LOCUS       XM_006506939            7873 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus SRY (sex determining region Y)-box 5
            (Sox5), transcript variant X15, mRNA.
ACCESSION   XM_006506939
VERSION     XM_006506939.5
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000072.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006506939.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7873
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="6"
     gene            1..7873
                     /gene="Sox5"
                     /gene_synonym="A730017D01Rik"
                     /note="SRY (sex determining region Y)-box 5; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 4 mRNAs, 10 ESTs, 849 long SRA reads, 10 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 27 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:20678"
                     /db_xref="MGI:MGI:98367"
     CDS             845..3034
                     /gene="Sox5"
                     /gene_synonym="A730017D01Rik"
                     /codon_start=1
                     /product="transcription factor SOX-5 isoform X10"
                     /protein_id="XP_006507002.1"
                     /db_xref="GeneID:20678"
                     /db_xref="MGI:MGI:98367"
                     /translation="MLTDPDLPQEFERMSSKRPASPYGETDGEVAMVTSRQKVEEEES
                     ERLPAFHLPLHEVDGNKVMSSLAPYNSSTSPQKAEEGGRQSGESVSSAALGTPERRKG
                     SLADVVDTLKQRKMEELIKNEPEDTPSIEKLLSKDWKDKLLAMGSGNFGEIKGTPESL
                     AEKERQLMGMINQLTSLREQLLAAHDEQKKLAASQIEKQRQQMELAKQQQEQIARQQQ
                     QLLQQQHKINLLQQQIQQVQGQLPPLMIPVFPPDQRTLAAAAQQGFLLPPGFSYKAGC
                     SDPYPVQLIPTTMAAAAAATPGLGPLQLQQFYAAQLAAMQVSPGGKLLGLPQGNLGAA
                     VSPTSIHTDKSTNSPPPKSKDEVAQPLNLSAKPKTSDGKSPASPTSPHMPALRINSGA
                     GPLKASVPAALASPSARVSTIGYLNDHDAVTKAIQEARQMKEQLRREQQALDGKVAVV
                     NSIGLSNCRTEKEKTTLESLTQQLAVKQNEEGKFSHGMMDFNMSGDSDGSAGVSESRI
                     YRESRGRGSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNL
                     EKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMRNRRQEMRQ
                     YFNVGQQAQIPIATAGVVYPSAIAMAGMPSPHLPSEHSSVSSSPEPGMPVIQSTYGAK
                     GEEPHIKEEIQAEDINGEIYEEYDEEEEDPDVDYGSDSENHIAGQAN"
ORIGIN      
        1 tttccttgaa ggggcctctg ctatatttca atctgtcaaa gttgcttttc ttcccttaga
       61 acaatgcctg attgttgtgt gtgagtgagt gtgtatgtgt gtgtgtgtgt gtgtgtgtgt
      121 gtgtgtgtgt gcgtgcgcgt gcgcgcgcga gcacacccat gccagtgtgt ttccctgtgc
      181 gcttggagag tcggggagag ggggtgagag gaataacaat tctttgtgta aaaatgctgt
      241 gactaatgtg taatcatttt gcttaattag ttaatgctca cagtttgatt ggggctccgt
      301 tatgacaaag ttatttttta atcagcccca aatgtatttt gcacaatgat actggtggtg
      361 gtggtggtgt gcgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgcgtga gcgtgttgac
      421 ttttattatt tagaggagag agagagagca tgggagacta gttgacttct accattcagg
      481 gatgtccagg agagagaatt cagaggaaag aactggcgcc tggaggttgt ctaatgccta
      541 gcagtcagag tgtgcggctg tgcagagggg gagtagccag accgctgctg gaagtgtact
