LOCUS       NM_001037909            1887 bp    mRNA    linear   ROD 04-AUG-2023
DEFINITION  Mus musculus Sp140 nuclear body protein like 2 (Sp140l2),
            transcript variant 2, mRNA.
ACCESSION   NM_001037909 XM_486477 XM_884540 XM_895644 XM_895667 XM_895681
            XM_895688 XM_895700 XM_895724
VERSION     NM_001037909.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1887)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1887)
  AUTHORS   Carninci P and Hayashizaki Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Methods Enzymol 303, 19-44 (1999)
   PUBMED   10349636
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK163341.1, AK047983.1 and AC123856.4.
            
            On Mar 14, 2007 this sequence version replaced NM_001037909.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC107246.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164133 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-99                AK163341.1         2-100
            100-869             AK047983.1         78-847
            870-1332            AK163341.1         880-1342
            1333-1723           AK047983.1         1395-1785
            1724-1730           AC123856.4         126279-126285       c
            1731-1887           AK047983.1         1793-1949
FEATURES             Location/Qualifiers
     source          1..1887
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 43.44 cM"
     gene            1..1887
                     /gene="Sp140l2"
                     /gene_synonym="4930565N07Rik; C130026I21Rik"
                     /note="Sp140 nuclear body protein like 2"
                     /db_xref="GeneID:620078"
                     /db_xref="MGI:MGI:3612702"
     exon            1..534
                     /gene="Sp140l2"
                     /gene_synonym="4930565N07Rik; C130026I21Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             503..1294
                     /gene="Sp140l2"
                     /gene_synonym="4930565N07Rik; C130026I21Rik"
                     /note="isoform 2 is encoded by transcript variant 2; SP140
                     nuclear body protein family member"
                     /codon_start=1
                     /product="SP140 nuclear body protein family member isoform
                     2"
                     /protein_id="NP_001032998.2"
                     /db_xref="CCDS:CCDS15109.1"
                     /db_xref="GeneID:620078"
                     /db_xref="MGI:MGI:3612702"
                     /translation="MAGGNNELSSRTIPEDQNEEESDDYQLMFKHFKENKVEIASAIT
                     KPFPFLMSLRDRDFISEQKFQEYQETCKNLVPVERVVYDVLSNVQKKFSRDLLKVIFS
                     KTHLKAYPDLKETLKHFFLNASKTNDEQAEEMLSLPQCNGGEGSSSCEQTCDEQEPQD
                     DLPSSLRQEAARRKKRPNWSNSKRRLQKKKPRQDEMMGVPSPGHGVQEKLKAVSRRTL
                     WKDDSSTNVKEVTKTLRARMRCGTCHWKGSAWANLSELVQGSRDT"
     exon            535..697
                     /gene="Sp140l2"
                     /gene_synonym="4930565N07Rik; C130026I21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            698..869
                     /gene="Sp140l2"
                     /gene_synonym="4930565N07Rik; C130026I21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            870..932
                     /gene="Sp140l2"
                     /gene_synonym="4930565N07Rik; C130026I21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            933..1013
                     /gene="Sp140l2"
                     /gene_synonym="4930565N07Rik; C130026I21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1014..1094
                     /gene="Sp140l2"
                     /gene_synonym="4930565N07Rik; C130026I21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1095..1887
                     /gene="Sp140l2"
                     /gene_synonym="4930565N07Rik; C130026I21Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1869..1874
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Sp140l2"
                     /gene_synonym="4930565N07Rik; C130026I21Rik"
                     /note="putative"
ORIGIN      
        1 aaaaacttta tgaagccaca cccgactttt cctactctgc tgctcaatta tcagatccca
       61 gcttctctgg ttctgactta ctagggtgcc aggacagttc caagtctgag agactgcaga
      121 caatctaact cttcctggtc tttccaggca ccgccccgct tagggttaag ggaccacttc
      181 cttcctatcc taaccagcca gctggcctta gacagctctg agcccttcgc tgaaacagac
      241 ccttccacct tctttcctta gaaggcagca ggagtcccag gtttctgggg acttgggctg
      301 tctttgctcc tcccctctgg ggcagagact gggggtggag ggcagtgctt tagtgcagtg
      361 ttgtcatagt taggcaattt cactttcctt tttctcctct ttggaggccc ctgaaggagt
      421 tctctctggg cttcccagag actcagaggg ggttcggtct accctgaacc cagttcaggg
      481 tcccttgcag tctgtgtagg ggatggcagg aggcaacaat gaactcagca gcaggacaat
      541 cccagaggac cagaatgaag aggagtcaga tgactatcag ctcatgttca agcacttcaa
      601 agaaaacaag gtggagatcg caagtgccat caccaagccg tttcctttcc tcatgagcct
      661 tcgagaccga gacttcatct cggagcagaa gtttcaggaa tatcaagaaa catgtaagaa
      721 cctggtccca gtggagagag tcgtgtacga cgtcctcagc aatgtacaga agaagtttag
      781 ccgggatctt ctgaaagtga tattcagcaa aacacatctg aaggcctacc ccgacttaaa
      841 ggagactcta aaacacttct tcctaaatgc atccaaaacg aatgatgaac aagcagagga
      901 gatgcttagc ctcccacaat gcaatggagg agagggaagt agttcttgtg aacaaacgtg
      961 tgatgaacaa gagccccagg atgacctgcc ctcatccctg agacaagaag cagcaagaag
     1021 aaaaaaacgt ccgaactggt caaattccaa aagaagactg cagaaaaaaa agccccgtca
     1081 agatgagatg atgggagtgc cctcacctgg acatggagtt caagagaagc tcaaggcggt
     1141 gagcaggagg actttgtgga aagatgactc atctacgaac gtgaaggagg tgaccaagac
     1201 actgagagca aggatgaggt gtggcacctg ccattggaaa ggctcagcct gggcaaatct
     1261 ctcagagctg gtgcaggggt cgagggatac atgacctccg tgttagcaga gagattttca
     1321 gagagaacag gcgaggggca aagagaggca aggaatggcc aaggagtttt tgataaagaa
     1381 acagccacag gtcacctcag ttgagaccta aggcagaggg tgtcaaccct ttagatttaa
     1441 caatcgtaaa gattactaaa aacttcccaa ggtgtacgtc tgtgttgttt atgtctacct
     1501 gtttctccat tattcataat ttaaaaaaaa cataatttaa aataaaatct ttgtttaaag
     1561 tgaaataatt tggtcaagga agcatgtgag agaaaattat ttctgaagca aaaacaaact
     1621 tagaagacgg gtgtccatgc aagctcctgc agttctcagt gatgtcgggc tctgtgagaa
     1681 acaggtagat gcttagagct gcatctgaac tcacgcacct gactgtggtt gtggcagagg
     1741 atggggagag gatctcgcag cacatggaac tccagtcctt tgcaagggca ctgcatgctc
     1801 ttaaccagcc ccatcatctc tcagctagac tctgaatcct tatctctggt actgttgttc
     1861 tctgctaaaa taaactgtta tgccagc
//
