LOCUS       XM_030242286            9139 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus SRY (sex determining region Y)-box 6
            (Sox6), transcript variant X20, mRNA.
ACCESSION   XM_030242286
VERSION     XM_030242286.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000073.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_030242286.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9139
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="7"
     gene            1..9139
                     /gene="Sox6"
                     /gene_synonym="SOX-LZ"
                     /note="SRY (sex determining region Y)-box 6; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 7 mRNAs, 11 ESTs, 211 long SRA reads, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 21 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:20679"
                     /db_xref="MGI:MGI:98368"
     CDS             610..3093
                     /gene="Sox6"
                     /gene_synonym="SOX-LZ"
                     /codon_start=1
                     /product="transcription factor SOX-6 isoform X3"
                     /protein_id="XP_030098146.1"
                     /db_xref="GeneID:20679"
                     /db_xref="MGI:MGI:98368"
                     /translation="MSSKQATSPFACTADGEEAMTQDLTSREKEEGSDQHPASHLPLH
                     PIMHNKPHSEELPTLVSTIQQDADWDSVLSSQQRMESENNKLCSLYSFRNTSTSPHKP
                     DEGSREREIMNSVTFGTPERRKGSLADVVDTLKQKKLEEMTRTEQEDSSCMEKLLSKD
                     WKEKMERLNTSELLGEIKGTPESLAEKERQLSTMITQLISLREQLLAAHDEQKKLAAS
                     QIEKQRQQMDLARQQQEQIARQQQQLLQQQHKINLLQQQIQVQGHMPPLMIPIFPHDQ
                     RTLAAAAAAQQGFLFPPGITYKPGDNYPVQFIPSTMAAAAASGLSPLQLQKGHVSHPQ
                     INPRLKGISDRFGRNLDPSEHGGGHSYNHRQIEQLYAAQLASMQVSPGAKMPSTPQPP
                     NSAGAVSPTGIKNEKRGTSPVTQVKDETTAQPLNLSSRPKTAEPVKSPTSPTQNLFPA
                     SKTSPVNLPNKSSIPSPIGGSLGRGSSLDILSSLNSPALFGDQDTVMKAIQEARKMRE
                     QIQREQQQQPHGVDGKLSSMNNMGLSNCRTEKERTRFENLGPQLTGKSSEDGKLGPGV
                     IDLTRPEDAEGSKAMNGSAAKLQQYYCWPTGGATVAEARVYRDARGRASSEPHIKRPM
                     NAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSKIHLE
                     KYPNYKYKPRPKRTCIVDGKKLRIGEYKQLMRSRRQEMRQFFTVGQQPQMPITTGTGV
                     VYPGAITMATTTPSPQMTSDCSSTSASPEPSLPVIQSTYGMKMDGASLAGNDMINGED
                     EMEAYDDYEDDPKSDYSSENEAPEPVSAN"
ORIGIN      
        1 tgggacagcg gagggacgcg aggcagtcga gcgcagcctt tggcagagcc gcggctggcc
       61 gggaggggac tgggaggagg gtgctcgccg gcgggcaggc aagcgggcga gtcgaggtag
      121 agaaaggggc ccggcgccgc tcccttgctg tggacaccct gttcctcagg atgcctgcct
      181 ctctcggaga gttgtgcctt actccggagg cggtgacaga tctgcgtggc gggtttctgg
      241 ttttcttgcc cccacccctt ccccaaatca ctccgagaaa acacatgttg tagccgcaga
