LOCUS       NM_028157               4281 bp    mRNA    linear   ROD 04-AUG-2023
DEFINITION  Mus musculus spermatogenesis associated 31 subfamily D, member 1A
            (Spata31d1a), mRNA.
ACCESSION   NM_028157 XM_001001593
VERSION     NM_028157.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4281)
  AUTHORS   Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, Magen
            A, Canidio E, Pagani M, Peluso I, Lin-Marq N, Koch M, Bilio M,
            Cantiello I, Verde R, De Masi C, Bianchi SA, Cicchini J, Perroud E,
            Mehmeti S, Dagand E, Schrinner S, Nurnberger A, Schmidt K, Metz K,
            Zwingmann C, Brieske N, Springer C, Hernandez AM, Herzog S, Grabbe
            F, Sieverding C, Fischer B, Schrader K, Brockmeyer M, Dettmer S,
            Helbig C, Alunni V, Battaini MA, Mura C, Henrichsen CN,
            Garcia-Lopez R, Echevarria D, Puelles E, Garcia-Calero E, Kruse S,
            Uhr M, Kauck C, Feng G, Milyaev N, Ong CK, Kumar L, Lam M, Semple
            CA, Gyenesei A, Mundlos S, Radelof U, Lehrach H, Sarmientos P,
            Reymond A, Davidson DR, Dolle P, Antonarakis SE, Yaspo ML, Martinez
            S, Baldock RA, Eichele G and Ballabio A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK005940.1, AK029673.1 and CR520895.1.
            
            On Apr 5, 2007 this sequence version replaced NM_028157.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK029673.1, BB615260.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-16                AK005940.1         2-17
            17-473              AK029673.1         2-458
            474-4090            AK029673.1         460-4076
            4091-4281           CR520895.1         1-191               c
FEATURES             Location/Qualifiers
     source          1..4281
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="13"
                     /map="13 31.87 cM"
     gene            1..4281
                     /gene="Spata31d1a"
                     /gene_synonym="1700013B16Rik; Fam75d1a; Fam75d3"
                     /note="spermatogenesis associated 31 subfamily D, member
                     1A"
                     /db_xref="GeneID:72219"
                     /db_xref="MGI:MGI:1919469"
     exon            1..233
                     /gene="Spata31d1a"
                     /gene_synonym="1700013B16Rik; Fam75d1a; Fam75d3"
                     /inference="alignment:Splign:2.1.0"
     CDS             48..4058
                     /gene="Spata31d1a"
                     /gene_synonym="1700013B16Rik; Fam75d1a; Fam75d3"
                     /note="family with sequence similarity 75, member D3;
                     family with sequence similarity 75, member D1A"
                     /codon_start=1
                     /product="spermatogenesis-associated protein 31D1"
                     /protein_id="NP_082433.2"
                     /db_xref="CCDS:CCDS49284.1"
                     /db_xref="GeneID:72219"
                     /db_xref="MGI:MGI:1919469"
                     /translation="MEKILSALNGLSETWLTLGSASYHIDLNYTLLSGLGLLLLYISY
                     LILKLLIHLLGRKKYTPKRQNSIRRKQRKAFKRRKVGPRDPEEGRRLQTVLQSPDKPY
                     DPTGFRQALCPDPRCRVCNKASTQVRHLLSQAPLEDGAASVSSLPSTAPLIEASLALP
                     PHFPANRPGHPAPETPPHTSRSIHLQNQITPLDGVSSPPISLSASLSPQAAASLNPAV
                     LPAHTPRRTLASFPHLHPNATQEAQLALQAEVPQPPVESPRERSPSVSTAKSTVYEPA
                     SSRPQFTAEDQSLTNSTHVINHQPPPSDSYASQGSYQGLTKAYAVEPGDHLSPSPDVL
                     ALFTKQEEGDADGTVYKLKREKAVSYIMPSNTSGEISASTAGLENLEVSHLLGNEKGK
                     PEDPHLLQQPSHLKNSEDQSEIKDIQLFWGLPSLHSESLKHEAANTGNSYPGRDYFNK
