LOCUS       NM_001374140            1931 bp    mRNA    linear   ROD 09-JUN-2024
DEFINITION  Mus musculus spermatogenesis associated 6 like (Spata6l),
            transcript variant 2, mRNA.
ACCESSION   NM_001374140 XM_006527158
VERSION     NM_001374140.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1931)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC113961.14.
            
            On Oct 28, 2019 this sequence version replaced XM_006527158.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189685.160472.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-30                AC113961.14        106627-106656
            31-106              AC113961.14        106790-106865
            107-244             AC113961.14        110786-110923
            245-293             AC113961.14        114731-114779
            294-335             AC113961.14        120328-120369
            336-460             AC113961.14        125716-125840
            461-541             AC113961.14        128628-128708
            542-772             AC113961.14        130005-130235
            773-875             AC113961.14        132645-132747
            876-910             AC113961.14        135290-135324
            911-1098            AC113961.14        136040-136227
            1099-1183           AC113961.14        145827-145911
            1184-1285           AC113961.14        146709-146810
            1286-1931           AC113961.14        150757-151402
FEATURES             Location/Qualifiers
     source          1..1931
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="19"
                     /map="19 23.57 cM"
     gene            1..1931
                     /gene="Spata6l"
                     /gene_synonym="4430402I18Rik"
                     /note="spermatogenesis associated 6 like"
                     /db_xref="GeneID:381218"
                     /db_xref="MGI:MGI:1918036"
     exon            1..30
                     /gene="Spata6l"
                     /gene_synonym="4430402I18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            31..106
                     /gene="Spata6l"
                     /gene_synonym="4430402I18Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             68..1273
                     /gene="Spata6l"
                     /gene_synonym="4430402I18Rik"
                     /note="isoform 1 is encoded by transcript variant 2;
                     spermatogenesis associated 6-like protein"
                     /codon_start=1
                     /product="spermatogenesis associated 6-like protein
                     isoform 1"
                     /protein_id="NP_001361069.1"
                     /db_xref="GeneID:381218"
                     /db_xref="MGI:MGI:1918036"
                     /translation="MPMEVVVELQIRAISCPGVFLPDKEAVYLGVYLLNQYLETDCFP
                     PVFPVVIQQSMRFVKVFEEAIDPGAVAELLESFLTRFELVQLVSPAWEELAYYEKNTR
                     DFLFPEPRLASSHLGMQREVLMKTAIWFPGIAPKIEFSTRTAILECVFPCKNRFICEE
                     RCRLERSVSKSHGQRVQATNRKKKPKEKDSDQLPKGTQSRLPSPQRLHLHRPTQRNHG
                     KSFKFPGERKPPFVVRHVDSGNPFGENNLEHCSKKSRRKPKLINFDLSKKRASSLDSL
                     EANIKVIREPDERIVLKSQPPPPVDSSESRKPSLSHQGDASLHTETSVTTSQLSRPPS
                     PLNQPLLQERFQPFSQSTWQKIPEGVRSLLTSHRAHPKDSFISETNSIHERPSYPLKK
                     HLLRAQRYF"
     exon            107..244
                     /gene="Spata6l"
                     /gene_synonym="4430402I18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            245..293
                     /gene="Spata6l"
                     /gene_synonym="4430402I18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            294..335
                     /gene="Spata6l"
                     /gene_synonym="4430402I18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            336..460
                     /gene="Spata6l"
                     /gene_synonym="4430402I18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            461..541
                     /gene="Spata6l"
                     /gene_synonym="4430402I18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            542..772
                     /gene="Spata6l"
                     /gene_synonym="4430402I18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            773..875
