LOCUS       NM_177711               3827 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus spermatogenesis associated 31 subfamily D, member 1D
            (Spata31d1d), mRNA.
ACCESSION   NM_177711
VERSION     NM_177711.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3827)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3827)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK077018.1, AC134869.4 and BX631049.1.
            
            On Apr 5, 2007 this sequence version replaced NM_177711.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK077018.1, BB616373.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-556               AK077018.1         1-556
            557-1347            AK077018.1         558-1348
            1348-3057           AK077018.1         1350-3059
            3058-3200           AK077018.1         3061-3203
            3201-3458           AK077018.1         3205-3462
            3459-3480           AK077018.1         3464-3485
            3481-3578           AC134869.4         160345-160442       c
            3579-3827           BX631049.1         4-252               c
FEATURES             Location/Qualifiers
     source          1..3827
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="13"
                     /map="13 31.87 cM"
     gene            1..3827
                     /gene="Spata31d1d"
                     /gene_synonym="4932411G14Rik; Fam75d1d"
                     /note="spermatogenesis associated 31 subfamily D, member
                     1D"
                     /db_xref="GeneID:238663"
                     /db_xref="MGI:MGI:3045260"
     exon            1..230
                     /gene="Spata31d1d"
                     /gene_synonym="4932411G14Rik; Fam75d1d"
                     /inference="alignment:Splign:2.1.0"
     CDS             33..3776
                     /gene="Spata31d1d"
                     /gene_synonym="4932411G14Rik; Fam75d1d"
                     /note="family with sequence similarity 75, member D1D"
                     /codon_start=1
                     /product="putative spermatogenesis-associated protein
                     31D3"
                     /protein_id="NP_808379.2"
                     /db_xref="CCDS:CCDS49286.1"
                     /db_xref="GeneID:238663"
                     /db_xref="MGI:MGI:3045260"
                     /translation="MKKVLSILNSSILTSAKESWLSIGSIFVDIYPKCIILSVLGLLF
                     LFLRYLILKPFLPTQTSQGVRKQQGRAKRERRASFNEFRNFHGEARERRKLQAVVQSP
                     CGQLYDPFYFRQALCQDPRCDVCNGATVKVRRLLSWASLEDCSASASSMASMASTASV
                     TEASFTLSSSLSPSPSGYQLSSFSVAPSPPPPSILSTSTFTPLEDTLLGTPQGDSLPP
                     EPTLTSTGFPLDHLLPHPLPKSPSVAHPAAQQTEGPLRPEDILSLAGSHGDQFLHATT
                     TCDALPVSYQQQPGAQSSSPSQLKCLVNQEIPNHCSSEDFWRGQASPHFTVPQKVLKI
                     LERQEESQADVLTLKDREGEAEPTAEQNLGASFPLGGSRVILSELNPQQGLAQVQSSG
                     GQLEAMPMQHFWGLPYLHSESMSCITTLSSHCSSMCIWFNRTTDSPALAPPSPLPLPE
                     RQSQTLTQSQYQSIQLATPHSQLQTLPGPSPSSQSQVRVCGVYFRRSQEAKALLQSEI
                     HHLEYNMMAKDPEREWALPSVVQKPQEELSLLPSKLSLAIKSSKLQTPRSVPPRDFPL
                     ADGFQKMFEQHLRKRLILQRWGLPQGIYKSQLWANPDPSEASKSSSGLSGFKHKDNKA
                     WPNTVSNQSGSPQEKSVSVERKTVKAHEQTLEIIQKYICSNSKTALDNSLPSDHENLQ
