LOCUS       NM_001316756            1944 bp    mRNA    linear   ROD 08-JUN-2024
DEFINITION  Mus musculus spermatogenesis associated 1 (Spata1), transcript
            variant 2, mRNA.
ACCESSION   NM_001316756 XM_006502089
VERSION     NM_001316756.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1944)
  AUTHORS   Zhang,L., Zhen,J., Huang,Q., Liu,H., Li,W., Zhang,S., Min,J.,
            Li,Y., Shi,L., Woods,J., Chen,X., Shi,Y., Liu,Y., Hess,R.A.,
            Song,S. and Zhang,Z.
  TITLE     Mouse spermatogenesis-associated protein 1 (SPATA1), an IFT20
            binding partner, is an acrosomal protein
  JOURNAL   Dev Dyn 249 (4), 543-555 (2020)
   PUBMED   31816150
  REMARK    GeneRIF: Mouse spermatogenesis-associated protein 1 (SPATA1), an
            IFT20 binding partner, is an acrosomal protein.
REFERENCE   2  (bases 1 to 1944)
  AUTHORS   Moon,A.M., Stauffer,A.M., Schwindinger,W.F., Sheridan,K.,
            Firment,A. and Robishaw,J.D.
  TITLE     Disruption of G-protein gamma5 subtype causes embryonic lethality
            in mice
  JOURNAL   PLoS One 9 (3), e90970 (2014)
   PUBMED   24599258
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1944)
  AUTHORS   L'Hote,D., Serres,C., Laissue,P., Oulmouden,A., Rogel-Gaillard,C.,
            Montagutelli,X. and Vaiman,D.
  TITLE     Centimorgan-range one-step mapping of fertility traits using
            interspecific recombinant congenic mice
  JOURNAL   Genetics 176 (3), 1907-1921 (2007)
   PUBMED   17483418
REFERENCE   4  (bases 1 to 1944)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC141632.4 and AC124987.9.
            
            On May 14, 2019 this sequence version replaced NM_001316756.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC139279.1, SRR5189685.142907.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-139               AC141632.4         132066-132204
            140-311             AC141632.4         138016-138187
            312-418             AC141632.4         141942-142048
            419-536             AC141632.4         143095-143212
            537-590             AC141632.4         144294-144347
            591-810             AC141632.4         144440-144659
            811-904             AC141632.4         149999-150092
            905-986             AC141632.4         150650-150731
            987-1095            AC141632.4         155557-155665
            1096-1221           AC141632.4         156478-156603
            1222-1400           AC124987.9         163822-164000       c
            1401-1499           AC124987.9         162303-162401       c
            1500-1587           AC124987.9         160106-160193       c
            1588-1658           AC124987.9         157382-157452       c
            1659-1944           AC124987.9         151399-151684       c
FEATURES             Location/Qualifiers
     source          1..1944
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 71.3 cM"
     gene            1..1944
                     /gene="Spata1"
                     /gene_synonym="4921536I21Rik; SP-2"
                     /note="spermatogenesis associated 1"
                     /db_xref="GeneID:70951"
                     /db_xref="MGI:MGI:1918201"
     exon            1..139
                     /gene="Spata1"
                     /gene_synonym="4921536I21Rik; SP-2"
                     /inference="alignment:Splign:2.1.0"
     exon            140..311
                     /gene="Spata1"
                     /gene_synonym="4921536I21Rik; SP-2"
                     /inference="alignment:Splign:2.1.0"
     CDS             276..1610
                     /gene="Spata1"
                     /gene_synonym="4921536I21Rik; SP-2"
                     /note="isoform 1 is encoded by transcript variant 2;
                     spermatogenesis-associated protein 1"
                     /codon_start=1
                     /product="spermatogenesis-associated protein 1 isoform 1"
                     /protein_id="NP_001303685.1"
                     /db_xref="CCDS:CCDS38666.1"
                     /db_xref="GeneID:70951"
                     /db_xref="MGI:MGI:1918201"
                     /translation="MSLNPSRPSSSELVELHVFYVPEGSWNYKLNTISIEVINNFISA
                     GFIRVSPQLTLQALRERLGEFLGVDAVAEKFLFLKCIGNNLAVVKEKQESELKLKSFA
                     PPYALQPELYLLPVIDHLGNVYSASTVTLDEQESINDTTEINGTIYRPDSVSLSKDEP
                     GNPSLLENTWRDFTNQEEAEESQPTQNHFGNSKLLGSLEESNDYFGNLKSPFLWKNDD
                     EEEDEEKDNAALSRRQATLVCDKECTALPDLIDFPSFPSQRVSSRLTDTSLLKIEREK
                     IIEQMKQVKEERKYLENIREELIKKVDKLFEQNKSKRYHASDSWKKKYLDTKKVTASL
                     EEVLTKLREDLELYYKKLLMQLEAREIKMRPRNLANISDSKNYLIIQITEVQHAIDQL
                     KRKLDTDKMKLILEVKMRKQAVSDLQTLKADLTQKKMGAPFRPPMFSGSVPT"
     exon            312..418
                     /gene="Spata1"
                     /gene_synonym="4921536I21Rik; SP-2"
                     /inference="alignment:Splign:2.1.0"
     exon            419..536
                     /gene="Spata1"
                     /gene_synonym="4921536I21Rik; SP-2"
                     /inference="alignment:Splign:2.1.0"
