LOCUS       NM_001083890            3388 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus spermatogenesis associated 31 subfamily D, member 1C
            (Spata31d1c), mRNA.
ACCESSION   NM_001083890 XR_001557 XR_004506
VERSION     NM_001083890.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3388)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC154713.2.
            
            On Mar 8, 2022 this sequence version replaced NM_001083890.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK133350.1, BB616799.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-208               AC154713.2         174852-175059       c
            209-251             AC154713.2         174153-174195       c
            252-312             AC154713.2         173498-173558       c
            313-3388            AC154713.2         170115-173190       c
FEATURES             Location/Qualifiers
     source          1..3388
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="13"
                     /map="13 34.21 cM"
     gene            1..3388
                     /gene="Spata31d1c"
                     /gene_synonym="4932441B19Rik; Fam75d1c"
                     /note="spermatogenesis associated 31 subfamily D, member
                     1C"
                     /db_xref="GeneID:238683"
                     /db_xref="MGI:MGI:3588241"
     exon            1..208
                     /gene="Spata31d1c"
                     /gene_synonym="4932441B19Rik; Fam75d1c"
                     /inference="alignment:Splign:2.1.0"
     CDS             32..2593
                     /gene="Spata31d1c"
                     /gene_synonym="4932441B19Rik; Fam75d1c"
                     /note="family with sequence similarity 75, member D1C"
                     /codon_start=1
                     /product="uncharacterized protein LOC238683"
                     /protein_id="NP_001077359.2"
                     /db_xref="CCDS:CCDS49293.1"
                     /db_xref="GeneID:238683"
                     /db_xref="MGI:MGI:3588241"
                     /translation="MENILSFLNRSWLGFGSAFLDIGSNYIFLSGVWSILLYLWYLIL
                     KQFFPPPWKSQDIKKYQGSANKERRKSLKGCRITQRKSQEQRELLSVVQSPLGEEYDS
                     SNFRQLLCPDPYCGVCNGATAKISHLLSQATHQDGAVTMSSLDSTVSVTETALTLSLP
                     LPENTIDYPISDTACEPSLQSSSIISSHQSEYLEDTLSLSPLGGSLLSESTPPVNAKS
                     PLDHSLHSLASLPLPQQYVTPETELLLQPTTVLSLVDSPMELFANVPINNGICSSSHA
                     MSEFIQQQTDTGNSSQLESAHPVNQELLDPYSSESYLWGNTSTYLTLPGNLHFSSLGA
                     VALLETQDGRRTDSLKTWEKTSEFDHQNLAVSHSLESSKERLHTPQHLSYSKTSEDQL
                     EDKNTQSFWGLPSLHSESMNSIATVLTDSSLISGCFNRFSDSPMLTHRTTLPLSESQL
                     HNLSQSLSQSQSQPVSQANLQAQLQLPNPVLSPHSQLRICGVYFHSPQNEAQPLEPTA
                     IHCLEYNILKKEQERVWGLPTVVINSQQEFCPPPPNPSLVSQLSKTHVPKSISIEKCF
                     ITSELQKKFEHHLRKRLILQRWGLPKRIRESLLWINPQAELPESPSAKSNYGLSWIPF
                     FKQQSKKDLHKTILSQPGSFPAKQLEEKLLKLCSKQGLEMVQKQQTWSNTKGTLDNGL
                     QSDCETNLQCHSDSLSCKPLGTSEVSQCQKKLETSLKEHLTTRLNETIERQITSTMSG
                     SRYGPFPFTSCVNKEEHKAQMPSDIKDRHVKSISTAKKSVKQQTSFDLDNTSLEESKG
                     NRHSSDVPKMLAEVLGKRLTSGKTVQRPQATKIIDKKIFVSNKVGKGGQLSGLQP"
     exon            209..251
                     /gene="Spata31d1c"
                     /gene_synonym="4932441B19Rik; Fam75d1c"
                     /inference="alignment:Splign:2.1.0"
     exon            252..312
                     /gene="Spata31d1c"
                     /gene_synonym="4932441B19Rik; Fam75d1c"
                     /inference="alignment:Splign:2.1.0"
     exon            313..3388
                     /gene="Spata31d1c"
                     /gene_synonym="4932441B19Rik; Fam75d1c"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3368..3373
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Spata31d1c"
                     /gene_synonym="4932441B19Rik; Fam75d1c"
                     /note="hexamer: AATAAA"
     polyA_site      3388
                     /gene="Spata31d1c"
                     /gene_synonym="4932441B19Rik; Fam75d1c"
                     /note="major polyA site"
ORIGIN      
        1 atatacctca ggcatccatg agactcagtg tatggagaac atcctctctt ttctaaatag
