LOCUS       NM_001281514             795 bp    mRNA    linear   ROD 11-OCT-2023
DEFINITION  Mus musculus spermatogenesis associated glutamate (E)-rich protein
            4E2 (Speer4e2), mRNA.
ACCESSION   NM_001281514 XM_003084616
VERSION     NM_001281514.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 795)
  AUTHORS   Carninci P, Kasukawa T, Katayama S, Gough J, Frith MC, Maeda N,
            Oyama R, Ravasi T, Lenhard B, Wells C, Kodzius R, Shimokawa K,
            Bajic VB, Brenner SE, Batalov S, Forrest AR, Zavolan M, Davis MJ,
            Wilming LG, Aidinis V, Allen JE, Ambesi-Impiombato A, Apweiler R,
            Aturaliya RN, Bailey TL, Bansal M, Baxter L, Beisel KW, Bersano T,
            Bono H, Chalk AM, Chiu KP, Choudhary V, Christoffels A, Clutterbuck
            DR, Crowe ML, Dalla E, Dalrymple BP, de Bono B, Della Gatta G, di
            Bernardo D, Down T, Engstrom P, Fagiolini M, Faulkner G, Fletcher
            CF, Fukushima T, Furuno M, Futaki S, Gariboldi M, Georgii-Hemming
            P, Gingeras TR, Gojobori T, Green RE, Gustincich S, Harbers M,
            Hayashi Y, Hensch TK, Hirokawa N, Hill D, Huminiecki L, Iacono M,
            Ikeo K, Iwama A, Ishikawa T, Jakt M, Kanapin A, Katoh M, Kawasawa
            Y, Kelso J, Kitamura H, Kitano H, Kollias G, Krishnan SP, Kruger A,
            Kummerfeld SK, Kurochkin IV, Lareau LF, Lazarevic D, Lipovich L,
            Liu J, Liuni S, McWilliam S, Madan Babu M, Madera M, Marchionni L,
            Matsuda H, Matsuzawa S, Miki H, Mignone F, Miyake S, Morris K,
            Mottagui-Tabar S, Mulder N, Nakano N, Nakauchi H, Ng P, Nilsson R,
            Nishiguchi S, Nishikawa S, Nori F, Ohara O, Okazaki Y, Orlando V,
            Pang KC, Pavan WJ, Pavesi G, Pesole G, Petrovsky N, Piazza S, Reed
            J, Reid JF, Ring BZ, Ringwald M, Rost B, Ruan Y, Salzberg SL,
            Sandelin A, Schneider C, Schonbach C, Sekiguchi K, Semple CA, Seno
            S, Sessa L, Sheng Y, Shibata Y, Shimada H, Shimada K, Silva D,
            Sinclair B, Sperling S, Stupka E, Sugiura K, Sultana R, Takenaka Y,
            Taki K, Tammoja K, Tan SL, Tang S, Taylor MS, Tegner J, Teichmann
            SA, Ueda HR, van Nimwegen E, Verardo R, Wei CL, Yagi K, Yamanishi
            H, Zabarovsky E, Zhu S, Zimmer A, Hide W, Bult C, Grimmond SM,
            Teasdale RD, Liu ET, Brusic V, Quackenbush J, Wahlestedt C, Mattick
            JS, Hume DA, Kai C, Sasaki D, Tomaru Y, Fukuda S, Kanamori-Katayama
            M, Suzuki M, Aoki J, Arakawa T, Iida J, Imamura K, Itoh M, Kato T,
            Kawaji H, Kawagashira N, Kawashima T, Kojima M, Kondo S, Konno H,
            Nakano K, Ninomiya N, Nishio T, Okada M, Plessy C, Shibata K,
            Shiraki T, Suzuki S, Tagami M, Waki K, Watahiki A, Okamura-Oho Y,
            Suzuki H, Kawai J and Hayashizaki Y.
  CONSRTM   FANTOM Consortium; RIKEN Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The transcriptional landscape of the mammalian genome
  JOURNAL   Science 309 (5740), 1559-1563 (2005)
   PUBMED   16141072
  REMARK    Erratum:[Science. 2006 Mar 24;311(5768):1713]
REFERENCE   2  (bases 1 to 795)
  AUTHORS   Spiess AN, Walther N, Muller N, Balvers M, Hansis C and Ivell R.