                     /gene="Spata6l"
                     /gene_synonym="4430402I18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            876..910
                     /gene="Spata6l"
                     /gene_synonym="4430402I18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            911..1098
                     /gene="Spata6l"
                     /gene_synonym="4430402I18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1099..1183
                     /gene="Spata6l"
                     /gene_synonym="4430402I18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1184..1285
                     /gene="Spata6l"
                     /gene_synonym="4430402I18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1286..1931
                     /gene="Spata6l"
                     /gene_synonym="4430402I18Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1435..1440
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Spata6l"
                     /gene_synonym="4430402I18Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      1458
                     /gene="Spata6l"
                     /gene_synonym="4430402I18Rik"
                     /note="major polyA site"
     regulatory      1771..1776
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Spata6l"
                     /gene_synonym="4430402I18Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      1793
                     /gene="Spata6l"
                     /gene_synonym="4430402I18Rik"
     regulatory      1909..1914
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Spata6l"
                     /gene_synonym="4430402I18Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1931
                     /gene="Spata6l"
                     /gene_synonym="4430402I18Rik"
ORIGIN      
        1 agccttctga aagctcacac tccaaagctt gctcagcaca aaggatcttt gcggtgcaca
       61 gggaaggatg cctatggagg tggtggtgga gctccaaatc cgggcgattt cttgccccgg
      121 agtgttcctg ccggacaagg aagctgtgta ccttggagtc taccttctga atcagtacct
      181 ggagacagac tgctttcccc ctgtgttccc tgttgtgatt caacagagca tgagatttgt
      241 aaaggtattt gaagaggcaa tagatcctgg agctgtcgca gaacttttag aaagcttcct
      301 aaccaggttt gaattagtac agctagtgtc tccagcatgg gaagagttgg cctactatga
      361 aaaaaacacc cgagatttcc tgttccctga gcccaggctg gcgtcctcac accttggcat
      421 gcagagggag gtgctcatga agacagctat ttggtttcca ggcattgctc ccaaaataga
      481 gttttctaca aggacagcca tcctagaatg tgtgttcccg tgtaaaaaca gattcatttg
      541 tgaagaaagg tgtagattgg aaagatctgt ctcaaaatct cacggacaga gagtccaggc
      601 aactaacagg aaaaagaagc caaaggaaaa agattctgac caactcccca aagggacaca
      661 gtcccggtta ccctcccctc aacgtcttca tctccatcgg ccgactcaac gcaaccatgg
      721 gaaaagcttc aagttcccgg gagaaaggaa acctccattt gtggttagac atgtggacag
      781 tgggaaccca tttggtgaaa ataatttgga gcactgttcg aagaagtcca gaagaaaacc
      841 taagttaata aactttgatc tttcgaagaa aagagcatct tctcttgaca gcctggaggc
      901 gaacataaag gttatccgag agccagatga gcggattgtc ttaaagagcc agccaccacc
      961 acctgtagat tcaagtgagt ccagaaagcc ctcgctcagt caccaaggag atgccagttt
     1021 gcacacagaa acttcagtta ccacctcaca actctccaga cctcccagcc ctctgaatca
     1081 acctcttctc caagaaaggt tccagccttt ttctcagtcc acgtggcaga agatccccga
     1141 gggtgtacga agccttctga catcccaccg agctcaccca aaggacagct ttatctctga
     1201 aacaaattct atccatgaaa gaccaagcta ccctctgaag aaacacttac tgcgtgcaca
     1261 gagatatttt taactcctat ctcacgggaa cacggatgac ggatgaagag ttcactcagc
     1321 aagacactga cattcgaaca ccatcccctg ttatctgggt tgacttcctg gtgcctagcc
     1381 cttgttaatt caaaccttat actcggtctt ttgtgcccaa ggtaagaatt gttgattaaa
     1441 ttctgtctgg ggctctcatt cacttgtcac ctggagaatt tgtgtcttcc cttgtattta
     1501 ttttgagcat gaaaaataga aaaaaaacat aattagaagt aattcatgac cgggggcttt
     1561 tccatttgca aatcattttt taaaattgta acaaacacat ttaaaaaatt gtagcaaata
     1621 tgtcttacgt gagacagggc attgattatt ttgggagata ccctgataag tcaactggga
     1681 aaagaccatc aacttggttt tctctttctg ataaatgtga attttgtgtt tcattttctc
     1741 atgttaggct caaatgacat caagtccctt attaaagccc aagaaaaaca gtattaacat
     1801 ctgagatctc attttaacac ttaattttct aagatgaatt tgcaggagag attaatttct
     1861 gtagtttaaa ctgtttcctc ttcctatctc cccttgaaaa aaatccttaa taaacataga
     1921 tcggaaacag a
//
