LOCUS       NM_213615               1760 bp    mRNA    linear   ROD 04-AUG-2023
DEFINITION  Mus musculus Sp140 nuclear body protein like 1 (Sp140l1), mRNA.
ACCESSION   NM_213615 XM_355229
VERSION     NM_213615.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1760)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1760)
  AUTHORS   Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M,
            Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P,
            Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J,
            Mattick J, Hume DA, Lipovich L, Batalov S, Engstrom PG, Mizuno Y,
            Faghihi MA, Sandelin A, Chalk AM, Mottagui-Tabar S, Liang Z,
            Lenhard B and Wahlestedt C.
  CONSRTM   RIKEN Genome Exploration Research Group; Genome Science Group
            (Genome Network Project Core Group); FANTOM Consortium
  TITLE     Antisense transcription in the mammalian transcriptome
  JOURNAL   Science 309 (5740), 1564-1566 (2005)
   PUBMED   16141073
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC167036.6 and AK040872.1.
            
            On Feb 27, 2007 this sequence version replaced NM_213615.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK040872.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN01164134
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-517               AC167036.6         228038-228554       c
            518-915             AK040872.1         519-916
            916-1028            AC167036.6         209778-209890       c
            1029-1492           AK040872.1         1030-1493
            1493-1760           AC167036.6         206840-207107       c
FEATURES             Location/Qualifiers
     source          1..1760
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 43.44 cM"
     gene            1..1760
                     /gene="Sp140l1"
                     /gene_synonym="A530032D15Rik; Gm1888"
                     /note="Sp140 nuclear body protein like 1"
                     /db_xref="GeneID:381287"
                     /db_xref="MGI:MGI:3037746"
     exon            1..517
                     /gene="Sp140l1"
                     /gene_synonym="A530032D15Rik; Gm1888"
                     /inference="alignment:Splign:2.1.0"
     CDS             486..1121
                     /gene="Sp140l1"
                     /gene_synonym="A530032D15Rik; Gm1888"
                     /codon_start=1
                     /product="SP140 nuclear body protein family member"
                     /protein_id="NP_998780.2"
                     /db_xref="CCDS:CCDS15107.1"
                     /db_xref="GeneID:381287"
                     /db_xref="MGI:MGI:3037746"
                     /translation="MAGGDNELSSRTIPEDQNEEESDDYQLMFKHFKENKVEIASAIT
                     KPFPFLMSLRDRDFISEQKFQEYQETCKNLAPVERVVYDILSNVQKKFSRDLLKVIFS
                     KTHLKVYPDLKETLKHFFLNASKTNDEQAEEMLSLPQCNGGVLAQEHSNPHVKRSVPV
                     SCVPQHMCQKTWKQGWEAAKEKVWAPGGTFLQENPRSRESWQVWSLHCRPW"
     exon            518..680
                     /gene="Sp140l1"
                     /gene_synonym="A530032D15Rik; Gm1888"
                     /inference="alignment:Splign:2.1.0"
     exon            681..852
                     /gene="Sp140l1"
                     /gene_synonym="A530032D15Rik; Gm1888"
                     /inference="alignment:Splign:2.1.0"
     exon            853..915
                     /gene="Sp140l1"
                     /gene_synonym="A530032D15Rik; Gm1888"
                     /inference="alignment:Splign:2.1.0"
     exon            916..1028
                     /gene="Sp140l1"
                     /gene_synonym="A530032D15Rik; Gm1888"
                     /inference="alignment:Splign:2.1.0"
     exon            1029..1082
                     /gene="Sp140l1"
                     /gene_synonym="A530032D15Rik; Gm1888"
                     /inference="alignment:Splign:2.1.0"
     exon            1083..1760
                     /gene="Sp140l1"
                     /gene_synonym="A530032D15Rik; Gm1888"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1467..1472
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Sp140l1"
                     /gene_synonym="A530032D15Rik; Gm1888"
                     /note="putative"
ORIGIN      
        1 atgaagccac acccgacttt tcctactctg ctgctcaatt atcaggtccc agcttctctg
       61 gttctgactt actagggtgc caggacagtt ccaagtctga gagactgcag acaatctaac
      121 tcttcctggt ctttccaggc accgcccccg cttagggtta agggaccact ttcttcctat
      181 cctaaccagc cagctggcct tagacagctc tgagcccttc gctgaaacag acccttccac
      241 cttctttcct tagaaggcag caggcgtccc aggtttctgg ggacttgggc tgtctttgct
      301 cctcccctct ggggcagaga ctaggggtgg agggcagtgc attagtgcag tgttgtcata
      361 gttaagcaat ttcactttcc tttttctcct ctttggaggc ccctgaagga gttctctctg
      421 ggcttcccag agactcagag gggttcggtc taccctgaac cggttccttg gagtctgtgt
      481 aggggatggc aggaggcgac aatgaactca gcagcaggac aatcccagag gaccagaatg
      541 aagaggagtc agatgactat cagctcatgt tcaagcactt caaagaaaac aaggtggaga
      601 tcgcaagtgc catcaccaag ccgtttcctt tcctcatgag ccttcgagac cgagacttca
      661 tctcggagca gaagtttcag gaatatcaag aaacatgtaa gaacctggcc ccagtggaga
      721 gagtcgtgta cgacatcctc agcaatgtac agaagaagtt tagccgggat cttctgaaag
      781 tgatattcag caaaacacat ctgaaggtct accccgactt aaaggagact ctaaaacact
      841 tcttcctaaa tgcatccaaa actaatgatg aacaagcaga ggagatgctt agcctcccac
      901 aatgcaatgg aggagttttg gcccaggagc acagcaaccc acacgtgaaa agaagtgttc
      961 ctgtgtcatg tgttccccaa catatgtgcc agaagacctg gaagcaagga tgggaagcag
     1021 ccaaggagaa ggtgtgggca ccaggaggaa cattcctgca agaaaaccca agaagcagag
     1081 aatcctggca ggtctggagt ctgcattgta gaccatggta gcctggaacc cacagagatc
     1141 tgcttgcctc ttgtttcctg aatagtggga ttagaggcat gtttcatcca gcctttggga
     1201 cctttgagga ggaatttcaa atactaatgt ggaaaaggcg tggtgtgctg tgacgggatt
     1261 tgaaagactc agtgaggact cagcaggaag tgaggagcgt tctggaaaaa acctacgttt
     1321 cttcagtcta cacccttcta tttgaacata tgaccataaa ggagggttca gtgtctttgc
     1381 aattcttatt ttacattaaa tgtatagtgg aaagcacaaa tcctaagcac agcctttgaa
     1441 ggatcctgct aattgtatgt cttaacaata aaatcttgtg gagacacaga acatgacctt
     1501 gaagctgaca agattttctg tgcctttcgt tgccccttat tcatcaaggc agacacttat
     1561 tgtccaagga tacttagttt aggttgtttt taagtgcttt atgagtaaga tttcccagca
     1621 tgttctttag tgtaaaggtt gctttctcca cagaatgatt ctgctgtgaa cttttgttga
     1681 agaatgcagt ggcagttggt tcctttttat tgctatgcag tctactttgt ctgagtaccc
     1741 caattttttt gtatgctctc
//