      601 acccctttaa gagaatggtc aaggagtcct aggagagaga gagagagaga gagagagaga
      661 gagagagaga gagagaaggg gaagggggag agggagaggc agaaagggag agggggagag
      721 agagtgagaa gagacagaaa gagaatccat tggtttagaa ggtttggacc gacttgacag
      781 gttcagttgg agccagccga tcataggtgg ccgctgtgac aaagggaaac tgtgcttttc
      841 cagcatgctt actgaccctg atttacctca ggagtttgaa aggatgtctt ccaagcgacc
      901 agcctctccg tatggggaga cagatggaga ggtagccatg gtgacaagca gacagaaagt
      961 ggaagaggag gagagtgaga ggctcccagc ctttcacctt cccttacatg aagtcgatgg
     1021 caataaagtt atgtcttcat tagctccata caactcatct acctcacctc agaaggcgga
     1081 agaaggtggg cgacagagtg gcgagtccgt gtcgagcgca gccctgggga ctcccgagcg
     1141 gcgcaagggc agcttagcgg atgtggtgga caccctgaag cagaggaaga tggaagagct
     1201 gatcaagaat gagccagaag acactcccag tattgaaaag ctactctcca aggactggaa
     1261 agacaagctc ctggcaatgg gatcagggaa ctttggagaa ataaaaggga ctcctgagag
     1321 cctcgctgag aaggagcggc agctcatggg tatgatcaat cagctgacca gtctacggga
     1381 gcaactcctg gctgcccacg atgagcagaa gaagttggct gcatctcaga tagagaaaca
     1441 gcgtcagcag atggagctgg ccaagcagca acaggagcag atcgcgaggc aacagcagca
     1501 gcttctgcag caacaacaca aaatcaactt gcttcagcaa cagatccagc aggttcaagg
     1561 tcagctgccg ccattgatga ttcccgtgtt ccctcctgac cagcggaccc tcgcagcagc
     1621 tgcccagcaa ggattcctcc ttcctcctgg tttcagctac aaggctgggt gcagtgaccc
     1681 ttaccctgtt cagctgatcc caaccactat ggcagctgct gctgcagcaa caccaggctt
     1741 aggcccactc cagctgcagc agttctatgc tgcccagcta gccgcaatgc aggtttctcc
     1801 aggagggaag ctcctaggcc taccccaagg caaccttggt gctgccgtgt ctcctaccag
     1861 cattcacaca gacaagagca caaacagtcc accacccaaa agcaaggatg aagtggccca
     1921 gccactgaac ctatcagcta agcccaagac ctctgatggc aaatcacctg catcacccac
     1981 ctctcctcac atgccagctc tgagaataaa cagtggggct ggccccctca aagcctctgt
     2041 cccggcagca ttagctagtc cttctgcaag agttagcaca ataggctatt taaatgacca
     2101 cgatgctgtc accaaggcaa tccaagaagc tcgccagatg aaagagcaac tcaggcgaga
     2161 gcagcaagcg ttggacggga aggtggccgt ggtgaacagc ataggtctca gcaactgccg
     2221 gacagaaaag gaaaaaacaa cactggagag cctgactcag cagttggcag ttaaacagaa
     2281 tgaagaaggg aaatttagcc atggaatgat ggatttcaat atgagtggag attctgacgg
     2341 aagcgctgga gtctcagagt caagaattta cagggaatcc aggggacgtg gtagcaacga
     2401 gccccacata aagcgtccaa tgaatgcctt catggtgtgg gcgaaagatg aacggaggaa
     2461 aatccttcag gcctttcccg acatgcacaa ttccaacatc agcaagatac tgggatctcg
     2521 ctggaaagct atgaccaacc tagagaaaca gccatactat gaggagcagg cccgcctcag
     2581 caaacagcac ctggagaagt acccggacta caagtacaag cctaggccaa agcgcacctg
     2641 tctggtggac ggcaagaaac tgcgtatcgg ggagtacaag gccatcatgc ggaaccggag
     2701 gcaggaaatg cgacagtact tcaacgttgg gcaacaagca cagatcccca tcgcgacggc
     2761 cggagttgta taccccagcg ccatcgccat ggcaggaatg ccgtcccctc acctgccctc
     2821 cgagcactcg agcgtgtcca gcagcccgga gcccgggatg cccgtgatcc agagcactta
     2881 cggcgccaag ggagaggagc cccacatcaa ggaagagatc caggctgagg acatcaacgg
     2941 agagatttac gaggagtacg atgaggagga ggaggacccg gatgtggatt atgggagtga