     exon            537..590
                     /gene="Spata1"
                     /gene_synonym="4921536I21Rik; SP-2"
                     /inference="alignment:Splign:2.1.0"
     exon            591..810
                     /gene="Spata1"
                     /gene_synonym="4921536I21Rik; SP-2"
                     /inference="alignment:Splign:2.1.0"
     exon            811..904
                     /gene="Spata1"
                     /gene_synonym="4921536I21Rik; SP-2"
                     /inference="alignment:Splign:2.1.0"
     exon            905..986
                     /gene="Spata1"
                     /gene_synonym="4921536I21Rik; SP-2"
                     /inference="alignment:Splign:2.1.0"
     exon            987..1095
                     /gene="Spata1"
                     /gene_synonym="4921536I21Rik; SP-2"
                     /inference="alignment:Splign:2.1.0"
     exon            1096..1221
                     /gene="Spata1"
                     /gene_synonym="4921536I21Rik; SP-2"
                     /inference="alignment:Splign:2.1.0"
     exon            1222..1400
                     /gene="Spata1"
                     /gene_synonym="4921536I21Rik; SP-2"
                     /inference="alignment:Splign:2.1.0"
     exon            1401..1499
                     /gene="Spata1"
                     /gene_synonym="4921536I21Rik; SP-2"
                     /inference="alignment:Splign:2.1.0"
     exon            1500..1587
                     /gene="Spata1"
                     /gene_synonym="4921536I21Rik; SP-2"
                     /inference="alignment:Splign:2.1.0"
     exon            1588..1658
                     /gene="Spata1"
                     /gene_synonym="4921536I21Rik; SP-2"
                     /inference="alignment:Splign:2.1.0"
     exon            1659..1944
                     /gene="Spata1"
                     /gene_synonym="4921536I21Rik; SP-2"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1867..1872
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Spata1"
                     /gene_synonym="4921536I21Rik; SP-2"
                     /note="hexamer: AATAAA"
     polyA_site      1889
                     /gene="Spata1"
                     /gene_synonym="4921536I21Rik; SP-2"
     regulatory      1924..1929
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Spata1"
                     /gene_synonym="4921536I21Rik; SP-2"
                     /note="hexamer: AATAAA"
     polyA_site      1944
                     /gene="Spata1"
                     /gene_synonym="4921536I21Rik; SP-2"
                     /note="major polyA site"
ORIGIN      
        1 gggacggccg cgggctcccc ccgcgcgcgc gagagagaga gaaggggcgg agcggccggt
       61 gggcgcggtg gcgacggggg cggtgcggcc cgacgcccgg ccggcgcctt ccgcctctgg
      121 aggggctggg tagggcgaga gaccagaaat agctggaatg ctatcttaaa ccaaaaatct
      181 atttaaatac ttacttaatg ctgcttaaat gaagaaagat atattaacta tccaaaactc
      241 cacctgataa ctatcccatt gagacactgg acaacatgtc gctcaatcca agtcgaccat
      301 cttcatcaga gttggtggaa cttcatgttt tttatgtccc tgaaggatcg tggaactata
      361 aattaaatac tatttcaata gaagttatta acaactttat ttctgctgga tttataagag
      421 tatctcctca gcttacctta caagctctga gggagcgtct tggggagttt cttggtgtag
      481 atgctgttgc agaaaaattt ttgtttctga aatgcattgg aaataattta gctgtggtaa
      541 aggaaaagca agaatcagaa ctgaaactca aatcatttgc tcctccatat gctcttcaac
      601 cagaattata tttgcttcct gtaatagatc acttaggaaa tgtttattca gcatcaacag
      661 ttactttaga tgaacaggag agtattaatg atactacgga gattaatgga acaatctaca
      721 gaccagatag tgtatctttg tcaaaggatg aacctggaaa tccaagtttg ttggaaaata
      781 catggagaga ctttacaaat caggaagaag ctgaggaaag ccaacctaca caaaatcact
      841 ttggaaattc caagttgctg ggatcattgg aagaatcaaa cgattatttt gggaacctaa
      901 aaagtccatt tctttggaaa aatgatgatg aggaggagga tgaggagaag gataacgcag
      961 ctctcagcag aaggcaggcc acactggtgt gtgacaagga gtgcactgcc ctgccagatc
     1021 tgattgattt cccttcattt ccttctcagc gggtttcttc aagattaact gatacctctt
     1081 tattaaaaat tgagagagag aagattattg aacaaatgaa acaagtaaag gaagaacgaa
     1141 aatatctgga aaatattaga gaagaactaa taaaaaaagt tgataagcta tttgaacaaa
     1201 ataaatcgaa acgatatcat gcctctgaca gctggaagaa aaaatacctt gacaccaaga
     1261 aagtcacagc atcattggag gaagttttaa caaaacttcg agaagatttg gaactttact
     1321 ataaaaaact gctcatgcag cttgaagcca gggagatcaa gatgcgacca aggaatttgg
     1381 caaatatctc agattctaag aattatctta taatccagat tactgaagta cagcacgcaa
     1441 ttgaccaact taagagaaaa ttggatactg ataaaatgaa actcatatta gaagttaaga
     1501 tgagaaaaca agcagtttca gatttacaga cattaaaagc tgatctgaca cagaagaaaa
     1561 tgggtgcacc tttccgacct ccgatgtttt ctggaagtgt gccaacctag aagttcaaca
     1621 gatgaatatt gtgtgtgata aatcagccag atgaacaggg agcattggcg gctgcaatac
     1681 attctgacca gatctgactt tgctcatcgt aagacatcac aaaaagaaag tcacaggcat
     1741 ctgcgatccc agtgtaatta tagcaccttt tgtctatgcg ctttggtgac caagctacat
     1801 caaaggttac ctgtggaaaa actacatatt atttacataa catttccttg ccttattcta
     1861 ctcaaaaata aagaaatgct tataatgtat gcatatagaa cttaatacat gtagaagagc
     1921 tctaataaat atgttttgtt acta
//
