LOCUS       NM_144882               3932 bp    mRNA    linear   ROD 03-JUN-2024
DEFINITION  Mus musculus spermatogenesis associated, serine-rich 2-like
            (Spats2l), transcript variant 1, mRNA.
ACCESSION   NM_144882
VERSION     NM_144882.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3932)
  AUTHORS   Sharov,A.A., Piao,Y., Matoba,R., Dudekula,D.B., Qian,Y.,
            VanBuren,V., Falco,G., Martin,P.R., Stagg,C.A., Bassey,U.C.,
            Wang,Y., Carter,M.G., Hamatani,T., Aiba,K., Akutsu,H., Sharova,L.,
            Tanaka,T.S., Kimber,W.L., Yoshikawa,T., Jaradat,S.A., Pantano,S.,
            Nagaraja,R., Boheler,K.R., Taub,D., Hodes,R.J., Longo,D.L.,
            Schlessinger,D., Keller,J., Klotz,E., Kelsoe,G., Umezawa,A.,
            Vescovi,A.L., Rossant,J., Kunath,T., Hogan,B.L., Curci,A.,
            D'Urso,M., Kelso,J., Hide,W. and Ko,M.S.
  TITLE     Transcriptome analysis of mouse stem cells and early embryos
  JOURNAL   PLoS Biol 1 (3), E74 (2003)
   PUBMED   14691545
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC157804.7, BY317793.1, AK032169.1, AC110735.6 and BY634273.1.
            
            On Sep 2, 2009 this sequence version replaced NM_144882.3.
            
            Transcript Variant: This variant (1) encodes the longest isoform
            (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK032169.1, BC021879.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849380, SAMN00849381
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-8                 AC157804.7         137897-137904
            9-67                BY317793.1         2-60
            68-2503             AK032169.1         3-2438
            2504-2504           AC110735.6         92125-92125
            2505-3929           AK032169.1         2440-3864
            3930-3932           BY634273.1         379-381
FEATURES             Location/Qualifiers
     source          1..3932
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 28.85 cM"
     gene            1..3932
                     /gene="Spats2l"
                     /gene_synonym="2810022L02Rik; A230104H11Rik"
                     /note="spermatogenesis associated, serine-rich 2-like"
                     /db_xref="GeneID:67198"
                     /db_xref="MGI:MGI:1914448"
     exon            1..164
                     /gene="Spats2l"
                     /gene_synonym="2810022L02Rik; A230104H11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            165..214
                     /gene="Spats2l"
                     /gene_synonym="2810022L02Rik; A230104H11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            215..299
                     /gene="Spats2l"
                     /gene_synonym="2810022L02Rik; A230104H11Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             262..1998
                     /gene="Spats2l"
                     /gene_synonym="2810022L02Rik; A230104H11Rik"
                     /note="isoform 1 is encoded by transcript variant 1;
                     SPATS2-like protein"
                     /codon_start=1
                     /product="SPATS2-like protein isoform 1"
                     /protein_id="NP_659131.2"
                     /db_xref="CCDS:CCDS35573.2"
                     /db_xref="GeneID:67198"
                     /db_xref="MGI:MGI:1914448"
                     /translation="MAGTQETGASASKAYTPRRKMAELNTHVNIKEKIYAVRSVVPNK
                     SNNEIVLVLQQFDFNVDKAVQAFVDGSAIQVLKEWNMTGKKKNNKRKRSKSKQHQGNK
                     DAKDKVERPEVGPLQPQAPLVQNGHMNGCEKDSSSPDSTREKLALTPREKKISILEEP
                     PRAQRGVTEGGRLLQQKMSLDGNPRAIHGPSERSDGPQWSAGQPCNPSKPKAKTSPVK
                     SNAPAAHLEIKPDELAKKRGPNIEKSVKDLQRCTVSLTRYRVMIKEEVDSSVKKIKAA
                     FAELHNCIIDKEVSLMAEMDKVKEEAMDILTARQKKAEELKRLTDLASQMAEMQLAEL