                     VAQASTGSHSSNLTYSTPLPLPESDQQGQIVPQSQIMPDSLANSKAQPQSLAQLLSPS
                     PQSQLGICGVRFHSLKNEAQPLTPCEIQQLEYNLLQKALQSFLGLPTLTETFQESFCP
                     PPPKISSTRNSSKVHAPKTILPGDFPLSHTLKRKLEHHLRKRLIQRHWGLPHRILESL
                     SFLSPHSEIPEAPKPRDTHGLSRVSLYKFNANTNLPSSGVSQSERSCKKPLESHPPQE
                     KDINVQRHRPGINQRDPIQCKSCGATKSTVHSNSETDPELQLGNMSGNISKASWVRQC
                     QKECEAYLQKHLGKDTKEISGSERPSAVDSSRHSRNMTQPPPETCPRQMEPLACEEDA
                     LTRHPHSLAIGPSKEKTLEEHITAFRRRMAFGLPKRVEESLESDLTKAEPSQPFPQLH
                     IQAHNVSRADPAKSSRSLRRNTTGDRMGTMTSVPTQQSPLPAASLVGHSQPASENKKV
                     GVDRDLSIAPRDREPTQHWTPRRADKGDVQQSGSHNRPGPELPMSPGGPTHERLASST
                     NTQGSQEERRSREDGSEAEGSTELHKGEQLPGLHPQSTKSLKGTQGLCSPGSPVTACQ
                     SPQGMSFLHNSESPDSKSQVSTEVQLNSEGGTHNQVPDLPATPFAPQEMTSKPQGPSG
                     GDMAVSQVLRVHMPTVGISMESRQGPWVPAYVSGKSKNKDCLPAARGLPQLATEAGKF
                     GGGDAGLGTSQTTGKGHCVQARAPEETQGLTASPALTPKSQPQENQFTSQVKGFWQRL
                     SPGKKHKGQEKSLAKGCSPLASGKGTSPIKGRSEFCGNPEAQNCVREPGMVLRKQLGH
                     RHGTVTPCPQVPVSPLMGSEGAQQEVPLQAQAEPVQRLPHLCCRGSCSPVPRAESCSP
                     GQGQTAPERCGPTGKS"
     exon            234..276
                     /gene="Spata31d1a"
                     /gene_synonym="1700013B16Rik; Fam75d1a; Fam75d3"
                     /inference="alignment:Splign:2.1.0"
     exon            277..337
                     /gene="Spata31d1a"
                     /gene_synonym="1700013B16Rik; Fam75d1a; Fam75d3"
                     /inference="alignment:Splign:2.1.0"
     exon            338..4277
                     /gene="Spata31d1a"
                     /gene_synonym="1700013B16Rik; Fam75d1a; Fam75d3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aggaaccctc agcctcagac acctcaggca gccatgctgt tgctgccatg gagaagattc
       61 tctcagctct gaatggcctc agtgagacat ggctgaccct aggctcagct tcctaccaca
      121 tagacctcaa ctacactctt ctgagtggac tggggctact gcttctgtac atctcctacc
      181 tgatattgaa actgcttata catttgctgg ggagaaagaa atacacccca aagcggcaga
      241 acagcatcag gcgcaaacaa aggaaagcat ttaaacggag gaaagttggc ccgagagacc
      301 ctgaggaagg aaggaggctg cagacagtcc tacaaagccc agacaagcca tatgatccca
      361 cgggctttcg gcaagcgcta tgcccagatc cccgttgtcg cgtatgtaac aaagcaagca
      421 ctcaggtcag acacctgctc tctcaggctc ccctggaaga tggtgctgcc tcggtgtcct
      481 ctttgccatc taccgctccc ctgatagagg cttcgcttgc tctgccccct cactttcctg
      541 ccaaccgacc aggacaccca gctccagaaa ctcctcccca cacttctcgc tccatccact
      601 tgcagaacca aatcactcct ttggatggtg tatcttctcc ccccatatcg ctcagcgcct
      661 ctctgtcacc acaagctgct gcctccttaa accctgcagt gttaccggcc cacaccccac
      721 gcagaacact tgcctctttt ccacacctac atccaaacgc cactcaggaa gcacagttag
      781 ctctccaagc agaagttccc cagcctcccg tggaaagccc tagggagcgg tcccccagtg
      841 tctcaactgc caaaagcact gtctatgagc cagcatcctc ccggccacag ttcactgctg
      901 aagaccagtc cctgacaaat tcgacacatg ttattaacca tcagcctcct ccatcagact
      961 cctatgcttc tcagggctca taccagggac tcacaaaggc ctatgctgtg gagcctgggg
     1021 atcatttgtc tcccagcccc gatgtcttag cactcttcac gaagcaagag gaaggggatg
     1081 ctgatggcac tgtgtataaa cttaaaaggg agaaagcagt atcttatata atgccatcaa
     1141 atacttcagg ggaaatctca gcatcaactg ctggtctaga gaacttggaa gtctcccacc
     1201 tcttaggtaa tgaaaaggga aagccagagg accctcacct actccaacag ccctctcatc
     1261 tgaagaactc tgaggaccag tcagagataa aggacatcca gctcttctgg ggtctccctt
     1321 ctctccacag tgagtccctg aaacatgagg ctgccaacac aggtaacagt tacccaggaa
     1381 gggactattt caacaaagtg gctcaggcct ccacaggcag tcattcttcc aatcttactt
