LOCUS       NM_029343               1053 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus spermatogenesis associated 9 (Spata9), mRNA.
ACCESSION   NM_029343
VERSION     NM_029343.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1053)
  AUTHORS   Miyata,H., Castaneda,J.M., Fujihara,Y., Yu,Z., Archambeault,D.R.,
            Isotani,A., Kiyozumi,D., Kriseman,M.L., Mashiko,D., Matsumura,T.,
            Matzuk,R.M., Mori,M., Noda,T., Oji,A., Okabe,M.,
            Prunskaite-Hyyrylainen,R., Ramirez-Solis,R., Satouh,Y., Zhang,Q.,
            Ikawa,M. and Matzuk,M.M.
  TITLE     Genome engineering uncovers 54 evolutionarily conserved and
            testis-enriched genes that are not required for male fertility in
            mice
  JOURNAL   Proc Natl Acad Sci U S A 113 (28), 7704-7710 (2016)
   PUBMED   27357688
REFERENCE   2  (bases 1 to 1053)
  AUTHORS   Cheng,L.J., Li,J.M., Chen,J., Ge,Y.H., Yu,Z.R., Han,D.S., Zhou,Z.M.
            and Sha,J.H.
  TITLE     NYD-SP16, a novel gene associated with spermatogenesis of human
            testis
  JOURNAL   Biol Reprod 68 (1), 190-198 (2003)
   PUBMED   12493713
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AC122242.2.
            
            On Apr 30, 2007 this sequence version replaced NM_029343.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK006554.1, BC048558.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384, SAMN01164138
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-156               AC122242.2         154409-154564       c
            157-245             AC122242.2         154160-154248       c
            246-473             AC122242.2         144526-144753       c
            474-569             AC122242.2         129194-129289       c
            570-1053            AC122242.2         123335-123818       c
FEATURES             Location/Qualifiers
     source          1..1053
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="13"
                     /map="13 40.95 cM"
     gene            1..1053
                     /gene="Spata9"
                     /gene_synonym="1700030K01Rik; 4930599C08Rik;
                     A930023H06Rik"
                     /note="spermatogenesis associated 9"
                     /db_xref="GeneID:75571"
                     /db_xref="MGI:MGI:1922821"
     exon            1..156
                     /gene="Spata9"
                     /gene_synonym="1700030K01Rik; 4930599C08Rik;
                     A930023H06Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             96..854
                     /gene="Spata9"
                     /gene_synonym="1700030K01Rik; 4930599C08Rik;
                     A930023H06Rik"
                     /codon_start=1
                     /product="spermatogenesis-associated protein 9"
                     /protein_id="NP_083619.1"
                     /db_xref="CCDS:CCDS26653.1"
                     /db_xref="GeneID:75571"
                     /db_xref="MGI:MGI:1922821"
                     /translation="MEVRPIGWICGQVVKNFSGRLEGLQKAIMDLIDEFKDDLPTILR
                     LSQSSQKTDPVQKTSKVRMALALAKINRGTLIQGLNHISSSSKSVAKLLQPRLAYRLL
                     ELRSISHRLLREVNVASQPLHSVQMKRGSLFEIISFPAKTALTSIMYASYAALIYLAV
                     CVNAVLAKIKKIFQEEESIRQNRESENFRKAFSEPALRKPMFSESEIKAKPYRSLPEK
                     PDNLLDQPKPPANKQSNKIQVLHSVFDQLAELNE"
     exon            157..245
                     /gene="Spata9"
                     /gene_synonym="1700030K01Rik; 4930599C08Rik;
                     A930023H06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            246..473
                     /gene="Spata9"
                     /gene_synonym="1700030K01Rik; 4930599C08Rik;
                     A930023H06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            474..569
                     /gene="Spata9"
                     /gene_synonym="1700030K01Rik; 4930599C08Rik;
                     A930023H06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            570..1053
                     /gene="Spata9"
                     /gene_synonym="1700030K01Rik; 4930599C08Rik;
                     A930023H06Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      857..862
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Spata9"
                     /gene_synonym="1700030K01Rik; 4930599C08Rik;
                     A930023H06Rik"
                     /note="hexamer: AATACA"
     polyA_site      875
                     /gene="Spata9"
                     /gene_synonym="1700030K01Rik; 4930599C08Rik;
                     A930023H06Rik"
                     /note="major polyA site"
ORIGIN      
        1 gaaccaacag gttctgtcct tgctggtctg agtggaggac atcctatccc aggcctacaa
       61 ctcactaaac gtgtggaacc aagttacagc tcatcatgga agtcagacct attgggtgga
      121 tctgtggaca ggtggtgaag aacttctctg gaagacttga ggggctccag aaggcaatca
      181 tggaccttat tgatgagttt aaagatgatc tccctaccat cttaagatta tcacagtcta
      241 gccagaaaac agatccagtg cagaaaacat ccaaggtcag aatggccctc gccttagcca
      301 agatcaaccg tgggacgctc attcaagggt taaaccacat atccagctcc tccaagtcag
      361 tggccaagct tctgcagccg cggctggcat acagactcct agaactgagg agcatctctc
      421 accggttgct gagagaagtg aatgtggcga gtcaacccct gcacagcgta cagatgaaaa
      481 ggggttcttt gtttgaaatc atttctttcc cagcaaaaac tgctttaact agcataatgt
      541 atgcttctta tgcagcacta atttatttgg cagtctgtgt taatgcggtg ctggcaaaga
      601 taaagaagat tttccaagaa gaagaatcca ttaggcaaaa tagagagagc gagaatttta
      661 ggaaagcctt ctctgagccc gcgctccgaa agcccatgtt ttctgaaagt gaaatcaaag
      721 caaaacctta caggtcgttg ccagagaagc cagacaacct tttagatcaa cccaagcctc
      781 ctgccaacaa gcagagtaac aagatccagg ttttacattc tgtgtttgac caattggctg
      841 aattgaatga atgagaaata caaacacaaa taccacttta gagtgctcaa tagttatcta
      901 tccacaggta aatttcatca gacataccag aggaccaatt tatataagct gaatgtaaat
      961 ttaagaaggg acagggtagg gaaaactatg acatcatcct cttgtatcat tgtattttct
     1021 atatggcata gaaaataaaa tgaatcttga tgt
//