       61 atcatggtta ggctttggat cagcattctt ggatattggc tccaattaca tctttctgag
      121 tggagtttgg tctattcttc tatacctgtg gtatttgata ctgaaacaat tcttcccacc
      181 accttggaaa agtcaggaca tcaaaaagta ccagggctca gctaacaaag aaaggaggaa
      241 gtcacttaaa ggttgtagaa ttacccagag aaagtcacag gaacagagag agctgctgtc
      301 tgttgtgcaa agccccctag gtgaagagta tgattcttcc aattttcggc aactactgtg
      361 tccagatccc tactgtggtg tgtgtaatgg agcaactgct aagatcagtc atctgctttc
      421 tcaggccact caccaagatg gcgctgtcac tatgtccagt ctggactcca cagtttctgt
      481 gacggagaca gcgctgactt tgtcccttcc tctcccagaa aatactatag actatcctat
      541 ttcagacact gcatgtgagc cttctctaca gtcttcctcc atcatttcat ctcaccaaag
      601 tgagtaccta gaagacacac tttctctctc accactgggt ggctctctac tatcagagtc
      661 tactcctcct gtgaatgcta aatccccact ggaccattct ctccattcac ttgcctcttt
      721 acctcttcca caacaatatg tcactccgga aacagaactg cttctccaac caacaactgt
      781 tctctctctg gtggacagcc ctatggagct tttcgctaat gttccaataa acaatggcat
      841 ttgcagttca agtcatgcaa tgtcagaatt tatccagcag cagactgata caggcaactc
      901 ttcccagttg gagtcagcac atccagttaa ccaagagctt cttgacccct attcttctga
      961 atcctactta tggggaaaca cctcaaccta cctcacattg cctggaaacc ttcacttttc
     1021 cagccttggt gccgtggcac tacttgagac acaagatgga aggaggactg attcacttaa
     1081 aacttgggag aaaacctcag agtttgatca tcagaacttg gcagtttccc attctttgga
     1141 gagcagtaaa gagagacttc acacacccca gcatttgtct tattccaaga cctctgaaga
     1201 tcagttagag gataaaaata cccagtcctt ctggggactc ccttctctac acagtgagtc
     1261 catgaactct attgctactg tgttgactga cagttccctg atctctgggt gcttcaacag
     1321 attctcagat tccccaatgc ttacccaccg cacaactctg cccttgtctg aaagtcaact
     1381 acataacttg tcccaaagtc tgtcccaatc tcagtcccaa cctgtctctc aagccaacct
     1441 ccaggcccag cttcaactcc caaatccagt gctatcacct cattcccaac ttaggatctg
     1501 tggggtgtat tttcacagcc cccagaatga ggcacaacct cttgagccaa ctgcaatcca
     1561 ctgcctggaa tacaacatat tgaaaaagga acaggaaaga gtatggggtt tacccactgt
     1621 ggtcataaat tcccaacaag aattttgtcc cccacctcct aatccctcat tggtcagtca
     1681 gctctccaag acccatgttc caaagtccat ctctattgaa aaatgcttta tcaccagtga
     1741 gctccagaag aaatttgagc accaccttcg aaagaggctc atcctacaac gctggggcct
     1801 gcccaagagg atccgtgagt ctctgctatg gataaatcct caggcagaac ttccagagtc
     1861 accctcagcc aaaagcaact atgggctttc atggatcccc ttctttaagc aacagagcaa
     1921 gaaagaccta cacaaaacta ttttgagcca acctggaagc ttcccagcaa agcaattaga
     1981 ggagaaactg ttgaaactgt gttctaagca aggcctagaa atggttcaaa aacagcagac
     2041 atggagtaac actaagggca ctctagataa cggcctgcaa tctgactgtg agacaaacct
     2101 acaatgccac tcagatagtc tttcatgcaa acctttaggg acctcagagg tgagccaatg
     2161 tcagaaaaaa cttgaaactt ctctgaaaga acatttgacc acacgtctca atgaaaccat
     2221 tgagcgtcag atcactagca ctatgtccgg atcaagatat ggtcctttcc cttttacctc
     2281 ttgtgtgaac aaggaagaac acaaggccca gatgccttct gatatcaagg ataggcatgt
     2341 aaagagcata tctacagcga aaaagtctgt caagcaacag acatcctttg acttagacaa
     2401 caccagcctg gaagagtcaa agggcaatag acacagctca gatgtgccca aaatgttggc
     2461 tgaggtcttg ggtaagagac taacttctgg caaaacagtc cagcgccctc aagcaacaaa
     2521 gataattgac aaaaaaatat ttgtatccaa taaggtcggt aagggagggc agctcagtgg
     2581 ccttcaaccg tgatctacca agatcttgaa taccagctag tgtaagagtg ctcaaggagc
     2641 agatgggaaa acaagaaaag cacaaaatac actgttagct ggaagggcct gaagggaaga
     2701 tcaggtcccc aggagtgtca gacatctgac tttaacagtc agttgtccag ggaagagaaa
     2761 tttaaatcag aaagcagtca gcccatacaa gctctagggc cccaaaatga catgctccct
     2821 gtctcatata aattcacttg caaaccgtta ttcattcatg accttccaat tgacccatga
     2881 ataattctga tgtgcatcag gtttacttgt ccacagcaga gtttaatgta gaacagcaac
     2941 aggagccctg gatgcctcca tatatcttag acaattgcca gaacaaagaa cttccctcca
     3001 tctgcccaga aagcataccc tctagcctgc aaaacagaag agcttggtgc aagtgatgaa
     3061 aaaaatggat aggagacagt ggcagacaga tccatacagt tccagaaatg tgtggcttta
     3121 cagaagaagc tactgtgtca gaggcagtgc ccatccatgc cccacagtag ccagaaattc
     3181 accaaaatct catctgtagg tgtcattttg accaggtacc ttcagttgct accctgagtt
     3241 gtacactctg tgtcagaaag tccatctcaa ttttacaaca gaaaatgctt ttcctgaatt
     3301 tctcccagaa aaaaaatcac tcccatcctc agtattccat cctttattga caatactgat
     3361 tgtccccaat aaaggttcag ataaagtg
//