     3001 cagcgaaaac cacattgcgg gacaagccaa ctgataaggg ccaacagact gtggtgagcc
     3061 gaggacttga agaagccctg tccggttcat ccttcccagt ggccaagcac attaactctc
     3121 tcatacactg actgttattt taactgttag tcttatatag ttgggacatc agctgacaaa
     3181 tagacctcag cctcaaaagg ctcggaaaga aaagaaagaa agaaagaaag aaaaaaaatt
     3241 acaagcaaaa acgtcatcaa gaagaagaga tcgaaataag ctatgggtta aacagtgcca
     3301 gtaactcagc tgctacaccc cagcactgaa gtctcacccg tcaacttttt ttttttttaa
     3361 taaactttat ggctgtttgt tctatattag aaatcctcac tcaggtacac agtgccaaca
     3421 agtggcttgt gaatgtgtta tgttgttctg tgctacaatt tttaaaaaga aataagtttt
     3481 gttctgttct gttctgtttg ggggcggggg gagtggggag gaagggtggt tctgggtttg
     3541 ctcctctttt cttttccttt tggttgttat cttgcacctg acagacaggg ggaagactgc
     3601 ggtcagttcc ctccaccctc tatctctctg ctttaaagat ggaggcatgt gcgaggggct
     3661 gggggcagag aggaaaacaa gagcctgtgt ttgccttcat tgcttctaca caacagagtc
     3721 aacaaccgtt ttccttagag acccctaacc cttgcacgag acaccatatc tttgagcaag
     3781 tgccaaattc gtcccgaagc gatcaccatc ttcatttgct tgtcccctcc tttcttctcg
     3841 tcccttcttc cgttaggaca gtgttaaacc tttagacagt ccctgaaaag agctgacaca
     3901 ccagcaactg gtgagactgc ttttcgtttt gttttgtttt gtttgttttt ggttttctac
     3961 tttttttctt ttctttttct ttttaatgga aactgtaggt gccgttctca ggtgaaaaga
     4021 gagagagaca gaaatttaga gaaaaaaata ttttctgatc ttggatttct gtgtgtgtgt
     4081 gtgtgtgtgt gtgtgtgtat gtatgtgtgt aatcatggta cattagatac attcctattg
     4141 gggaataatg tcaggccatt gtgagcaaca ccctccatgt gggaatagaa ttccacccct
     4201 cccgagcaag tgggcttaga agcaatctca accttgactt tgcacttcca ggggcaacgg
     4261 gaccaagtgt agagctcaga aattctattt ttcaatttct agtatgctca ttgtcgggtg
     4321 gacctggcgg ccctgtgtcc cgggcacgtg catggcaggc atggaagtta ccagcttctg
     4381 gaggctcctc ctccctggac aatttgcttt ttctaatgtt tgctacttag tgacccgtgt
     4441 gtgcgtgtgt gcgtgtgtgt ttttcctgtt gaaactttga gcaaagcaat catgattttg
     4501 actgaatcta tttgccattt tccagaaata cagaattagc ttatgtctcc gatgttccat
     4561 cctttcctga cgaggaaaca taattgatgg ttttataaga ttttcttttc gtctctccat
     4621 gcaacgaggt tagagactgt ttgcatttca caagtgtggg ccatgtgtat ttgatacccc
     4681 aaggaccagg atttggttaa acttcactgc agcaccacaa agtggagcct agatgcacag
     4741 agagacccct taaccagtat aatggtcctt cactgtaatt tgagcttgct agagatcaat
     4801 tgctggtgct ggcagagtgc aggctcagag caataagcaa gtatgagtgg accaatgact
     4861 ccaatcgaca accaaaaggt caaggcagtg gtaggcagac aactgcagcc acttcgggac
     4921 cctcccaact gtgtttaaac ggagagagca cctcagccag gggcgtagtt gtgttcctgt
     4981 gttccagtcc tctcatgttg ccaaatgcca ccctcaagtt tgttttccat acataaataa
     5041 gtaaaagagg agaaggagga ggaggaagag gaggaggagg aggaggagga ggaggaggag
     5101 gaggaggagg aggaggagga ggaggaggaa aacaaaactc ctttctgttt ttttctcgct
     5161 cagaaggtct tgctttgagg ttttgctcgg aggagcccat cacacctgca tgtcagaggt
     5221 tttctgttca tgggattttg tttttgtttt tgtttttttc taatgactgt attttcattt
     5281 gaattgcctc tttttgctag tgtaaaatta tgattaaata ataataataa tagtaataat
     5341 aataacagtc agctgttccc agattagtaa attatgtata atttatttta tttctcccta
     5401 ttttattctg ctttggattt ggaagctgtt aggtatttaa aactaatttc tatttctaac