                     GHSGSLSDQSSETSQVSQCRKKFETPPKEHLKSHIDGTNEDQVPVTLSRLKHRPLHFK
                     PCVGKEEKKAERQSPSDIKDEDTKSVHRITVPGVQQTSVVLDTTILKESEAKKPSPDV
                     PKMLAKAGPMPVGKSLSSSKIVQGPQGTKMDDKHVFVSNKVSNIVKEQLGGLQPRPTK
                     ISKASQCKSAKDGDGNTPSTQRTQLAGRAPEGISGPPDIQASDFSCQVTREEKSESEN
                     RQPIQASEPPKVMLPVSDKLTHTPLPIHDQMPSSALTNAVQVQPQEPEMPAHSLGKGL
                     NKDSPQSAKRSWKIEGVAGPETLQPSGKIHRAQDSPTPGNHGKRPIPPSPPVKALSPP
                     EHHFRKQVKHFFQWLSPDRKCKGQEALLKRGTSPPSPAHDPEQKGRATFPGNTVAQKA
                     LRDFGKVPKEQPGHRHGAADTMRPRVPVSPPTKPVKTKPKREYCVPTDPVQGRQLHPP
                     APVSKVPSPRFHNQAAAFVDQKRCVAERARQPQKCEALQPRPSASHRESELRQNLLWS
                     RAGKVPQGTPPFAVGTMLADMSRLCEQKILAQNFRGKAFVPQK"
     exon            231..273
                     /gene="Spata31d1d"
                     /gene_synonym="4932411G14Rik; Fam75d1d"
                     /inference="alignment:Splign:2.1.0"
     exon            274..334
                     /gene="Spata31d1d"
                     /gene_synonym="4932411G14Rik; Fam75d1d"
                     /inference="alignment:Splign:2.1.0"
     exon            335..3827
                     /gene="Spata31d1d"
                     /gene_synonym="4932411G14Rik; Fam75d1d"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3806..3811
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Spata31d1d"
                     /gene_synonym="4932411G14Rik; Fam75d1d"
                     /note="hexamer: AATAAA"
     polyA_site      3827
                     /gene="Spata31d1d"
                     /gene_synonym="4932411G14Rik; Fam75d1d"
                     /note="major polyA site"
ORIGIN      
        1 agctgcctta ggcagcccct gagattcaca ctatgaaaaa ggttctctcc attctcaata
       61 gctccattct aactagcgct aaggaatcat ggttgagcat tggctccatc ttcgtggaca
      121 tttaccccaa atgcatcatt ctgagtgtac ttgggctgct gtttttgttc ctaaggtacc
      181 tgatactgaa acccttctta cccacacaga ccagccaagg agtcaggaag caacaaggca
      241 gagctaagcg ggaaaggaga gcgtcattta atgaattcag aaacttccat ggagaagctc
      301 gggagcggag gaagctgcaa gctgttgtgc aaagcccctg tgggcagctc tacgacccct
      361 tctacttccg gcaagcgctt tgtcaggatc cccgttgtga tgtgtgcaat ggagccacag
      421 tgaaggtcag gcgactgctc tcatgggcca gcctagaaga ctgctctgcc tctgcatcca
      481 gtatggcttc catggcctcc acagcttctg tgactgaggc ctcattcact ctctcttctt
      541 ccctctcccc aagcccttcg ggatatcagc tctcatcttt ttcagttgca ccttctcccc
      601 ctcctccctc cattctctca actagcacgt tcaccccctt ggaagacacc cttttgggca
      661 caccacaggg tgactctctg ccaccagagc ccactctcac aagcactggt ttcccactgg
      721 atcacctcct acctcaccca cttcccaagt ctccttccgt ggcacatcct gcagctcagc
      781 aaacagaagg gcctttaaga ccggaagaca ttctctcctt ggctggcagc catggtgacc
      841 agtttctcca tgcaacaaca acttgtgatg ccttgccagt gtcctaccag cagcagcctg
      901 gtgctcagag ctcctcccca tcccagttaa aatgcttagt taaccaagag atacccaacc
      961 actgctcttc tgaagatttt tggcggggac aagcctcacc ccatttcaca gtgccccaga
     1021 aagtcctgaa aatacttgag agacaagagg aaagccaggc tgacgttctt acactgaagg
     1081 acagggaagg agaagcagaa ccaactgctg agcagaacct aggagcctcc tttcccctag
     1141 ggggcagcag agtcatactc agcgagctca atcctcagca ggggcttgct caagtgcaga
     1201 gctctggggg ccagttagag gccatgccca tgcagcactt ctggggcctc ccttatctcc