                     RAEIKHFVSERKYDEELGKAARFSCDIEQLKAQILICGEITHPKNSYSSRTPCSSLLP
                     LLNTHAVASGKQGNFARKSSGHNKPSEGKAANPKMVSGLANTADACHQTMPTNKQQNG
                     PSSQRRRFNPQYHNRLNGPAKSQGGGNEADPMAKSNSRHEHRRQPHNGFRPKNKGGAK
                     NQEAPLGTKAPEAPPHSEKARRRQHAADNLEARPFRGNVSRVSQCNLCPSRIEVSTEA
                     TVLSVPAVTLVA"
     exon            300..360
                     /gene="Spats2l"
                     /gene_synonym="2810022L02Rik; A230104H11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            361..469
                     /gene="Spats2l"
                     /gene_synonym="2810022L02Rik; A230104H11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            470..519
                     /gene="Spats2l"
                     /gene_synonym="2810022L02Rik; A230104H11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            520..766
                     /gene="Spats2l"
                     /gene_synonym="2810022L02Rik; A230104H11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            767..973
                     /gene="Spats2l"
                     /gene_synonym="2810022L02Rik; A230104H11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            974..1109
                     /gene="Spats2l"
                     /gene_synonym="2810022L02Rik; A230104H11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1110..1168
                     /gene="Spats2l"
                     /gene_synonym="2810022L02Rik; A230104H11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1169..1278
                     /gene="Spats2l"
                     /gene_synonym="2810022L02Rik; A230104H11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1279..1381
                     /gene="Spats2l"
                     /gene_synonym="2810022L02Rik; A230104H11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1382..1602
                     /gene="Spats2l"
                     /gene_synonym="2810022L02Rik; A230104H11Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1603..3932
                     /gene="Spats2l"
                     /gene_synonym="2810022L02Rik; A230104H11Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2480..2485
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Spats2l"
                     /gene_synonym="2810022L02Rik; A230104H11Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      2500
                     /gene="Spats2l"
                     /gene_synonym="2810022L02Rik; A230104H11Rik"
                     /note="major polyA site"
ORIGIN      
        1 tccctgcgtg gggctggcgg cgcggagttg aggcagtgaa ggaatccagc ctgcccagcg
       61 gcccagcggc cctaccgccg ctttccctca gctcgctctc cgcgctgcag gggccgccag
      121 cgccgcgccc cggcccggga cagagcagcc gcgctcgcaa cgaggagact ccagaaccca
      181 ggctgctttc aggaacatct ctgtggattc ccaggtcccg tggtcagagc tgcaagccct
      241 ggtttgtccc gctgcaacta catggctgga acacaggaaa ccggcgcttc ggcaagcaag
      301 gcttataccc ctagaaggaa gatggctgaa ctcaacactc atgtgaacat caaagagaag
      361 atctacgcag ttagatcagt tgttccgaac aaaagcaata atgaaatcgt gctggtactc
      421 caacagtttg attttaatgt ggataaagcc gtacaggcct ttgtggatgg cagtgctatt
      481 caagttctta aagaatggaa catgacggga aagaagaaga ataataaaag gaagagaagc
      541 aaatccaagc agcatcaagg caacaaagat gctaaggaca aggtggagag gccagaggtg
      601 gggcccctgc agccccaggc accactggta caaaatggtc acatgaatgg ctgcgaaaag
      661 gacagctcat cccctgactc taccagagaa aaactggccc tcacaccacg tgagaaaaag
      721 atctcgatac tggaggaacc tccaagggct cagcgtgggg tcacagaagg cggcagacta
      781 ctgcagcaga aaatgtcctt agatgggaac cccagagcga ttcatggacc atcagagagg
      841 tcagatggcc cacagtggtc agctgggcag ccttgtaacc caagcaagcc taaggcaaaa
      901 acatctcctg ttaagtccaa tgcccctgca gctcatcttg aaataaagcc agatgagctg