      301 taactgtgcg taggacaccg aggcaaaagg gcagggagag acagccaaag ccacctttga
      361 cagcagaagt gttatcgcca tcgcaagtat tcgtccggaa atctgtctgc cctcttggcc
      421 cacctaattc ctccaccttc gcctccccaa gtagataatc tatagaagtg ggaatgagat
      481 gaaaaagaag tcaggtggct tagagagtga attgttaagt ctccgtaaag ttcgaggtca
      541 cgttcatgaa ttcaaaggcg atttaccagt gacttctggg tgctgggtga tcctcgtgta
      601 taactaagaa tgtcttccaa gcaagccacc tctccatttg cctgtacagc ggatggagag
      661 gaagcaatga cccaggactt gacctcaagg gaaaaggaag agggcagtga tcaacacccg
      721 gcctcccatc tgcctctgca ccccataatg cacaacaaac ctcactctga ggagctgcct
      781 acacttgtca gtaccattca acaagatgct gactgggaca gcgttctgtc atctcagcaa
      841 agaatggagt cagagaataa taagttatgt tccctatatt ccttccgaaa tacgtctacc
      901 tcaccacata agcctgacga agggagtcgg gagcgtgaaa taatgaacag tgttactttt
      961 ggaaccccgg aacgccgcaa agggagcctt gccgatgtgg tggatacgct gaagcagaag
     1021 aagctggagg agatgactcg gacagaacaa gaggattcct cctgcatgga aaaactactt
     1081 tcaaaagatt ggaaggaaaa aatggaaaga ctaaatacga gtgaacttct tggagaaatc
     1141 aaaggtacac ctgagagcct tgcagagaaa gaacggcaac tctccaccat gattacccag
     1201 ctgatcagct tgcgggagca gctcctggca gcccatgatg aacagaaaaa gctggcagca
     1261 tcgcagatcg agaaacagcg gcagcaaatg gaccttgctc gccaacagca agaacagatc
     1321 gcaagacaac agcagcaact tctacagcag cagcacaaga ttaatctcct gcagcaacag
     1381 atccaggttc aggggcacat gcctccgctc atgatcccaa tttttccaca tgaccagcgg
     1441 accttggcag cagctgctgc tgcccaacag ggattcctct tcccccctgg aataacatac
     1501 aagccaggtg ataactaccc cgtacagttc attccgtcaa caatggcagc tgctgctgct
     1561 tctggactca gccctttaca gcttcagaag ggtcatgttt cccacccaca aattaaccca
     1621 aggctaaagg gcataagtga ccgttttggc aggaatttgg acccctctga acatggtggt
     1681 ggccactctt acaaccacag acagattgag cagctctatg ccgctcagct ggccagcatg
     1741 caggtgtcac ctggagcaaa gatgccatca actccacagc caccaaactc ggcaggggca
     1801 gtctcaccta ctgggataaa aaatgaaaag agagggacca gccctgtaac tcaagttaag
     1861 gatgaaacaa cagcccagcc gctgaatctc tcatcccggc ctaagacagc agagcctgtg
     1921 aagtccccaa catctcccac ccagaacctc ttcccagcca gcaaaaccag ccctgtcaac
     1981 ctgccaaaca aaagcagcat ccccagcccc attggaggaa gcctggggag aggatcctct
     2041 ctagatatac tatccagtct caactctcct gccctgtttg gggaccagga cacagtgatg
     2101 aaagccattc aggaggctcg gaagatgcga gaacagatcc agcgggagca acaacagcag
     2161 ccacacggag ttgatgggaa actgtcctcc atgaacaaca tggggctgag caactgcagg
     2221 actgagaagg aaagaacacg ctttgagaac ctgggtcccc aattaacagg aaagtcaagt
     2281 gaagatggaa aactgggccc gggtgtcatc gatctcactc ggccagagga cgcagaagga
     2341 agcaaagcaa tgaatggctc tgcagctaaa ctacagcagt attattgttg gccaacagga
     2401 ggcgccactg tggctgaagc ccgtgtctac agggatgccc gcggccgtgc cagcagcgaa
     2461 ccccacatca agcgaccaat gaatgcgttc atggtttggg caaaggacga aaggaggaaa