     5461 tcatacacac atacacacat agacacacgt ctgtatgtgt acgtacacac aaatacttgc
     5521 ttctccaccc gtaacttgct ctgtgttaac agttttagcc ccggtagcat tggttctggt
     5581 atttcatatg aagcggtgaa ttaagaggaa tgtcatgttc aatcttaatt aacttatgct
     5641 ctttcctctc atcttagtta tttaattacc aattatctag agccagtttt tgtttttgtt
     5701 tgttttgttt cgaaacactc tgaataagaa aaaaaagaca cttgttttta tacaattata
     5761 acgcatacaa tgtgaaaaca gatttattaa aaaaaaaaag tttctctgcg tcttaacaaa
     5821 tttctcctga ctgatgtggg ttctccactc tcatgtgctg ggtccctgtc tcacagcaca
     5881 ttcgagacaa gcttggtttt catttcctga ccttgggcaa caagaacact ttgttttagc
     5941 tccaggtaga tgctgctgac aggcatccaa ggccaaaaca gcagtgaatc agagcaaact
     6001 cactctctgg tttgcttttg atttatttga gggaaactga aactgtgcat ggtaacctgt
     6061 agctgctgaa actctccagt tgagttgagt ttatgttcat aactgaactg tgcccagaca
     6121 aaaccacaaa gcaagcccat aatgacatgc cattctctgt ctggacattt tcttcagcac
     6181 atgttggctc tgctttgccc aagagttttc cctaggggac aacaacagca aaggtaattc
     6241 tactcatggc taaagtacac ataggtcact tgggggaaag ctgctgtaaa tagcgactta
     6301 acgataacaa cacaatgccc ttgctccatt ggttaggtga tgcttttagg tagaggatct
     6361 gatagcttta cattcgttct atggcacgca gaggccaagt aagatatggc agaggacata
     6421 acataaagtg gaaagatgaa agttagcagt caacagccct ccccccttcc ctctcctcag
     6481 cttataggtt taagtcatgc ccatctgtct ttctaccgct tccccatctt ccctttcaca
     6541 cacatttata ccaaaactga agagtaatat tgataatttc ttcgttttta catttgttat
     6601 gggaacctct aaagctagtc acatttgata taaatctaag aaaaatattc agagaagaaa
     6661 atgggttaaa gccctttgta agtcaatgat aatttggcta gttattacaa acaggagaaa
     6721 aattacacac acttcagtgt aattttaccc aaagtagtca agtgaactct gaaagttcat
     6781 ttgcttctag ctaagaacta cctttgtgta aaacccctcc cagtgaacat acgtatcatg
     6841 gttggaacca aatcttccca tggggtatga atatgaaagc attaagtgtt ctatgatgaa
     6901 gccacttcat atgtttgatt tctaaagtac aatctacctt agtttgcttg aaggagatta
     6961 tctttcccat tccgtggtgt gctttcagac atttccataa tgcagaagct gaccgtgtcc
     7021 tcagaggcat cccttctgtc tcacgtaaaa acacaaggaa taaactatac catccttact
     7081 ctaaagggta aactattgaa ttgtaataac tgtatattta caaacaggtt tataaaaata
     7141 tttgtctatc aaattaatag tgaaataaaa ctttatgagg tttgcaagga agaaatacga
     7201 aagctactta aagtggctga tctatttcat tgcctcttag ggcagagaca tttctgtagc
     7261 caggttgaca cagtatttaa ttgtgcagtc ccacaggttg aaggtgacat gctgacgggt
     7321 ccctgtcctc cccaagtgtc tgtcactggc ccactaaagg cagtatttat tcagctcccc
     7381 tggctctaaa gcacttagtc cttctaacag tgcggatttc acaagtgaaa aagttttgtt
     7441 tgtttgtttt tttgttttat ttgtttttta ctgatttaaa aaaaatagaa aaagagacaa
     7501 tcaatgcctg gagcttaaaa caaagtctgt gcaaactacc atctcacttg aaatttaata
     7561 aaataagaaa ttgtgtaaat ataacataga gttatagatt tctattttgt tcataacata
     7621 gtgtaatata agttgtatat tttcatgttt ttgggtttta tgttatcatt catgccacaa
     7681 taagaataaa acaggagttt gtgtactctt gggaaaaaga aaaagaaaaa aaaaagatgt
     7741 gggtccccgc cagcctgttt tttgcttttc tgttctcgtt ttcagtttgt tttgtttgtt
     7801 ttggccttcc ccctttcagt attactgccg tgcaaggcac caataaaaca gcaaatgtgt
     7861 tctttatcta tta
//