     1441 actccacacc tctgcccttg cctgagagtg accaacaagg gcagattgta cctcagtctc
     1501 agatcatgcc tgactccctt gccaactcta aggcccagcc tcaatcccta gcccaactcc
     1561 tgtcaccttc tcctcagtcc cagcttggga tatgtggggt gcgttttcat agcctgaaga
     1621 atgaggcaca gcctctcacc ccatgtgaaa ttcaacagct ggaatacaac ctattgcaaa
     1681 aagcgctgca aagtttcttg ggtttaccca ctctaactga aacattccaa gaaagcttct
     1741 gtcccccacc tcctaaaatc tcctcaacca gaaattcatc caaggtccat gctcccaaga
     1801 caatccttcc tggagacttc cctctcagcc atacactcaa gaggaaactc gaacaccatc
     1861 ttcgaaagag actcatccag cgacactggg gcttgcccca caggatcctt gaatctctgt
     1921 cattcttgag tcctcattca gaaattcctg aggcccccaa gccaagggac acccatggac
     1981 tctcacgggt ctctctctat aagtttaatg ccaacacaaa cctaccaagc tctggggtaa
     2041 gccaatcgga aagatcctgt aagaagccct tagagagtca ccctccacag gaaaaagaca
     2101 tcaacgttca gagacaccgt ccagggataa accaaagaga tcccatacaa tgtaagtcct
     2161 gtggagctac aaagagcact gtacattcta attctgagac agacccagaa cttcagctag
     2221 ggaatatgtc tggaaacatt tcaaaggctt catgggtcag acagtgccag aaagaatgtg
     2281 aagcttacct gcaaaaacat ctgggcaagg acactaaaga aattagtggg agtgagaggc
     2341 ctagtgctgt ggacagctca aggcattctc ggaacatgac acagcctcca cctgagacct
     2401 gccccagaca gatggaacca ttggcatgtg aggaggatgc actgacgagg cacccccaca
     2461 gcttagcgat tggtcctagc aaagagaaga cgctggaaga acacatcaca gccttccgca
     2521 gaaggatggc atttggcctc ccaaaaaggg ttgaggagtc cttagaatca gaccttacaa
     2581 aagcagagcc ttctcagcct ttccctcagc tccacattca agcccacaac gtttctagag
     2641 cagaccctgc caagtcctcc aggtcccttc ggagaaacac tactggagat agaatgggga
     2701 caatgacttc agtccccacc caacagagcc ctctccctgc tgcctcactg gtgggccaca
     2761 gccagccagc ctctgagaac aagaaggtgg gtgtagatag agaccttagc atagccccaa
     2821 gggacagaga gccaacccag cactggacac ccaggagggc agacaaaggt gacgtgcagc
     2881 agtctggatc acacaacaga cctggcccag agctgcccat gagcccaggt gggccaacac
     2941 atgagagatt ggcttccagc accaacacac aagggtctca ggaagaaagg aggagccggg
     3001 aagacggctc cgaggccgag ggctccacag agctacacaa gggagagcaa ctcccgggtc
     3061 ttcacccaca gtccactaag agcttgaaag gcacccaagg cctgtgctcc ccagggagcc
     3121 ctgtgactgc atgtcagtcc ccacagggaa tgtcatttct ccacaactct gagagccctg
     3181 actctaaaag tcaggtgtcc acagaagttc agctgaactc agagggcggg acacacaacc
     3241 aagtgccaga cctgcctgcc acgccctttg ccccacaaga aatgacttcc aaaccccagg
     3301 gcccctccgg tggggacatg gcagtttctc aggtactgcg tgtgcacatg cccactgtgg
     3361 gcatcagcat ggagtcgagg cagggtccct gggtccctgc atatgtctca ggcaagagca
     3421 agaacaagga ctgtctccct gctgccaggg gattgccaca gctggcaact gaggcaggaa
     3481 agtttggggg aggggatgca ggcttaggga catcccagac cacagggaag ggacactgtg
     3541 ttcaggccag ggcaccagag gagacacaag gactcacagc ctccccagca ctgacaccta
     3601 agagtcagcc tcaggaaaat cagttcacca gccaggtgaa gggcttctgg cagaggctgt
     3661 cccctgggaa gaaacacaaa ggacaggaaa agtccctggc caagggctgc tctccattag
     3721 catctgggaa gggcacaagc cccatcaaag ggagaagtga gttttgtggg aaccctgaag
     3781 ctcagaactg tgtgagggag cctgggatgg tcctgaggaa gcagctgggg cacaggcatg
     3841 ggacagtcac cccctgcccc caggtccctg tgtctcccct catggggtct gaaggagctc
     3901 agcaggaggt gcccctgcag gctcaggcag agcctgtcca gaggctgccc cacttgtgct
     3961 gcagaggttc ctgctctcca gtgccaaggg ctgagtcctg cagcccagga cagggacaga
     4021 cagcccctga gaggtgtggc cctacaggaa aaagctaaga gggtggagac ctcccctgtg
     4081 ctttcttccc caccaaagtc ctctctgtag acatgaagct agctaggagt ttccggctgc
     4141 ccttctttgt gtggaaggca ctgttgggag gtttgtttcc attaacaaaa gaaaaaaaga
     4201 aaaaaagatt ttctctggca tatgttttta cttacaatag tctcttattc ctttgctaat
     4261 aaattttctg taaatttaaa a
//