     2521 attcttcagg ccttccctga catgcataac tccaacatta gcaaaatctt aggatctcgc
     2581 tggaaatcca tgtccaacca ggagaagcaa ccttactatg aagaacaggc ccggctaagc
     2641 aaaatccacc tagagaagta cccaaactac aagtacaaac cccggccgaa gcgcacatgc
     2701 atcgtggatg gcaagaagct ccggattggg gagtacaagc aactgatgcg ctcgcgaagg
     2761 caggagatgc gacagttctt cactgtgggg caacagcctc agatgcccat caccacagga
     2821 acaggtgttg tgtatcctgg tgctattact atggcaacga ccacaccatc acctcagatg
     2881 acatctgact gctctagcac ctctgccagc cccgagccca gcctccctgt catccagagc
     2941 acgtatggta tgaagatgga cggcgcaagc ctggctggga acgacatgat taatggagag
     3001 gatgaaatgg aagcctatga cgactacgaa gatgatccca aatcagacta tagcagcgag
     3061 aatgaggccc cagagcctgt cagtgccaac tgaggagctt ttgtttgctg aattaaaaca
     3121 ctctgacatt tcgctccctt tcccccaaca acaacaacaa agttcttaaa gagcccgcat
     3181 gcatttgtgg ctccacaata catcagcaga atggtcttaa ttgcttcgta acgtgtgaga
     3241 cagattacgt tttcctgatt tttcataaac ttgagttttt gtcgttaccg ttactgttgt
     3301 tgtttattta ggtgaagacg tattaaatat gagacaccgg gacttggaaa cttatctctg
     3361 cccatcgccg tcttatgagt cttacatttc tgtcttacta tttttctttt ggatgttgac
     3421 aaagggttta agttactgtt ttagatgggg ttaaacattc tcactcaggt atgctgtgcc
     3481 ggctacaggt tgtgaatgtg tttttattct gaattacttt agaaaacaac tgaggatttc
     3541 gtattgtgaa accggacaag tccacggcgt gagcggctgc atatagaaca tgttcaaaag
     3601 gcctcggaat tccatttgtt tcaatgtgta gaattcaact ttgaatgtgc caaacttttt
     3661 tcataacttt tgaatcttaa ctattttaaa agtcttacag gagacactgc aaagtcttag
     3721 acaatctttg acatcttaaa ataaaacagc aaaccacatt ttttttccag aaaatggtga
     3781 agtactcagg aatctggaga caagatattg taaggaatga gcaaggctgc cacagtgcgt
     3841 gaacccaatt gtgtttgcct cttgatgtgc catcagtgtg tggcgtggga tgacatagat
     3901 cagagcaatc accacaccag acaccacacg gtggactccc ctgtctgaga ccgcctctca
     3961 ctacatccat tcttaccttg cctttgccct gacattcaac cttaacacat tgttctctta
     4021 aataatttat tcattccaga atgtcaaggg tccacttact atttatttta aaaattattg
     4081 gtggcattaa tttaatattt ttttgccctc cttgcccttt aacctctttt tcctgctgga
     4141 tacaaaagat gtacatagca atctcatgtc cccagagccc ctggaaacat ttctgaagtg
     4201 atgctagtac atgcatatat tgttgttttt aaagacaagt gtgtagctgg ctgcagggtt
     4261 gtgcatctgc gtcaaggtat cctacattta aacatgtatg cccccaggag tcaccatgac
     4321 cttgggtctt tgactagagt ttctccctca ttgagttttt cagtaaacag tagaacctga
     4381 gttccattca gcagtgagag tcagcagtgg tcactgccag tcaaggagcc tctcacagcc
     4441 actctgaagc ccaaggacca tgggccacac ggggtctact ttggacccgg cattctgtca
     4501 cctttattga gctacctggt cccagctggc acatccatgg agatctttgc aaaactctac
     4561 aggttgttag acaactccga ggaaatccag gaagaaagga aaccacaggc aagggaagca
     4621 atggtgagct gccagctcct agggacagat gctagaggta cccacagctc ccctgaagac
     4681 ctcgtttctc agtggctgct cgtgaacgct gctgctgata agctcttgcc actgaaggtg
