LOCUS       NM_029661               1331 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus spermatogenesis and centriole associated 1 like
            (Spatc1l), transcript variant 1, mRNA.
ACCESSION   NM_029661
VERSION     NM_029661.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1331)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1331)
  AUTHORS   Kim,J., Kwon,J.T., Jeong,J., Kim,J., Hong,S.H., Kim,J., Park,Z.Y.,
            Chung,K.H., Eddy,E.M. and Cho,C.
  TITLE     SPATC1L maintains the integrity of the sperm head-tail junction
  JOURNAL   EMBO Rep 19 (9) (2018)
   PUBMED   30026308
  REMARK    GeneRIF: these results implicate the SPATC1L-PKA complex in
            maintaining the stability of the sperm head-tail junction, thereby
            revealing a new molecular basis for sperm head-tail integrity.
REFERENCE   3  (bases 1 to 1331)
  AUTHORS   Endoh-Yamagami,S., Karkar,K.M., May,S.R., Cobos,I., Thwin,M.T.,
            Long,J.E., Ashique,A.M., Zarbalis,K., Rubenstein,J.L. and
            Peterson,A.S.
  TITLE     A mutation in the pericentrin gene causes abnormal interneuron
            migration to the olfactory bulb in mice
  JOURNAL   Dev Biol 340 (1), 41-53 (2010)
   PUBMED   20096683
REFERENCE   4  (bases 1 to 1331)
  AUTHORS   Hong,S., Choi,I., Woo,J.M., Oh,J., Kim,T., Choi,E., Kim,T.W.,
            Jung,Y.K., Kim,D.H., Sun,C.H., Yi,G.S., Eddy,E.M. and Cho,C.
  TITLE     Identification and integrative analysis of 28 novel genes
            specifically expressed and developmentally regulated in murine
            spermatogenic cells
  JOURNAL   J Biol Chem 280 (9), 7685-7693 (2005)
   PUBMED   15613475
REFERENCE   5  (bases 1 to 1331)
  AUTHORS   Gitton,Y., Dahmane,N., Baik,S., Ruiz i Altaba,A., Neidhardt,L.,
            Scholze,M., Herrmann,B.G., Kahlem,P., Benkahla,A., Schrinner,S.,
            Yildirimman,R., Herwig,R., Lehrach,H. and Yaspo,M.L.
  CONSRTM   HSA21 expression map initiative
  TITLE     A gene expression map of human chromosome 21 orthologues in the
            mouse
  JOURNAL   Nature 420 (6915), 586-590 (2002)
   PUBMED   12466855
REFERENCE   6  (bases 1 to 1331)
  AUTHORS   Reymond,A., Marigo,V., Yaylaoglu,M.B., Leoni,A., Ucla,C.,
            Scamuffa,N., Caccioppoli,C., Dermitzakis,E.T., Lyle,R., Banfi,S.,
            Eichele,G., Antonarakis,S.E. and Ballabio,A.
