LOCUS       XM_036165986            7671 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus SRY (sex determining region Y)-box 5
            (Sox5), transcript variant X18, mRNA.
ACCESSION   XM_036165986
VERSION     XM_036165986.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000072.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7671
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="6"
     gene            1..7671
                     /gene="Sox5"
                     /gene_synonym="A730017D01Rik"
                     /note="SRY (sex determining region Y)-box 5; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 4 mRNAs, 10 ESTs, 776 long SRA reads, 10 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 16 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:20678"
                     /db_xref="MGI:MGI:98367"
     CDS             682..2832
                     /gene="Sox5"
                     /gene_synonym="A730017D01Rik"
                     /codon_start=1
                     /product="transcription factor SOX-5 isoform X12"
                     /protein_id="XP_036021879.1"
                     /db_xref="GeneID:20678"
                     /db_xref="MGI:MGI:98367"
                     /translation="MSSKRPASPYGETDGEVAMVTSRQKVEEEESERLPAFHLPLHEV
                     DGNKVMSSLAPYNSSTSPQKAEEGGRQSGESVSSAALGTPERRKGSLADVVDTLKQRK
                     MEELIKNEPEDTPSIEKLLSKDWKDKLLAMGSGNFGEIKGTPESLAEKERQLMGMINQ
                     LTSLREQLLAAHDEQKKLAASQIEKQRQQMELAKQQQEQIARQQQQLLQQQHKINLLQ
                     QQIQQVQGQLPPLMIPVFPPDQRTLAAAAQQGFLLPPGFSYKAGCSDPYPVQLIPTTM
                     AAAAAATPGLGPLQLQQFYAAQLAAMQVSPGGKLLGLPQGNLGAAVSPTSIHTDKSTN
                     SPPPKSKDEVAQPLNLSAKPKTSDGKSPASPTSPHMPALRINSGAGPLKASVPAALAS
                     PSARVSTIGYLNDHDAVTKAIQEARQMKEQLRREQQALDGKVAVVNSIGLSNCRTEKE
                     KTTLESLTQQLAVKQNEEGKFSHGMMDFNMSGDSDGSAGVSESRIYRESRGRGSNEPH
                     IKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLS
                     KQHLEKYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMRNRRQEMRQYFNVGQQAQIPIA
                     TAGVVYPSAIAMAGMPSPHLPSEHSSVSSSPEPGMPVIQSTYGAKGEEPHIKEEIQAE
                     DINGEIYEEYDEEEEDPDVDYGSDSENHIAGQAN"
ORIGIN      
        1 cgccgcaccc cggggcgcgc gccggccacg gtcaccggcg gctggagcgc tgccctcgcc
       61 tcccccattg ttcccacttg tctttttcgc cttttgttat ttatttccac cagcattgtg
      121 ttgtctccga agccgcctca tgaccagctg agggatttta cttcgtcctt gagagggaga
      181 gggagagaga gagagagcaa gagagagcga gagagggagc cagaggttgg ggtggggggg
      241 ggtgggagag agagagagag agagagagag agagagagag agagagagag agggacaggc
      301 gcgcacacac acatacgcgc gcgcacaccc cacacaaaca caccccgaca cagacacaca
      361 cagagtgcaa aaggcgagcc gccccatccc gtctccaggg tcctcggagg cccccgcccg
      421 ctgctgcgca tcccgcgtca gaggagcgat taaccagacc cgacactcca agctgttgtg
      481 gtgtcaagat ctacttccga cagaccctaa gaagtcttgg acaagcctcc cacatgtggc
      541 aggtgctgta ctggatgctg ttgacccaaa gatgatgatg aggctgttcc tgcccacaag
