LOCUS       NM_001033465            1176 bp    mRNA    linear   ROD 05-AUG-2023
DEFINITION  Mus musculus sperm flagellar 1 like (Spef1l), transcript variant 1,
            mRNA.
ACCESSION   NM_001033465
VERSION     NM_001033465.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1176)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK131789.1 and BF152936.1.
            
            On Jan 18, 2018 this sequence version replaced NM_001033465.2.
            
            Transcript Variant: This variant (1) represents the longest
            transcript and encodes the longest isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK131789.1, BC145730.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1161              AK131789.1         2-1162
            1162-1176           BF152936.1         1-15                c
FEATURES             Location/Qualifiers
     source          1..1176
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 84.95 cM"
     gene            1..1176
                     /gene="Spef1l"
                     /gene_synonym="6430531B16Rik; Gm1093"
                     /note="sperm flagellar 1 like"
                     /db_xref="GeneID:381933"
                     /db_xref="MGI:MGI:2685939"
     exon            1..209
                     /gene="Spef1l"
                     /gene_synonym="6430531B16Rik; Gm1093"
                     /inference="alignment:Splign:2.1.0"
     CDS             74..997
                     /gene="Spef1l"
                     /gene_synonym="6430531B16Rik; Gm1093"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="uncharacterized protein LOC381933 isoform 1"
                     /protein_id="NP_001028637.1"
                     /db_xref="CCDS:CCDS40172.1"
                     /db_xref="GeneID:381933"
                     /db_xref="MGI:MGI:2685939"
                     /translation="MLSASKPSSASFLPTPGDIHNLCAWLDRLPLSRPKRHLARDFSD
                     GVLVAEIVKHFRPRLVDLHSYVPACSTDQKLSNWSLLNRKVFRKLHLCISDNDIQRVV
                     SNRPGVIESILCALREKMEARTVHVGSAGTADPRHSAVDAVRPWRDLTPNPHTSKMQD
                     PDVDNSSLSEPLWDSGGEHHSVPESWVHDVELPNLQKKAGLQSPPAPSSTKILQNQRD
                     LEKMGCCACRGDSIEGLWDHLVSIQQQLEDKEQALAILQETVKILQLKVMRLEHLVQL
                     KDQRIWELMRTGPEEHQSWRRPHPESLRPRS"
     exon            210..321
                     /gene="Spef1l"
                     /gene_synonym="6430531B16Rik; Gm1093"
                     /inference="alignment:Splign:2.1.0"
     exon            322..472
                     /gene="Spef1l"
                     /gene_synonym="6430531B16Rik; Gm1093"
                     /inference="alignment:Splign:2.1.0"
     exon            473..671
                     /gene="Spef1l"
                     /gene_synonym="6430531B16Rik; Gm1093"
                     /inference="alignment:Splign:2.1.0"
     exon            672..759
                     /gene="Spef1l"
                     /gene_synonym="6430531B16Rik; Gm1093"
                     /inference="alignment:Splign:2.1.0"
     exon            760..856
                     /gene="Spef1l"
                     /gene_synonym="6430531B16Rik; Gm1093"
                     /inference="alignment:Splign:2.1.0"
     exon            857..1166
                     /gene="Spef1l"
                     /gene_synonym="6430531B16Rik; Gm1093"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtctcccagc aacggtccaa acccgccagg tttcttccgc tgtgtttctc tgctgcacac
       61 ccacttctct gccatgctca gtgcttccaa gccgagctca gcttcgttcc tgccaacgcc
      121 tggggatatt cataacctct gcgcctggct ggaccggctc ccactcagcc gccccaagcg
      181 ccacttggct cgggacttca gtgatggtgt gctggtggcc gagattgtga agcacttccg
      241 ccctcggctg gtggacttgc acagctacgt cccagcctgc agtacagacc agaagctgag
      301 caactggagc cttctcaaca ggaaagtctt tcgcaagctg cacttgtgta tctcagataa
      361 tgatatccaa agggtggtat ccaacaggcc tggagttatc gagtctattc tatgtgcact
      421 gagggagaag atggaggcca ggactgttca tgtaggctca gctggtacag ctgatccaag
      481 acactctgct gtggatgctg tccgaccctg gcgggatctt acccccaacc cacatacctc
      541 taagatgcaa gatcctgatg tggataacag cagcttgtca gaacccctct gggactccgg
      601 tggagagcac cactctgttc ccgaaagctg ggtccatgat gttgaactcc caaaccttca
      661 aaagaaggca ggcctacaga gccctccagc cccctccagc acgaagatcc ttcagaatca
      721 aagggatttg gagaaaatgg gctgctgtgc ttgcagaggg gactcaattg aagggctctg
      781 ggatcacctg gtcagcatcc agcagcagct ggaggataag gagcaagcac tagccattct
      841 gcaggagacg gtcaagattt tgcagttgaa ggtgatgagg ttggaacacc tggtacagct
      901 gaaggaccag cggatctggg agctgatgag aactggaccc gaggagcatc agagctggag
      961 gaggccccac ccagagtcac tcagacctcg atcctgagcc caaccggagc tcctcactgg
     1021 tcatgcagcc tccatgtgag acgtgaggtg tggaggccag agcacgctgg ggccgcagac
     1081 gagtttggac agatttgagt ttggttctcc caacccccca atatcgtgtc atcatcattg
     1141 atttactgca tttgtgagct cacaaaaaaa aaaaaa
//