      961 gcaaagaaaa gaggcccaaa tattgagaaa tcggtgaagg atctgcagcg ctgcactgtt
     1021 tctctgacga gataccgcgt catgatcaag gaagaagtgg acagttccgt gaagaagatc
     1081 aaagcagcat ttgctgagct acacaactgc atcattgaca aagaagtttc actgatggca
     1141 gaaatggaca aagttaaaga agaagccatg gacatcctga ctgcccgtca gaagaaagca
     1201 gaggagctga agagactgac tgacctagcc agtcagatgg cagagatgca gctggccgaa
     1261 ctcagagctg aaattaagca ctttgtcagc gaacgcaagt atgacgagga gctggggaag
     1321 gctgcccgct tctcctgtga cattgaacaa ctgaaagccc aaatcctgat ctgtggagaa
     1381 attacacatc caaagaacag ctactcctca agaactccct gcagctccct gctgcctctg
     1441 ctgaacactc atgcggtagc ttccgggaaa caggggaatt ttgcccggaa gtcatccggt
     1501 cacaacaagc cctctgaggg gaaagcagca aaccccaaaa tggtgagcgg acttgccaac
     1561 actgccgatg cgtgtcacca gaccatgccc actaacaagc agcagaatgg accttccagc
     1621 caaagacgaa gatttaatcc acagtatcac aacaggctaa atggtccagc caagtcacag
     1681 ggtggtggta atgaagcgga tcccatggcg aagagcaaca gccgccatga acacagaaga
     1741 cagccacata atggtttccg tcccaaaaac aaaggtggtg ccaaaaacca agaggccccc
     1801 ttggggacaa aggccccaga ggccccccca cattctgaaa aggcccgtcg aaggcagcat
     1861 gctgcagaca acttagaggc caggcctttc cggggtaatg ttagtagggt ttcacagtgc
     1921 aatctttgtc cctctagaat agaagtttcc acggaggcca cggtcctctc agtccccgct
     1981 gtgacgttgg tggcctgagc tgggaaagaa gagagcaggt tttgcctggc tgtggttccc
     2041 tgcccaaggt gctgacccaa tcgctgccaa aagagagtca atcagaatat ccaagtcctg
     2101 tatgtgtgtg tcatcctctt gcgatcattt ttactaatcc taatactctg ctctagcttg
     2161 cttcagaact cccgtggctt tgcttgatct gttgttgctt ctcctcatca agactttgca
     2221 tcatgttagc cagccagtat ttactcattg ttaggaaaat cgagctgtgg ctgaagaccc
     2281 gaggctcagt tagcaacctc tgttgtagct gtcaacccat tggttgtctt tagagagtta
     2341 atgttgaaac aaggaactct tggtcagaca aacgtgatca gctgaaacac gtgtgctttt
     2401 gtagagttta acatctggtg tttttctgaa atatatataa atatatatct ataaacatat
     2461 attgctttat ttgaaacaaa ttaaaatatg ctgcatttga cacctggctt gctctttcta
     2521 tcgatgccta ccttgttgaa tgttttctgt agcacctttg agaaaaggtt agagatcgga
     2581 agttcggtgc aaagctctgt ttcctttgaa ataaaaactg aagaaataat gatactccct
     2641 cagttaccat agggagaggt gctacacacc ccaatcatct cgaatgccat gtggtagttg
     2701 gaaaccttgg acataacaaa atttacctca gcctagctta cacaatagat tatgagttca
     2761 ttagccagag tccagttttc ccgatcatga tttccgctcc cttctcttaa ttctgaattc
     2821 tgtcctccat attctgacac tatattcagc atgataataa tgactaagcc cctgagcgct
     2881 ctcactggct tccgtgtggg acactggtct tgtcagaact cacagcaaaa ctctggcatg
     2941 aagttacttg ttatagacct gactgaagat cgtccatgga gtgaatgagt cagtagcata
     3001 cactagttaa cggatatttt agttagcata cccatagtcc acctgtggca ctgaagcact
     3061 gcttatgtag aggagactac tgttgcatca gggagggaga gtgggcatag agtaccccca
     3121 aaccacaggg cctcagttcc cctatctttt gactgccagg catgctttgc tgactgcttt
     3181 catgtgcaaa tgcacccttt caactccatg ttgagatttt tttctgacaa cccaggttca
     3241 ctggttcttg tcctccaaac agctgagcct gctagccaca caggcatctg tttcttcttt
     3301 tgccaagtac aggcgaatgt ttgctctctc cagagctttc tgaggtcgct gagtgtaccc
     3361 agagatttaa caggaattcc aaatgtcaag tcacattcca ggaaggaagg aagagaaacc
     3421 cattcaaata agaaaagatg aattcttggg accatagtct ctgtttaccc tgtctgagac
     3481 tctgaattta tatcttacaa atcagaagga tttttttttt ttttacacaa gttctatgta
     3541 gcaagattct gctcaacccc tgaaaaatgg cagttggaat gtggcagctg taaaggcaga
     3601 ggcagaaaat tcttacaaaa tgaaagaaaa tggctgggcc aggtaaaaaa tgtgcctgct
     3661 ttgtcagagt tcaatccagc cactcctgtc ttctcccaca ccctcaggat accctggagt
     3721 taagaaagct cagacacatt cccaagaaca tagcaaacac tcccaggtca ctggaaagaa
     3781 gcaaaagaat gataaaaagt attcagacct gatcacattg tttcctagac tttagcctta
     3841 gactctggca tgtgatcatt tttgaatttg cattttaaaa tggtaattag atactttagg
     3901 tctttgaaat aaatactctg tcacatttct tc
//
