LOCUS       NM_030176               2449 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus spermatogenesis associated 2-like (Spata2l),
            transcript variant 1, mRNA.
ACCESSION   NM_030176
VERSION     NM_030176.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2449)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC163617.5, AK081234.1 and AW123302.1.
            
            On Oct 25, 2017 this sequence version replaced NM_030176.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK081234.1, SRR7345562.4490478.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-49                AC163617.5         15542-15590
            50-2429             AK081234.1         1-2380
            2430-2449           AW123302.1         1-20                c
FEATURES             Location/Qualifiers
     source          1..2449
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 72.09 cM"
     gene            1..2449
                     /gene="Spata2l"
                     /gene_synonym="2610039E05Rik"
                     /note="spermatogenesis associated 2-like"
                     /db_xref="GeneID:78779"
                     /db_xref="MGI:MGI:1926029"
     exon            1..109
                     /gene="Spata2l"
                     /gene_synonym="2610039E05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            110..441
                     /gene="Spata2l"
                     /gene_synonym="2610039E05Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             139..1419
                     /gene="Spata2l"
                     /gene_synonym="2610039E05Rik"
                     /note="isoform 1 is encoded by transcript variant 1;
                     spermatogenesis-associated protein 2-like protein;
                     SPATA2-like protein"
                     /codon_start=1
                     /product="spermatogenesis-associated protein 2-like
                     protein isoform 1"
                     /protein_id="NP_084452.2"
                     /db_xref="CCDS:CCDS22752.1"
                     /db_xref="GeneID:78779"
                     /db_xref="MGI:MGI:1926029"
                     /translation="MGSSSLSEDYRQCLERELRRGRAGVCGDPSLRAVLWQILVEDFD
                     LHGALQDDALALFTDGLWGRADLAPALQDLARAFELLELAAVHLYLLPWRKEFTTIKT
                     FSGGYVHVLKGVLSEELLTRSFQKMGYVRRDNHRLMVTTPPPACQLVQVALGCFALRL
                     ECEILSEVLTQLGTSVLPAEELLRARRASGDVASCVAWLQQRLAQDEEPPPLPPRGTP
                     ATYGAPVDLYQDLQEDESSEASLYGEPSPGLDSPPVELAYRPPLWEQSAKLWGSGGQP
                     WEPPADDMHRASSPPYGALEEELEPEPSAFSFLSLRRELSRSGDLAPPESPSSPGQAS
                     PRHRQAEAAASSAYGPAVEPLSYQAHSCLSPGNLPTLCCDTCRQLHATHCTALSACRP
                     THSLRILLGDNQRRLWLQRAQVDNLLYDSPGAHP"
     exon            442..2432
                     /gene="Spata2l"
                     /gene_synonym="2610039E05Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2411..2416
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Spata2l"
                     /gene_synonym="2610039E05Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      2432
                     /gene="Spata2l"
                     /gene_synonym="2610039E05Rik"
                     /note="major polyA site"
ORIGIN      
        1 gcccaccaac gtcacgacca aggccaaggg gcgggcttga ctttctgcgg aagagcgagg
       61 agagacccag gcccaagcgg agctctctgg aatagctggc gactagcagt ttgacacctc
      121 atcccggacc tgatcaggat gggcagcagc tcactgtccg aggactatcg ccagtgcctg
      181 gagcgcgagc tgcggcgcgg ccgcgcgggc gtttgcggcg acccctcgct gcgcgcggtg
      241 ctctggcaga ttctggtgga agactttgac ctgcacgggg cgctacagga cgatgcgcta
      301 gccctgttca ctgatggcct gtgggggcgg gctgacctgg caccggccct ccaagatctg
      361 gcccgcgcct ttgagctcct agagctggcc gctgtgcacc tgtacctgct gccctggaga
      421 aaggagttca ccactatcaa gaccttctca gggggctatg tgcatgtgct gaagggtgta
      481 ctctctgagg agctcctgac tcgaagcttc cagaagatgg gctacgtgcg cagggacaac
      541 caccgcctaa tggtgaccac cccaccccct gcctgccagc tggtgcaggt ggccctaggt
      601 tgctttgctc ttcggttgga gtgtgagatc ctaagtgagg tcctgactca gctgggtaca
      661 agcgtactac cagccgagga gctgctccga gctcgacggg ctagtgggga tgtagcctcc
      721 tgtgtggcct ggctgcagca acgcctggcc caagatgagg agccaccacc tctgccccct
      781 cggggcacac ctgccactta tggggcccca gtggacctgt atcaggacct gcaggaagat
      841 gagagctcag aggccagtct gtatggtgag ccttccccag ggctggactc gcctcctgtg
      901 gagctggctt acaggccacc actctgggag cagagtgcca aactatgggg ttctggaggt
      961 cagccctggg aaccgccagc tgatgatatg catcgggcca gcagcccacc atatggggct
     1021 ctggaagagg agctggagcc agaaccctct gctttctcct tcctttctct gcgccgtgag
     1081 ctgagtcgct caggagactt agctccccct gagtcccctt caagccccgg gcaagccagc
     1141 ccccgacaca ggcaggcaga agcagctgca tcctcggcct atgggcctgc tgttgagcct
     1201 ctgagctacc aggcacacag ctgcttgagc cctggcaacc tacccaccct ctgctgtgac
     1261 acctgccgcc agctccatgc tacccactgc actgccctat ctgcctgccg cccgactcat
     1321 tcactgcgca ttcttcttgg tgacaaccag agacgcctgt ggctgcaacg agcacaggtg
     1381 gataacctgc tctatgacag tcctggggcc catccctagg cccagatgga ccccaacaat
     1441 tttggggaca gtttccatgg tgcttctttt ggaaaaggac ctaggccact ggctaccctg
     1501 gccctcctac tccccagggg ccattcagga cctgcagttg aaagagggta gagccttcgt
     1561 ggaacgctct cacctggtgc agtctcagcc ctggtgcagc aggccgagct caatcaaaaa
     1621 gatccttccc tctcatccct agcctcatgc ccagatgtgc tgggtagaga agtccaggtt
     1681 atcctgttac agtacccaaa ctcagaaaga ccccacccta tgaactgcct gaagctccct
     1741 acctgatccc tgtggagtat gactgaggac atgtccctct ttccacgtgc tgagaaaccc
     1801 tcacccaggg gcttgcaggt gacacagtta agatccccga gttagatttg ggccacgtgg
     1861 gagggtctga aagagcagag cttacttagc tgtgaggacc ccggttcacc tctgctgtta
     1921 gtgaggcaca ctcccaggca gtgggaggag ctgtcactcc cacccagcag gagtgattct
     1981 ctgccatcag ctacctacca gccagaaagg aagggagcat gtacaagcca cttctcaggc
     2041 tattgccaaa aagcagctca ccgccccact ccacgtagct cattctgggc atgcagctaa
     2101 ccaggaagaa gttataccct catctcccat gcgggtagac caggacccct cattagggtc
     2161 cctaaactgc caatcctcag gatagggata gtgaagggct ggattttcat caaccactcg
     2221 aaggcccagg cacagagatc accactttgc cacacttcct ctagtggcac ctcctcagcc
     2281 aagcctgtcc ctgctcctca tgcaggccct cagaggacac gggtccacct cagccaagcc
     2341 tgttcctgct cctcatgcag ggccctcgga ggacactgtc catgttgcat ggatcgaaac
     2401 cccacagtac attaaaggat tgccaaactg tcaaaaaaaa aaaaaaaaa
//