      601 gagctagcaa gccgtgtcat cagaacagag agtgtcgagg acatcgggaa gtaggagaga
      661 ctgaccccga ggctcaccag gatgtcttcc aagcgaccag cctctccgta tggggagaca
      721 gatggagagg tagccatggt gacaagcaga cagaaagtgg aagaggagga gagtgagagg
      781 ctcccagcct ttcaccttcc cttacatgaa gtcgatggca ataaagttat gtcttcatta
      841 gctccataca actcatctac ctcacctcag aaggcggaag aaggtgggcg acagagtggc
      901 gagtccgtgt cgagcgcagc cctggggact cccgagcggc gcaagggcag cttagcggat
      961 gtggtggaca ccctgaagca gaggaagatg gaagagctga tcaagaatga gccagaagac
     1021 actcccagta ttgaaaagct actctccaag gactggaaag acaagctcct ggcaatggga
     1081 tcagggaact ttggagaaat aaaagggact cctgagagcc tcgctgagaa ggagcggcag
     1141 ctcatgggta tgatcaatca gctgaccagt ctacgggagc aactcctggc tgcccacgat
     1201 gagcagaaga agttggctgc atctcagata gagaaacagc gtcagcagat ggagctggcc
     1261 aagcagcaac aggagcagat cgcgaggcaa cagcagcagc ttctgcagca acaacacaaa
     1321 atcaacttgc ttcagcaaca gatccagcag gttcaaggtc agctgccgcc attgatgatt
     1381 cccgtgttcc ctcctgacca gcggaccctc gcagcagctg cccagcaagg attcctcctt
     1441 cctcctggtt tcagctacaa ggctgggtgc agtgaccctt accctgttca gctgatccca
     1501 accactatgg cagctgctgc tgcagcaaca ccaggcttag gcccactcca gctgcagcag
     1561 ttctatgctg cccagctagc cgcaatgcag gtttctccag gagggaagct cctaggccta
     1621 ccccaaggca accttggtgc tgccgtgtct cctaccagca ttcacacaga caagagcaca
     1681 aacagtccac cacccaaaag caaggatgaa gtggcccagc cactgaacct atcagctaag
     1741 cccaagacct ctgatggcaa atcacctgca tcacccacct ctcctcacat gccagctctg
     1801 agaataaaca gtggggctgg ccccctcaaa gcctctgtcc cggcagcatt agctagtcct
     1861 tctgcaagag ttagcacaat aggctattta aatgaccacg atgctgtcac caaggcaatc
     1921 caagaagctc gccagatgaa agagcaactc aggcgagagc agcaagcgtt ggacgggaag
     1981 gtggccgtgg tgaacagcat aggtctcagc aactgccgga cagaaaagga aaaaacaaca
     2041 ctggagagcc tgactcagca gttggcagtt aaacagaatg aagaagggaa atttagccat
     2101 ggaatgatgg atttcaatat gagtggagat tctgacggaa gcgctggagt ctcagagtca
     2161 agaatttaca gggaatccag gggacgtggt agcaacgagc cccacataaa gcgtccaatg
     2221 aatgccttca tggtgtgggc gaaagatgaa cggaggaaaa tccttcaggc ctttcccgac
     2281 atgcacaatt ccaacatcag caagatactg ggatctcgct ggaaagctat gaccaaccta
     2341 gagaaacagc catactatga ggagcaggcc cgcctcagca aacagcacct ggagaagtac
     2401 ccggactaca agtacaagcc taggccaaag cgcacctgtc tggtggacgg caagaaactg
     2461 cgtatcgggg agtacaaggc catcatgcgg aaccggaggc aggaaatgcg acagtacttc
     2521 aacgttgggc aacaagcaca gatccccatc gcgacggccg gagttgtata ccccagcgcc
     2581 atcgccatgg caggaatgcc gtcccctcac ctgccctccg agcactcgag cgtgtccagc
     2641 agcccggagc ccgggatgcc cgtgatccag agcacttacg gcgccaaggg agaggagccc
     2701 cacatcaagg aagagatcca ggctgaggac atcaacggag agatttacga ggagtacgat
     2761 gaggaggagg aggacccgga tgtggattat gggagtgaca gcgaaaacca cattgcggga
     2821 caagccaact gataagggcc aacagactgt ggtgagccga ggacttgaag aagccctgtc
     2881 cggttcatcc ttcccagtgg ccaagcacat taactctctc atacactgac tgttatttta
