LOCUS       NM_001281511            1190 bp    mRNA    linear   ROD 11-OCT-2023
DEFINITION  Mus musculus spermatogenesis associated glutamate (E)-rich protein
            4C1 (Speer4c1), mRNA.
ACCESSION   NM_001281511 XM_003085503
VERSION     NM_001281511.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1190)
  AUTHORS   Spiess AN, Walther N, Muller N, Balvers M, Hansis C and Ivell R.
  TITLE     SPEER--a new family of testis-specific genes from the mouse
  JOURNAL   Biol Reprod 68 (6), 2044-2054 (2003)
   PUBMED   12606357
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK006011.1, AC117685.9 and BB015819.1.
            
            On Jul 31, 2013 this sequence version replaced XM_003085503.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            CCDS Note: This gene is a member of the Speer gene family described
            in PMID:12606357. Since there are no full-length transcripts with
            best hits to this family member, the exon combination of this CCDS
            is inferred based on partial transcript alignments (e.g.,
            AK006011.1, BB015819.1) and on paralogous transcript alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN00849384
                              [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-55                AK006011.1         2-56
            56-184              AC117685.9         63681-63809
            185-247             AK006011.1         186-248
            248-331             AC117685.9         64888-64971
            332-387             AK006011.1         333-388
            388-512             AC117685.9         66248-66372
            513-696             AC117685.9         66972-67155
            697-943             AC117685.9         67899-68145
            944-1190            BB015819.1         2-248
FEATURES             Location/Qualifiers
     source          1..1190
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 6.52 cM"
     gene            1..1190
                     /gene="Speer4c1"
                     /gene_synonym="4933431D05Rik; SPEER-4C; Speer4c"
                     /note="spermatogenesis associated glutamate (E)-rich
                     protein 4C1"
                     /db_xref="GeneID:100502967"
                     /db_xref="MGI:MGI:1914023"
     exon            1..208
                     /gene="Speer4c1"
                     /gene_synonym="4933431D05Rik; SPEER-4C; Speer4c"
                     /inference="alignment:Splign:2.1.0"
     CDS             70..840
                     /gene="Speer4c1"
                     /gene_synonym="4933431D05Rik; SPEER-4C; Speer4c"
                     /note="sperm-associated glutamate (E)-rich protein 4c;
                     spermatogenic-associated glutamate (E)-rich protein 4c"
                     /codon_start=1
                     /product="spermatogenesis associated glutamate (E)-rich
                     protein 4c"
                     /protein_id="NP_001268440.1"
                     /db_xref="CCDS:CCDS59669.1"
                     /db_xref="GeneID:100502967"
                     /db_xref="MGI:MGI:1914023"
                     /translation="MALFAQLCRLFQRANVDGRETREGRKDADLPSESNEGRRRWTWR
                     MWMALRQTSSPVPVISKKQFEKEEKKLIKEIQLTTEETNELRDRLIYVTEGSMNKRPY
                     HRQNPLYEKLKLKEKEIMTFLHNLEMENMEAQENKQELKKETHFYRNLHSRLLMEENL
                     IKKKSMTLQQESKEVQADWAIIHQRLVELNLSGKDEQEENSNLETPEYQVSETARELG
                     LATAEEDSILQNELPGQEAPAEHHLQHPQSSSDESSSI"
     exon            209..368
                     /gene="Speer4c1"
                     /gene_synonym="4933431D05Rik; SPEER-4C; Speer4c"
                     /inference="alignment:Splign:2.1.0"
     exon            369..512
                     /gene="Speer4c1"
                     /gene_synonym="4933431D05Rik; SPEER-4C; Speer4c"
                     /inference="alignment:Splign:2.1.0"
     exon            513..696
                     /gene="Speer4c1"
                     /gene_synonym="4933431D05Rik; SPEER-4C; Speer4c"
                     /inference="alignment:Splign:2.1.0"
     exon            697..1190
                     /gene="Speer4c1"
                     /gene_synonym="4933431D05Rik; SPEER-4C; Speer4c"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gatgtcacca gtgttgtagt gacaacaaac tcactgagat ttctcagtca gaggctggac
       61 attgcagtga tggccttgtt tgcccaactc tgcagacttt ttcagagagc caatgtggat
      121 gggagagaga ccagagaggg gaggaaggat gctgaccttc catctgagag taatgaagga
      181 cgaaggaggt ggacttggcg aatgtggatg gctctcagac agacatcatc ccctgtacct
      241 gtcataagca agaagcagtt tgagaaggaa gagaaaaagc tgatcaaaga gatccagctc
      301 actaccgagg agacaaatga gctgagagat cgcctgatct acgtgaccga gggatccatg
      361 aacaagaggc cctaccacag gcaaaatccc ctttatgaaa aactgaagtt aaaggagaag
      421 gagatcatga catttctaca caacttagag atggagaaca tggaggccca agagaacaag
      481 caggagctca agaaggagac acatttctat cgtaacctgc acagccggct cctgatggag
      541 gagaatctta taaagaagaa gtctatgaca ttgcagcagg agagcaagga agtacaggct
      601 gattgggcca tcattcacca acgtttggtg gaattgaacc tgagtggtaa agacgaacag
      661 gaggagaaca gcaatcttga gactccagaa tatcaggtct cagaaactgc aagagagctg
      721 ggattggcca cagctgaaga agacagcatc ctgcagaatg agttgccagg ccaggaggcc
      781 cctgctgagc accatctcca gcacccacaa tcttcctcgg atgaatcttc ttccatataa
      841 ttcattttct tagggtgaat aggcctttac taggaagcca tggctgattc agggcattgt
      901 tcccttttct cttcagacaa caactcttgg cagagaactg aggtgactgc actgccacca
      961 agtgtccaag aggagcagca ggctggaggg ctgtgctgct aaaagtgcag aaaaagctga
     1021 acaataattt tctgtttggt ttttgttctt tgagtgttga tatgttattt agaagttata
     1081 tgttcttgtt cttgtatttc attgtttgtt tttgccttca actctatatt aattgaactt
     1141 ttaaaacctt tttttaaaat tttatttctt atgaataaaa attgatttgc
//
