LOCUS       XM_036163035            4060 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus spartin (Spart), transcript variant X3,
            mRNA.
ACCESSION   XM_036163035
VERSION     XM_036163035.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000069.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4060
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="3"
     gene            1..4060
                     /gene="Spart"
                     /gene_synonym="mKIAA0610; Spg20; TAHCCP1"
                     /note="spartin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 10 mRNAs, 30 ESTs, 569
                     long SRA reads, 2 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     6 samples with support for all annotated introns"
                     /db_xref="GeneID:229285"
                     /db_xref="MGI:MGI:2139806"
     CDS             403..2418
                     /gene="Spart"
                     /gene_synonym="mKIAA0610; Spg20; TAHCCP1"
                     /codon_start=1
                     /product="spartin isoform X1"
                     /protein_id="XP_036018928.1"
                     /db_xref="GeneID:229285"
                     /db_xref="MGI:MGI:2139806"
                     /translation="MEREPENGEPAEIKIIKEAYEKAFMFVNKGLNTDELGQKEEAKN
                     YYKQGIGHLLRGISIAAAEPGHTGPAWEAARQMQQKMKETLQNVRTRLEILEKGLATS
                     LRNDLQDVPKLYPEFPPKDACKKSPEQESVSTAPQRAEVDGSASAACAGPSGAPSALP
                     VPSPSCPAEAPPAYSPQAAEGHYTVSYGTDSGEFSSVGEDFYRNRSQPPPLETLGLDA
                     DELILIPNGVQIFFVNPAGEVSAPSYPGYLRIVRFLDNSLDTVLNRPPGFLQVCDWLY
                     PLVPDRSPVLKCTVGAYMFPDTMLQAAGCFVGVVLSSELPEDDRELFEDLLRQMSDLR
                     LQANWNREEDEFQIPGRSSHPSEPPKEASGTDVRQSSSSGSSIDQGSKDARHKGKRGK
                     KTKDSSEEVNLSQIVPCEPSSEEKSKELPEWSEKVAHNILSGASWVSWGLVKGAEFTG
                     KAIQKGASKLRERIQPEEKPVEVSPAVTRGLYIAKQATGGAAKVSQLLVDGVCTVANC
                     VGKELAPHVKKHGSKLVPESLKRDKDGKSALDGAMVVAASSVQGFSTVWQGLECAAKC
                     IVNNVSAETVQTVRYKYGHNAGEATHNAVDSAINVGLTAYNIDNIGIKAMVKKTAKQT
                     GHTLLEDYQIVERPQRESQGGATSTEGRRDIGKQVEEEKPGAGKKDK"
ORIGIN      
        1 gatcctcctg ccccaggaac ccgcgcatcc ctggtgctgg ccctcccatc cttggtccct
       61 tcttatcccc ggcgctggtc cttcaatcct gcgcccccgc gcatccttgg tgtgcgttta
      121 cctatccctg atcctcgctt gtcccttggt tcggatcctc ccatccctga tctctggtga
      181 tccctagtgt gcgtccgcca ctgttccctc tccaaacccc actggctttc ttgctcctct
      241 acagcttgtc caacgttggc agctgaaagc gccaggagcc acaacactgg cagtgaatgg
      301 agcgggcatt gtggttcctg gaaaataaaa attaattttg tggcccccag tgtaatcttt
      361 ctggacatga ctgctgcaaa gctttcattt atttggtaaa agatggagag agaaccagaa
      421 aatggagaac ctgctgaaat taagatcatc aaggaagcat acgagaaggc ctttatgttt
      481 gttaataaag gactgaacac ggacgagtta gggcagaagg aagaagcaaa gaactattac
      541 aagcaaggaa taggacacct gcttaggggc atcagcatcg cggctgcaga gccggggcac
      601 acaggccctg cgtgggaggc tgccaggcag atgcaacaga aaatgaagga aacgcttcag
      661 aacgtccgca ccaggctaga gatcctggag aagggccttg ccacttctct acggaatgac
      721 cttcaggatg tgcccaagct atacccagag ttcccgccta aagacgcgtg caagaagtcc
      781 ccagagcagg agtccgttag tacagcgccc cagcgtgctg aagtcgatgg gagcgcctca
      841 gccgcgtgtg ccggcccaag tggtgcgcct tctgctctgc ccgtaccatc gcccagctgc
      901 cctgccgaag cgccaccagc ctacagccca caggctgctg agggccacta cactgtttcc
      961 tatggaacag attccgggga gttttcatcc gtgggagaag acttctacag gaaccgttcc
     1021 cagccgcccc ctcttgagac cttggggctc gatgcagatg agttgatctt gataccaaac
     1081 ggagtgcaga tcttttttgt aaaccctgcg ggagaggtca gtgctccctc gtaccctggg
     1141 tatctgcgga tcgtgcggtt cttggataat tctctggata cagttctgaa ccgccctcct