     1261 acagcgagtc catgagctgt atcactacac tgtcatctca ctgctcttcc atgtgcatct
     1321 ggttcaacag gaccacagac tccccggccc tggctccccc ctcacctctg cccttgcctg
     1381 agagacaatc acagaccttg actcaatctc agtaccagag catccagctt gccacacccc
     1441 actcccagct tcaaacactc ccagggccgt caccgtcctc tcaatctcag gttagggttt
     1501 gcggtgtgta tttccgcaga tcccaggagg caaaagctct attgcaatcg gaaatccacc
     1561 acctagagta caacatgatg gcgaaagacc cggagaggga gtgggcttta ccctctgtgg
     1621 tccaaaaacc tcaggaagaa ctttccctcc ttccttcaaa gctctccctg gccataaagt
     1681 cctccaagct ccaaactccc aggtccgttc ctcctagaga cttccccctg gctgacgggt
     1741 tccagaagat gttcgagcag caccttcgaa agaggctcat cctacagcgc tggggcctgc
     1801 ctcaggggat ctataagtcg cagctgtggg caaatcctga cccttcagaa gcatctaaga
     1861 gcagctctgg gctctctggc tttaagcaca aagacaacaa agcctggccc aacactgtgt
     1921 cgaaccaatc tggaagcccc caagagaagt ctgtttctgt agagagaaaa acagtaaaag
     1981 cacacgaaca gactctagag attatccaaa aatatatctg cagtaactcc aagactgctc
     2041 tagacaacag cctgccatct gaccatgaga acctacaggg ccactcaggc agtctgtcag
     2101 atcaatcttc agagacctca caggtaagcc aatgtcggaa aaaatttgaa actcctccga
     2161 aagaacattt gaaaagccac atcgatggaa ccaatgagga tcaggtccct gtcactctgt
     2221 ccagattaaa gcatcgtccc cttcatttta agccatgtgt gggcaaggaa gaaaaaaagg
     2281 ctgagagaca gtcaccttct gatatcaagg atgaagatac caaaagcgta cacagaatta
     2341 cagtgcctgg cgtgcagcag acatctgttg tcttagacac caccatcctg aaggagtcag
     2401 aagccaaaaa acccagccca gatgtgccca aaatgttggc taaggctggc cccatgccag
     2461 tgggtaagag cctaagttct agcaaaatag tccaggggcc tcaagggaca aagatggatg
     2521 acaaacacgt atttgtatcc aacaaggtca gtaacatagt caaagagcag ctcggtggcc
     2581 ttcaaccacg acctaccaag atctcgaaag ccagccagtg caagagtgct aaagatggag
     2641 atgggaatac accaagcaca caaagaaccc agttagctgg aagagccccg gaaggaatat
     2701 caggtccccc ggacattcag gcatctgact ttagttgtca ggtgaccagg gaggagaaat
     2761 ccgaatcaga aaaccgtcag cccatccaag cttcagagcc cccaaaagtc atgctccctg
     2821 tctcagataa actcactcac acacctttac ccattcatga tcagatgcct tccagcgctc
     2881 tcaccaatgc agttcaggtg cagccacagg agcctgagat gcctgctcac tccttaggca
     2941 agggtctgaa caaggacagc cctcaatctg ccaagaggtc gtggaaaata gaaggggttg
     3001 cagggcctga gacgttacaa cccagtggga agattcaccg tgcgcaggat agcccgaccc
     3061 cggggaatca tgggaaaaga ccgatcccac cgtcaccgcc cgtgaaggcc ctgtctcctc
     3121 ctgagcatca cttcaggaag caggtcaaac actttttcca gtggctttct cctgacagaa
     3181 aatgcaaagg acaggaagca ctcctgaaaa ggggcacttc cccaccgtca ccagcacacg
     3241 acccggaaca aaaggggaga gctacctttc ctgggaacac tgtagctcag aaagccctga
     3301 gagactttgg gaaggtcccc aaggagcaac cggggcacag gcatggtgcg gcagatacca
     3361 tgcgcccccg cgtgcccgta tctccgccca ccaagcctgt aaaaactaag ccgaagagag
     3421 agtattgcgt cccaacagac ccagtccagg gacgccagct ccacccccca gcaccggtct
     3481 ctaaagtgcc aagtcccagg ttccacaatc aggccgctgc ttttgttgat caaaagagat
     3541 gcgtggcaga aagggccaga cagccccaga aatgtgaggc tttacagcct cgcccatccg
     3601 cgtcccacag agagtcagaa ctgcgccaaa atctcctgtg gagtcgagct gggaaagttc
     3661 ctcaggggac accccccttt gctgtaggga ctatgttggc cgacatgtcc cggttatgtg
     3721 aacagaaaat tctggctcag aatttcagag gaaaagcttt tgtcccccag aaataatcca
     3781 cctcttaaca gtactcagca ccctcaataa atgttttcat aaagtaa
//