  TITLE     SPEER--a new family of testis-specific genes from the mouse
  JOURNAL   Biol Reprod 68 (6), 2044-2054 (2003)
   PUBMED   12606357
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CJ042498.1 and AC144480.5.
            
            On Jul 31, 2013 this sequence version replaced XM_003084616.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            CCDS Note: This gene is a member of the Speer gene family described
            in PMID:12606357. Since there are no full-length transcripts with
            best hits to this family member, the exon combination of this CCDS
            is inferred based on partial transcript alignments (e.g.,
            CJ042498.1, CJ047480.1) and on paralogous transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189685.170664.1,
                                           SRR5189685.28158.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-109               CJ042498.1         2-110
            110-162             AC144480.5         29476-29528
            163-390             CJ042498.1         164-391
            391-467             AC144480.5         31991-32067
            468-651             AC144480.5         32698-32881
            652-795             AC144480.5         33626-33769
FEATURES             Location/Qualifiers
     source          1..795
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 6.48 cM"
     gene            1..795
                     /gene="Speer4e2"
                     /gene_synonym="Gm10354"
                     /note="spermatogenesis associated glutamate (E)-rich
                     protein 4E2"
                     /db_xref="GeneID:100503549"
                     /db_xref="MGI:MGI:3809109"
     exon            1..163
                     /gene="Speer4e2"
                     /gene_synonym="Gm10354"
                     /inference="alignment:Splign:2.1.0"
     CDS             25..795
                     /gene="Speer4e2"
                     /gene_synonym="Gm10354"
                     /codon_start=1
                     /product="spermatogenesis associated glutamate (E)-rich
                     protein-like"
                     /protein_id="NP_001268443.1"
                     /db_xref="CCDS:CCDS59668.1"
                     /db_xref="GeneID:100503549"
                     /db_xref="MGI:MGI:3809109"
                     /translation="MALFARLCRLFQRANVDGRETREGRKDADLPSESNEGRRRGTWR
                     MCMALRQTSSPVPVISKKQFEKEEKKLIKEIQLTMEETNELRDRLIYVTEGSMNKRPY
                     HRQNPLYEKLKLKEKEIMTFLHNLEMENMEAKETKQELKKETHFYHNLHSRLLMEENL
                     IKKKLMPLQQESKEVQADWAIIHQRLVELNLSGKDEQEENSNLETPEYQVSETARELG
                     LATAEEDSILQNELPGQEAPAEHHLQHPQSSSDESSSI"
     exon            164..323
                     /gene="Speer4e2"
                     /gene_synonym="Gm10354"
                     /inference="alignment:Splign:2.1.0"
     exon            324..467
                     /gene="Speer4e2"
                     /gene_synonym="Gm10354"
                     /inference="alignment:Splign:2.1.0"
     exon            468..651
                     /gene="Speer4e2"
                     /gene_synonym="Gm10354"
                     /inference="alignment:Splign:2.1.0"
     exon            652..795
                     /gene="Speer4e2"
                     /gene_synonym="Gm10354"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtcagaggc tggacattgc agtgatggcc ttgtttgccc gactctgcag actttttcag
       61 agagccaatg tggatgggag agagaccaga gaggggagga aggatgctga ccttccatct
      121 gagagtaatg aaggacgaag gagggggact tggcgaatgt gcatggctct cagacagaca
      181 tcatcccctg tacctgtcat aagcaagaag cagtttgaga aggaagagaa aaagctgatc
      241 aaagagatcc agctcactat ggaggagaca aatgagctga gagatcgcct gatctacgtg
      301 accgagggat ccatgaacaa gaggccctac cacaggcaaa atccccttta tgaaaaattg
      361 aagttaaagg agaaggagat catgacattt ctacacaact tagagatgga gaacatggag
      421 gccaaagaga ccaagcagga gctcaagaag gagacacatt tctatcataa cctgcacagc
      481 cggctcctga tggaggagaa tcttataaag aagaagttga tgccattgca gcaggagagc
      541 aaggaagtac aggctgattg ggccatcatt caccaacgtt tggtggaatt gaacctgagt
      601 ggtaaagacg aacaggagga gaacagcaat cttgagactc cagaatatca ggtctcagaa
      661 actgcaagag agctgggatt ggccacagct gaagaagaca gcatcctgca gaatgagttg
      721 ccaggccagg aggcccctgc tgagcaccat ctccagcacc cacaatcttc ctcggatgaa
      781 tcttcttcca tataa
//