     1201 gggtttctcc aggtgtgtga ctggttatac cctctagttc ctgataggtc accagttctg
     1261 aagtgcactg tgggagccta catgtttcca gataccatgt tacaagctgc tgggtgcttc
     1321 gtaggggttg ttctttcatc tgagctccca gaagatgaca gagagctgtt tgaggatctg
     1381 ttgagacaga tgtctgacct tcggctccag gccaactgga atagagaaga agatgaattc
     1441 caaatccctg ggagatcaag tcacccctct gaaccaccga aggaagcttc tggcactgat
     1501 gtcaggcagt caagttcttc aggttcctca atagaccaag gcagcaagga tgcccgccat
     1561 aaaggaaagc gtgggaaaaa gaccaaagat tcaagtgaag aagttaatct gagccagatt
     1621 gtgccctgtg agccgagttc agaagaaaaa tcgaaagaat tgcctgaatg gagcgagaaa
     1681 gtggcccaca acatcctgtc aggtgcttcc tgggtgagct ggggtttagt caaaggtgct
     1741 gaatttactg gcaaagcaat tcagaaaggt gcttctaaac tcagagagcg cattcagccg
     1801 gaggaaaagc cagtggaggt gagcccagct gtcaccaggg gtctctacat agcgaagcag
     1861 gcaaccggag gagcagccaa agtcagccag ctcctggttg acggcgtctg cacagtagcg
     1921 aattgtgttg gtaaagaact tgctccacac gtcaagaagc acggaagcaa actggttccg
     1981 gaatccctga agagggacaa agacgggaaa tctgccctgg atggcgccat ggtcgtggca
     2041 gcgagtagtg ttcaaggatt ctcaactgtc tggcaagggt tggaatgtgc agctaaatgc
     2101 atcgttaaca acgtgtctgc agaaactgta cagactgtga gatacaagta tgggcacaac
     2161 gcaggagaag ctacacataa cgcagtggat tcagctatca atgttgggct cactgcctac
     2221 aatattgaca acatcggcat caaagccatg gtgaagaaaa ctgccaagca gacgggacac
     2281 actctcctcg aggactacca gatcgttgag cgccctcaga gggagagtca gggaggagcc
     2341 acaagcacag aagggagaag agacatagga aagcaggtgg aggaagagaa gccaggggca
     2401 ggaaagaagg acaaataatg agaatcctgg gagtcacctg caccaaagcc ttagcagacg
     2461 gagggtgtga gcggacggag attctccaca gaacagcgtc ttctgtctgt tcatttctac
     2521 agagtgactg ttggaagttt ggggcatgta tccacttaca aggaaaataa tcagtgttct
     2581 tacatctggc ttctaacata tgcagtttgt agtctcagta agtttatttt cccttaaatg
     2641 tggctaaact atttttgcag ttacaataaa gcttataata tatatgtggt ttaaacctaa
     2701 tgtcaaccta tttttgtatg tgctgccttc agaaagcaaa gtaggaagct gtgcacgtga
     2761 tttcacagcc acctgagttc tgggaatacc ggaaaggact taatgtcgac tgacgccttc
     2821 cttttgcact aattgtggct cttttgagat gcccaacagg attttcagca gataagctaa
     2881 acaaaactgt gatcttaaag tttgttctca gataatgctt tagaactctt tctccaacag
     2941 ggatgagctt ggtcatgaaa gtgccttgac gctctgcaat gttcctctta ttcgctagct
     3001 cttctgccta ctaggaaacc aaaatggcct tgcgatttaa acggaagaaa tgcttcttta
     3061 agtctttatg actgaggcta gggaattttt tgatagaatg aatttttatg aattctttga
     3121 gaattttgta catgcataaa tgtgttttga ttgtatcccc ccacactccc caactcctcc
     3181 caggtccaca cctccctctt ccaacctcat gttcttttgt gcgtttgttt taaatagtcc
     3241 agtgtgtgct gcccgtatgc tcatgggtgt gggaccatcc actgcaggtt ggttcatcct
     3301 ccagggacca tgctcctcaa gaaaactgac atcttgttcc ccagaagcca tcaactgtca
     3361 atagcccccc agctaggccg ggggcttgtg agaccctgcc cactgcaggc tggggtgttg
     3421 actggtttga tcctgtggaa gtggcctcag ctgccgtgtg tgtaagggtc ctgtcatgcc
     3481 cagaagatgt gagtttatcc acgcctcctg gacttctgac tcttggccat tccactcccc
     3541 atcctccatg ttccctgggc tttatggagg tagactaagg aatgttgaac tatgatttgt
     3601 attctattaa aatttgaatt gattgttact ggcactaaga aatcactttt ccatatctgc
     3661 ttctgtaagg ttttcctaaa tttctagaaa gtaaaacaca aacattgcac ttactaagtg
     3721 taatatatct ccactcagtc attacaattt atactgaaag ccagaagtga tgggaggagc
     3781 ctgtccatac cacagggaag aatatggaac ccttggtggg gagccccaac ttttgcagaa
     3841 tacaggacag acatttgccc attttctttt aagttacaaa tatgtaatta aatactccat
     3901 ggtattttat ttctattaat tttaaaaggt tgatattggt ttttatagtt ttggcctatt
     3961 gtaatcattt ctgaacctgt agttgactag cttatgaatt tcatttgaaa ctggttaatg
     4021 aatgtgcttt gagaataaaa tggtttttga attgctgggc
//