     4741 agctctggag actgagacat gctgcagggc tgagaggtgt cagggctccc tctctcatct
     4801 cctaactaca ggcagttcta ctgttgtgag tttgaccatc ctgaacccag gcctgttgtt
     4861 ttcagggggc cttactcaga gcccttcagt ggggggtgtc agtgaacagt atagcctagc
     4921 atctaagcat caggaaaaga acagctccat caaaaattga gccattttgt cacttgggaa
     4981 aagtagtaaa gcttcatatt tatttaaaga gtgctccagg ccatagctaa tagcaataaa
     5041 gtaggtctag ccaagagatg accagctgag tcattagctg tgagtgctct ccataagctg
     5101 tttaaggtac tgctagggat gtttgttctt aagattaact ggggattgga attttgttct
     5161 tgtacattga tttcatatga ggaggggtca cttttcaaaa acaaaatgag tatttattat
     5221 gtcttactga tttctcggat ctctcttcct cagtttctcc tcatgcttcc ccacatgtct
     5281 ttggcttctg ctcccattgg tatgtttgtt tttgtttttg tttgtttgtt ctttttttta
     5341 aaaaagaaaa ctgtgctgca taggtagaat gttgtatagc tagcattgta ttgtatgtaa
     5401 ttaattttgc acaaaggcaa acatttagca cagtagttaa ttttgtttgt ttttatgacc
     5461 atgccaaaat aatattctgg gctagtagag aacaaaggac tgttctttag gattgaaact
     5521 tgattttgct tatagtaaga aaaagaaaaa gaaaaaaaaa atcccacaca ctcacagatg
     5581 tcgtttcgta agtgttacaa gcactggata taaatggtat ttttatcact gactaatgtg
     5641 aaactggtat ggaaactaca tgaacaaaag tcacctgttt cgactcgtgt gggcttgcct
     5701 cacagttgcc ggatctgagt catttttacg tcttgttatt tcatttattt atgcaaaata
     5761 catgtgtgta ggaacgctct gtgtcagctc cagctcggcc tcagcactgg gggccagtaa
     5821 cttctagcca tattctcaag tgcaaaagct gtccgggaat gactgggtat gaatgcctct
     5881 ttcattggct cagacagtga tgctgtattc aaatctaaat tttgtgcata cacagtttat
     5941 tctatttatt agccacactt ggctctaaat atccatggga atggagaatg acaatcacag
     6001 agatcactta catcagtggg gcttaagcaa agtttttatg acttcaccat ctcattttta
     6061 gagttttcta attgtgtaaa tataacatag aaatagaatt tatttttggt tcatgaattc
     6121 ctagtgacat ataagttatg aatcttcttt ctgttctcta ttcatatgtg ttgctccgca
     6181 ctaaaagctg gcccatcaca tttagcttca gtgaggcagt gtctaccctc agccaagaca
     6241 gcaggacccc tacctgcttc tcacacagtc tggaacccgc tggtccccca gctcagactc
     6301 cccctatttc taaataggaa gctgaggagt tgcacacact gagtttccag cagagttaaa
     6361 agaaagtcag cttgctttgg gaatccatac ccatctgtcc agatagttct gtggccccag
     6421 aatggcaaga agcaggagtt gtagttcaga ggtaaagatc tgcctgcaag gttagtataa
     6481 accccacagc accagtcaag ggcattctga aatcaccttc ttgcaatgtt ccattcccca
     6541 gtttacacta gctttaaatc agagcccagg tttgtctcca tcaaagaact cacaggctca
     6601 ggtctttctt tgtcaactgg gaacagcagc attgatagac agcctactta ctaatgaaca
     6661 ggttctatgg aacaggaagg aagggcagag aggaaggaac acagggacac agaaaaaaaa
     6721 aaggttcttc cgtggacatg agaagcctag ttggcaattt ctcttcctcg ctggcaaatt
     6781 ccaggccatg ttgttttcgc aaacactctc tcaacctttc aggtttgcat catgagctat
     6841 ttgatacctt ctagcctgtc ctcagcctgc attcctcctc caaggctgac aacagctccc
     6901 ttctccaagg cctgacactg actcccaagc cagcttctaa attcaggtgt gggctgccag