  TITLE     Human chromosome 21 gene expression atlas in the mouse
  JOURNAL   Nature 420 (6915), 582-586 (2002)
   PUBMED   12466854
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK006410.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK006410.1, BC049686.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN00849384
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1331              AK006410.1         1-1331
FEATURES             Location/Qualifiers
     source          1..1331
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 39.2 cM"
     gene            1..1331
                     /gene="Spatc1l"
                     /gene_synonym="1700022B01Rik; 1700027D21Rik"
                     /note="spermatogenesis and centriole associated 1 like"
                     /db_xref="GeneID:76573"
                     /db_xref="MGI:MGI:1923823"
     exon            1..296
                     /gene="Spatc1l"
                     /gene_synonym="1700022B01Rik; 1700027D21Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             95..1123
                     /gene="Spatc1l"
                     /gene_synonym="1700022B01Rik; 1700027D21Rik"
                     /note="isoform 1 is encoded by transcript variant 1;
                     spermatogenesis and centriole-associated protein 1-like
                     protein; speriolin-like protein"
                     /codon_start=1
                     /product="speriolin-like protein isoform 1"
                     /protein_id="NP_083937.1"
                     /db_xref="CCDS:CCDS23949.1"
                     /db_xref="GeneID:76573"
                     /db_xref="MGI:MGI:1923823"
                     /translation="MAEGSELMSRLMSENADLKKQVRLLKENQMLKRLLSESCQESCG
                     RGSRDLLYPKVPTYPEACSPGNGGPDFGRFAGVPDTPSQLPTSSLEDLLCSHAPLSSE
                     DEASPGCATTSQMPFKSFLSPSELHSRIADRKLSPLLSPLQDSLADKTLLEPREISRP
                     KKVCFSESNLPTGDRSRRTYYLNEIQSFSGAEKDGRIVGEIAFQLDRRILAYVFPGVT
                     RLYGFTVSNIPEKIKQTSIKSLDGSVDEKKLRELTHRYLTLTARLEKLGYSREVHPVF
                     SEFLINTYGILKQRPDLRANPLHSSPAALRKLVIDIVPPKFLGDSLLLLNCLCELSKE
                     DSKPLFAW"
     exon            297..644
                     /gene="Spatc1l"
                     /gene_synonym="1700022B01Rik; 1700027D21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            645..796
                     /gene="Spatc1l"
                     /gene_synonym="1700022B01Rik; 1700027D21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            797..1331
                     /gene="Spatc1l"
                     /gene_synonym="1700022B01Rik; 1700027D21Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1147..1152
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Spatc1l"
                     /gene_synonym="1700022B01Rik; 1700027D21Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1167
                     /gene="Spatc1l"
                     /gene_synonym="1700022B01Rik; 1700027D21Rik"
                     /note="major polyA site"
ORIGIN      
        1 gaactccgtg gccttaggct gtttctgtgg ggtcttcggg ctctgtattt ccatctccat
       61 ggggccacag gcccatgtgt gagtacctga caccatggca gagggtagcg aactgatgag
      121 caggctcatg agtgagaacg cagacctgaa gaagcaggtg cgcctcctga aggagaacca
      181 gatgctgaag agactgctca gtgagagttg ccaggagagc tgtggtcgag ggagccggga
      241 cctactctat cccaaggtcc ctacctaccc tgaggcctgc tccccaggga atggaggtcc
      301 agattttgga aggtttgccg gtgtccctga cacgccctcc cagctaccga catcctctct
      361 ggaggaccta ctatgctccc acgccccact ctccagtgag gacgaagcct ccccaggctg
      421 tgcaaccacc tctcagatgc ctttcaagtc cttcctcagc ccttcagaac tacactcgcg
      481 gattgcagac aggaagctgt ccccgctcct gagtcccttg caggactccc tggctgacaa
      541 aacactgctt gagcccaggg aaatctcgag acctaagaag gtgtgcttct cggagagtaa
      601 cctccccact ggggatagga gcaggaggac ctattacctc aatgagatcc agagtttttc
      661 gggtgctgag aaggatggcc gaatcgttgg ggagatcgcg ttccagcttg accggcgtat
      721 cctggcctat gtgttcccag gggtgactcg cctctacggt ttcacagtgt ccaacattcc
      781 tgagaagatc aagcagacct ctatcaagtc cctagatggc tccgtggatg agaagaagct
      841 gcgtgagctg acgcatcgct atctgactct gacggcacgg ctggagaagc tgggctacag
      901 ccgcgaagtg cacccggtgt tcagtgagtt tctcatcaat acctatggca tcctgaagca
      961 gcgtccagac ttgcgggcca acccactgca cagcagcccg gctgccctgc gcaaactagt
     1021 cattgacatt gtgccgccca agttcctggg tgactccctg ctactgctga attgcctatg
     1081 tgagctttcc aaggaggaca gtaaaccact ctttgcctgg tgagccgctt gcctcaccct
     1141 tccggcaata aacgtgtttg ttccaaaccc gggggccacc cgcgtcctcc cgcatggaag
     1201 ctgtctgccc agctacagtg gggagaggcc tcctccacgt ctgcgcttgc ccagggcatc
     1261 cagccgcccg gactgcgcac agccaacggg cacctgttgc cttattaaaa gcttatttat
     1321 ttgtttgcct t
//