     2941 actgttagtc ttatatagtt gggacatcag ctgacaaata gacctcagcc tcaaaaggct
     3001 cggaaagaaa agaaagaaag aaagaaagaa aaaaaattac aagcaaaaac gtcatcaaga
     3061 agaagagatc gaaataagct atgggttaaa cagtgccagt aactcagctg ctacacccca
     3121 gcactgaagt ctcacccgtc aacttttttt ttttttaata aactttatgg ctgtttgttc
     3181 tatattagaa atcctcactc aggtacacag tgccaacaag tggcttgtga atgtgttatg
     3241 ttgttctgtg ctacaatttt taaaaagaaa taagttttgt tctgttctgt tctgtttggg
     3301 ggcgggggga gtggggagga agggtggttc tgggtttgct cctcttttct tttccttttg
     3361 gttgttatct tgcacctgac agacaggggg aagactgcgg tcagttccct ccaccctcta
     3421 tctctctgct ttaaagatgg aggcatgtgc gaggggctgg gggcagagag gaaaacaaga
     3481 gcctgtgttt gccttcattg cttctacaca acagagtcaa caaccgtttt ccttagagac
     3541 ccctaaccct tgcacgagac accatatctt tgagcaagtg ccaaattcgt cccgaagcga
     3601 tcaccatctt catttgcttg tcccctcctt tcttctcgtc ccttcttccg ttaggacagt
     3661 gttaaacctt tagacagtcc ctgaaaagag ctgacacacc agcaactggt gagactgctt
     3721 ttcgttttgt tttgttttgt ttgtttttgg ttttctactt tttttctttt ctttttcttt
     3781 ttaatggaaa ctgtaggtgc cgttctcagg tgaaaagaga gagagacaga aatttagaga
     3841 aaaaaatatt ttctgatctt ggatttctgt gtgtgtgtgt gtgtgtgtgt gtgtgtatgt
     3901 atgtgtgtaa tcatggtaca ttagatacat tcctattggg gaataatgtc aggccattgt
     3961 gagcaacacc ctccatgtgg gaatagaatt ccacccctcc cgagcaagtg ggcttagaag
     4021 caatctcaac cttgactttg cacttccagg ggcaacggga ccaagtgtag agctcagaaa
     4081 ttctattttt caatttctag tatgctcatt gtcgggtgga cctggcggcc ctgtgtcccg
     4141 ggcacgtgca tggcaggcat ggaagttacc agcttctgga ggctcctcct ccctggacaa
     4201 tttgcttttt ctaatgtttg ctacttagtg acccgtgtgt gcgtgtgtgc gtgtgtgttt
     4261 ttcctgttga aactttgagc aaagcaatca tgattttgac tgaatctatt tgccattttc
     4321 cagaaataca gaattagctt atgtctccga tgttccatcc tttcctgacg aggaaacata
     4381 attgatggtt ttataagatt ttcttttcgt ctctccatgc aacgaggtta gagactgttt
     4441 gcatttcaca agtgtgggcc atgtgtattt gataccccaa ggaccaggat ttggttaaac
     4501 ttcactgcag caccacaaag tggagcctag atgcacagag agacccctta accagtataa
     4561 tggtccttca ctgtaatttg agcttgctag agatcaattg ctggtgctgg cagagtgcag
     4621 gctcagagca ataagcaagt atgagtggac caatgactcc aatcgacaac caaaaggtca
     4681 aggcagtggt aggcagacaa ctgcagccac ttcgggaccc tcccaactgt gtttaaacgg
     4741 agagagcacc tcagccaggg gcgtagttgt gttcctgtgt tccagtcctc tcatgttgcc
     4801 aaatgccacc ctcaagtttg ttttccatac ataaataagt aaaagaggag aaggaggagg
     4861 aggaagagga ggaggaggag gaggaggagg aggaggagga ggaggaggag gaggaggagg
     4921 aggaggaaaa caaaactcct ttctgttttt ttctcgctca gaaggtcttg ctttgaggtt
     4981 ttgctcggag gagcccatca cacctgcatg tcagaggttt tctgttcatg ggattttgtt
     5041 tttgtttttg tttttttcta atgactgtat tttcatttga attgcctctt tttgctagtg
     5101 taaaattatg attaaataat aataataata gtaataataa taacagtcag ctgttcccag
     5161 attagtaaat tatgtataat ttattttatt tctccctatt ttattctgct ttggatttgg
     5221 aagctgttag gtatttaaaa ctaatttcta tttctaactc atacacacat acacacatag