     6961 tgctgttcca cttgtcaaat gctggcctcc tctggacatt tgccctgtgt gagtgagccg
     7021 gaggagtgct aaaaaaaggt gtgatccctc tagggctgac accaggctcc tgcagagcca
     7081 ggctacatct ctagtataca gtctctgagc caggagctca gcaatcaagg atgaccacct
     7141 ccttcagtag aaacatggcc tggtcatggc tgatgccact gaggagggtg ttgctttcca
     7201 gtctctcagt tccaataagc tgactttacc agctccttag ggaaaggcaa cacacatcac
     7261 ttcatagttt tgagccatag aagtcctgta ccaagtgcca acaacagcaa agatctgtgt
     7321 ctagaagaat cagttgagat gatggccagc caggtcttcc tctttactga gaaagcggca
     7381 accaattggc tgtgcccttg cctggtgtgc acatatcctc taaggatcag gctgaccctt
     7441 gagctcattc tccaagtgta acaacagcgg tggcctggct tgtctcactt gccctgcctt
     7501 tttttttagg ccctctatcc ctgatgtggc ttctttgtga gcaggtattc ctcttgccaa
     7561 tcatgttgtt tctaatgctg cacatgatcg tgcatctgca cagcaaaagt agattgaaaa
     7621 tcatgacatt gcaagcatag ttctttgtcc ccatcctgac ctttccaaac acctataaac
     7681 tggccctctc gagggcagag gaacagggat tctgggaggg atggaaaagt caaggcttcc
     7741 tgcagattcc catctattga caaagaagct ggtggaaggc gagtagatga tgtttcttgc
     7801 tggtcttatt tccacagaac tgtaggtgta gagcggggct ttcatgtgtg gcactctggg
     7861 agtctggggg atgtgcgaac atttaattgc catcactata cgttgcaggt ctgctggtgt
     7921 gcgtcctcca ttgtctttct tggtcagaga gcatttactc tgtctccttt taaaacccag
     7981 ccttcattgt atcctcctcc agcttgtagc acattaggat gtttttagca cttgtttttg
     8041 ctcattcttg tatttgccat gtacaattct gaattaccct atacaagcct ctaagctgtt
     8101 actacataac ttatcttact gtaacccttt tctttgccta cattgtaatt tgtttgtgat
     8161 gtatattgtg agattgtatt ctatgttaat ttaatcagca caactcactg acatgctgga
     8221 ctgacatgct ggctgctgtt ttgaagtata aagcttgtgt agggctgtcc ggacaactac
     8281 aactctgttg ccaaggtact gtgcattggt tcccatagca acactgtggg tgtgaccctt
     8341 gaaactctag ggacattcgg cacaccctcc agtaaatttt aagtgcagat tttctttgtt
     8401 gaaactctat gaataccaca ggtacctacg tggcccatgg ctggtaacta ttttgggcaa
     8461 ttagaaaaac aaacaagcat taaaaaaact agtgtctatt gctgctttga atatgtttga
     8521 aagtctgaaa atgtaaatag tttatcaaaa aaaatcttgt acagtccagt gtaaagtttt
     8581 taaatgacct gaagggttac catcacagct tttccacact ctcctctgga tagtgataaa
     8641 gagaagtttg ctaaggactt aaagaattgg gaaaaaacaa cagaatctct tcaaacgcaa
     8701 aggagtggat cactgcccct agctttgtca catacacaga cctcttggat cttattggac
     8761 agtattggca tgagacaaac tcagcatgga acaccctcca gtgggacttg tccagggctt
     8821 tccagctctg cctcacaatt aagggacagg atgagataga aaggcgtgcc gtctttgtct
     8881 atcctggaat accttggcac cttagctact ttccccctct ttgcacaagg tgctttcccg
     8941 atatgtgtta gacacgccat ccttgggtga taatgtatat gccatgagag ggctcaggcc
     9001 cgcgggggag tgtctatagg aactgcctat ttatgctcat ttacctcaag actgtcctct
     9061 accctaaact agttgtcatc actccatctt ttgtactgct gttgacactt accaattaaa
     9121 gataaatttt gttttatga
//
