
      901 gttacccggc cttccaaacg gatccagaag ctggccaaac ccaacaaatt caaagcacag
      961 agtctgataa agagagaaac cgtaccaggc accactcgtt actctgatcc ttctccccgg
     1021 attctgcgac tctccatcgc caaaggcacc aatcccagct accttcctcc aaagaccttg
     1081 gaaaccaaga tttccttctc taccctgagt gctgttgcaa ctccaaggat tgtagacctt
     1141 gcccacccaa ggattaagat agagggccta tgctatgaaa gagaaaggag tgaattgccc
     1201 atccgtcccg tagcccctgc tgccctactt gctaatccta gtaaaagaac gatatttcta
     1261 gcaaagtcca agcgtgttca tgaagactat ctccctatcc gagatgctcg gtggcctgta
     1321 tcttacgctg cgactcattc tcaggtgtct gagagagtcc aggagttagc taatccacac
     1381 acaaggggtc cagcgaacct tgtatactac gacccaaacg tctttaaagt caagccttct
     1441 gctttaaaag cacactgttc cgacagggtc aaggagctgg cggaacccat tgtgcgttaa
     1501 ctacggcaag ccaccccagg tagacacaag ttaggtatct agaccgtgcg gcagataact
     1561 ttgttcccag ccttggtatt tacatcttac tgatcacctc ccagacatga gacttccaga
     1621 aaacaccgct gtgagcgtca gatggcaccg tgtgtgatct tgtctttacc aagtttgggg
     1681 accttaccca gcaataaaaa agaaagcagt gcctgcctca tta
//
