LOCUS       NM_001039563             642 bp    mRNA    linear   ROD 04-APR-2024
DEFINITION  Mus musculus sperm associated antigen 11B (Spag11b), transcript
            variant 2, mRNA.
ACCESSION   NM_001039563
VERSION     NM_001039563.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 642)
  AUTHORS   Amid,C., Rehaume,L.M., Brown,K.L., Gilbert,J.G., Dougan,G.,
            Hancock,R.E. and Harrow,J.L.
  TITLE     Manual annotation and analysis of the defensin gene cluster in the
            C57BL/6J mouse reference genome
  JOURNAL   BMC Genomics 10, 606 (2009)
   PUBMED   20003482
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 642)
  AUTHORS   Patil,A.A., Cai,Y., Sang,Y., Blecha,F. and Zhang,G.
  TITLE     Cross-species analysis of the mammalian beta-defensin gene family:
            presence of syntenic gene clusters and preferential expression in
            the male reproductive tract
  JOURNAL   Physiol Genomics 23 (1), 5-17 (2005)
   PUBMED   16033865
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK136627.1 and DQ012055.1.
            
            On Nov 7, 2013 this sequence version replaced NM_001039563.2.
            
            Transcript Variant: This variant (2) uses an alternate in-frame
            splice site in the 5' coding region, compared to variant 1. It
            encodes isoform c, which is shorter than isoform 1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC145549.1, AY552530.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849376, SAMN00849381
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-39                AK136627.1         2-40
            40-381              DQ012055.1         1-342
            382-642             AK136627.1         1481-1741
FEATURES             Location/Qualifiers
     source          1..642
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 10.35 cM"
     gene            1..642
                     /gene="Spag11b"
                     /gene_synonym="Bin1b; EG546038; Ep2c/h; Ep2e; Spag11;
                     Spag11c/h"
                     /note="sperm associated antigen 11B"
                     /db_xref="GeneID:546038"
                     /db_xref="MGI:MGI:3647173"
     exon            1..100
                     /gene="Spag11b"
                     /gene_synonym="Bin1b; EG546038; Ep2c/h; Ep2e; Spag11;
                     Spag11c/h"
                     /inference="alignment:Splign:2.1.0"
     CDS             40..381
                     /gene="Spag11b"
                     /gene_synonym="Bin1b; EG546038; Ep2c/h; Ep2e; Spag11;
                     Spag11c/h"
                     /note="isoform c precursor is encoded by transcript
                     variant 2; sperm-associated antigen 11c/h;
                     beta-defensin-like peptide; Sperm-associated antigen 11"
                     /codon_start=1
                     /product="sperm-associated antigen 11B isoform c
                     precursor"
                     /protein_id="NP_001034652.2"
                     /db_xref="CCDS:CCDS22133.1"
                     /db_xref="GeneID:546038"
                     /db_xref="MGI:MGI:3647173"
                     /translation="MIPRLLPFFASLLFAALLFPGLSNASSINHLVTEPPSFPKDEFP
                     ARGVNGSQLLHHRVKRLPPRTPPYHEPEPNYQIVNCKKSEGQCQEYCNFMETQVGYCS
                     KKKEPCCLHPF"
     exon            101..247
                     /gene="Spag11b"
                     /gene_synonym="Bin1b; EG546038; Ep2c/h; Ep2e; Spag11;
                     Spag11c/h"
                     /inference="alignment:Splign:2.1.0"
     exon            248..642
                     /gene="Spag11b"
                     /gene_synonym="Bin1b; EG546038; Ep2c/h; Ep2e; Spag11;
                     Spag11c/h"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 accgtggacc cttcactgcc tgaagtcccc tctgcagcca tgataccaag actccttcct
       61 ttctttgcca gtctactttt tgcagccctg ctgtttccag gcctgtccaa tgcctcgtcc
      121 attaaccact tagtcactga acctcccagt ttccccaagg acgaatttcc tgctcgagga
      181 gtaaatgggt ctcagttgtt acatcacaga gtgaaacgat tacctccacg caccccccct
      241 taccacgagc ctgaaccaaa ttaccaaatt gtcaactgca agaaaagtga aggacaatgt
      301 caagaatact gtaatttcat ggaaacacaa gtgggctact gttcaaaaaa gaaagaaccc
      361 tgctgcttac atccgttctg atgttgctaa tcactaaagc tgaagtgacc tgcaaacctg
      421 tcagctctcc tgaactatca tgtccttcca ggtgtggcta caatagagaa gagcctaaac
      481 agaggaaggc atctctatcc atgtccagcc acctaagcct cttattatga caaaactaaa
      541 caacaaaggc tttgtacaca ctatcttacc aaaggcttgc ttaattcaga cacatctcca
      601 aagtcatacc atttatgctg gaataaacct tcataggaaa gc
//