     5281 acacacgtct gtatgtgtac gtacacacaa atacttgctt ctccacccgt aacttgctct
     5341 gtgttaacag ttttagcccc ggtagcattg gttctggtat ttcatatgaa gcggtgaatt
     5401 aagaggaatg tcatgttcaa tcttaattaa cttatgctct ttcctctcat cttagttatt
     5461 taattaccaa ttatctagag ccagtttttg tttttgtttg ttttgtttcg aaacactctg
     5521 aataagaaaa aaaagacact tgtttttata caattataac gcatacaatg tgaaaacaga
     5581 tttattaaaa aaaaaaagtt tctctgcgtc ttaacaaatt tctcctgact gatgtgggtt
     5641 ctccactctc atgtgctggg tccctgtctc acagcacatt cgagacaagc ttggttttca
     5701 tttcctgacc ttgggcaaca agaacacttt gttttagctc caggtagatg ctgctgacag
     5761 gcatccaagg ccaaaacagc agtgaatcag agcaaactca ctctctggtt tgcttttgat
     5821 ttatttgagg gaaactgaaa ctgtgcatgg taacctgtag ctgctgaaac tctccagttg
     5881 agttgagttt atgttcataa ctgaactgtg cccagacaaa accacaaagc aagcccataa
     5941 tgacatgcca ttctctgtct ggacattttc ttcagcacat gttggctctg ctttgcccaa
     6001 gagttttccc taggggacaa caacagcaaa ggtaattcta ctcatggcta aagtacacat
     6061 aggtcacttg ggggaaagct gctgtaaata gcgacttaac gataacaaca caatgccctt
     6121 gctccattgg ttaggtgatg cttttaggta gaggatctga tagctttaca ttcgttctat
     6181 ggcacgcaga ggccaagtaa gatatggcag aggacataac ataaagtgga aagatgaaag
     6241 ttagcagtca acagccctcc ccccttccct ctcctcagct tataggttta agtcatgccc
     6301 atctgtcttt ctaccgcttc cccatcttcc ctttcacaca catttatacc aaaactgaag
     6361 agtaatattg ataatttctt cgtttttaca tttgttatgg gaacctctaa agctagtcac
     6421 atttgatata aatctaagaa aaatattcag agaagaaaat gggttaaagc cctttgtaag
     6481 tcaatgataa tttggctagt tattacaaac aggagaaaaa ttacacacac ttcagtgtaa
     6541 ttttacccaa agtagtcaag tgaactctga aagttcattt gcttctagct aagaactacc
     6601 tttgtgtaaa acccctccca gtgaacatac gtatcatggt tggaaccaaa tcttcccatg
     6661 gggtatgaat atgaaagcat taagtgttct atgatgaagc cacttcatat gtttgatttc
     6721 taaagtacaa tctaccttag tttgcttgaa ggagattatc tttcccattc cgtggtgtgc
     6781 tttcagacat ttccataatg cagaagctga ccgtgtcctc agaggcatcc cttctgtctc
     6841 acgtaaaaac acaaggaata aactatacca tccttactct aaagggtaaa ctattgaatt
     6901 gtaataactg tatatttaca aacaggttta taaaaatatt tgtctatcaa attaatagtg
     6961 aaataaaact ttatgaggtt tgcaaggaag aaatacgaaa gctacttaaa gtggctgatc
     7021 tatttcattg cctcttaggg cagagacatt tctgtagcca ggttgacaca gtatttaatt
     7081 gtgcagtccc acaggttgaa ggtgacatgc tgacgggtcc ctgtcctccc caagtgtctg
     7141 tcactggccc actaaaggca gtatttattc agctcccctg gctctaaagc acttagtcct
     7201 tctaacagtg cggatttcac aagtgaaaaa gttttgtttg tttgtttttt tgttttattt
     7261 gttttttact gatttaaaaa aaatagaaaa agagacaatc aatgcctgga gcttaaaaca
     7321 aagtctgtgc aaactaccat ctcacttgaa atttaataaa ataagaaatt gtgtaaatat
     7381 aacatagagt tatagatttc tattttgttc ataacatagt gtaatataag ttgtatattt
     7441 tcatgttttt gggttttatg ttatcattca tgccacaata agaataaaac aggagtttgt
     7501 gtactcttgg gaaaaagaaa aagaaaaaaa aaagatgtgg gtccccgcca gcctgttttt
     7561 tgcttttctg ttctcgtttt cagtttgttt tgtttgtttt ggccttcccc ctttcagtat
     7621 tactgccgtg caaggcacca ataaaacagc aaatgtgttc tttatctatt a
//
