LOCUS       NM_011439               3547 bp    mRNA    linear   ROD 13-SEP-2022
DEFINITION  Mus musculus SRY (sex determining region Y)-box 13 (Sox13), mRNA.
ACCESSION   NM_011439 XM_622870
VERSION     NM_011439.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3547)
  AUTHORS   Xiao Z, Liu S, Li Z, Cui J, Wang H, Wang Z, Ren Q, Xia L, Wang Z
            and Li Y.
  TITLE     The Maternal Microbiome Programs the m(6)A Epitranscriptome of the
            Mouse Fetal Brain and Intestine
  JOURNAL   Front Cell Dev Biol 10, 882994 (2022)
   PUBMED   35874829
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3547)
  AUTHORS   Ittner E, Hartwig AC, Elsesser O, Wust HM, Frob F, Wedel M,
            Schimmel M, Tamm ER, Wegner M and Sock E.
  TITLE     SoxD transcription factor deficiency in Schwann cells delays
            myelination in the developing peripheral nervous system
  JOURNAL   Sci Rep 11 (1), 14044 (2021)
   PUBMED   34234180
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 3547)
  AUTHORS   Sagar, Pokrovskii M, Herman JS, Naik S, Sock E, Zeis P, Lausch U,
            Wegner M, Tanriver Y, Littman DR and Grun D.
  TITLE     Deciphering the regulatory landscape of fetal and adult gammadelta
            T-cell development at single-cell resolution
  JOURNAL   EMBO J 39 (13), e104159 (2020)
   PUBMED   32627520
REFERENCE   4  (bases 1 to 3547)
  AUTHORS   Spidale NA, Malhotra N, Frascoli M, Sylvia K, Miu B, Freeman C,
            Stadinski BD, Huseby E and Kang J.
  TITLE     Neonatal-derived IL-17 producing dermal gammadelta T cells are
            required to prevent spontaneous atopic dermatitis
  JOURNAL   Elife 9, e51188 (2020)
   PUBMED   32065580
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 3547)
  AUTHORS   Planells B, Gomez-Redondo I, Pericuesta E, Lonergan P and
            Gutierrez-Adan A.
  TITLE     Differential isoform expression and alternative splicing in sex
            determination in mice
  JOURNAL   BMC Genomics 20 (1), 202 (2019)
   PUBMED   30871468
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 3547)
  AUTHORS   Kido S, Hiraoka Y, Ogawa M, Sakai Y, Yoshimura Y and Aiso S.
  TITLE     Cloning and characterization of mouse mSox13 cDNA
  JOURNAL   Gene 208 (2), 201-206 (1998)
   PUBMED   9524265
REFERENCE   7  (bases 1 to 3547)
  AUTHORS   Roose J, Korver W, Oving E, Wilson A, Wagenaar G, Markman M, Lamers
            W and Clevers H.
  TITLE     High expression of the HMG box factor sox-13 in arterial walls
            during embryonic development
  JOURNAL   Nucleic Acids Res 26 (2), 469-476 (1998)
   PUBMED   9421502
REFERENCE   8  (bases 1 to 3547)
  AUTHORS   Stock DW, Buchanan AV, Zhao Z and Weiss KM.
  TITLE     Numerous members of the Sox family of HMG box-containing genes are
            expressed in developing mouse teeth
  JOURNAL   Genomics 37 (2), 234-237 (1996)
   PUBMED   8921394
REFERENCE   9  (bases 1 to 3547)
  AUTHORS   Yuan H, Corbi N, Basilico C and Dailey L.
  TITLE     Developmental-specific activity of the FGF-4 enhancer requires the
            synergistic action of Sox2 and Oct-3
  JOURNAL   Genes Dev 9 (21), 2635-2645 (1995)
   PUBMED   7590241
REFERENCE   10 (bases 1 to 3547)
  AUTHORS   Wright EM, Snopek B and Koopman P.
  TITLE     Seven new members of the Sox gene family expressed during mouse
            development
  JOURNAL   Nucleic Acids Res 21 (3), 744 (1993)
   PUBMED   8441686
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BE949927.1, AB006329.1 and BE984765.1.
            
            [WARNING] On May 9, 2023 this sequence was replaced by NM_011439.3.
            
            On Dec 9, 2006 this sequence version replaced NM_011439.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC007130.1, SRR13422600.511827.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-481               BE949927.1         1-481
            482-3527            AB006329.1         138-3183
            3528-3547           BE984765.1         1-20                c
FEATURES             Location/Qualifiers
     source          1..3547
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1"
     gene            1..3547
                     /gene="Sox13"
                     /gene_synonym="Sox-13"
                     /note="SRY (sex determining region Y)-box 13"
                     /db_xref="GeneID:20668"
                     /db_xref="MGI:MGI:98361"
     exon            1..337
                     /gene="Sox13"
                     /gene_synonym="Sox-13"
                     /inference="alignment:Splign:2.1.0"
     exon            338..536
                     /gene="Sox13"
                     /gene_synonym="Sox-13"
                     /inference="alignment:Splign:2.1.0"
     exon            537..648
                     /gene="Sox13"
                     /gene_synonym="Sox-13"
                     /inference="alignment:Splign:2.1.0"
     exon            649..735
                     /gene="Sox13"
                     /gene_synonym="Sox-13"
                     /inference="alignment:Splign:2.1.0"
     exon            736..908
                     /gene="Sox13"
                     /gene_synonym="Sox-13"
                     /inference="alignment:Splign:2.1.0"
     exon            909..977
                     /gene="Sox13"
                     /gene_synonym="Sox-13"
                     /inference="alignment:Splign:2.1.0"
     exon            978..1092
                     /gene="Sox13"
                     /gene_synonym="Sox-13"
                     /inference="alignment:Splign:2.1.0"
     exon            1093..1175
                     /gene="Sox13"
                     /gene_synonym="Sox-13"
                     /inference="alignment:Splign:2.1.0"
     exon            1176..1338
                     /gene="Sox13"
                     /gene_synonym="Sox-13"
                     /inference="alignment:Splign:2.1.0"
     exon            1339..1448
                     /gene="Sox13"
                     /gene_synonym="Sox-13"
                     /inference="alignment:Splign:2.1.0"
     exon            1449..1545
                     /gene="Sox13"
                     /gene_synonym="Sox-13"
                     /inference="alignment:Splign:2.1.0"
     exon            1546..1689
                     /gene="Sox13"
                     /gene_synonym="Sox-13"
                     /inference="alignment:Splign:2.1.0"
     exon            1690..1906
                     /gene="Sox13"
                     /gene_synonym="Sox-13"
                     /inference="alignment:Splign:2.1.0"
     exon            1907..3531
                     /gene="Sox13"
                     /gene_synonym="Sox-13"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3509..3514
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Sox13"
                     /gene_synonym="Sox-13"
ORIGIN      
        1 cggccgcgag tccgggagcc ggactgcgga agggaacacg gcggcggcca gccgggggca
       61 gagggcagag tgccgagcgg cctggctcgg aggagggcgc cgcccgaccc gtcctcagct
      121 cggcgaccgt ggccagcgga gcccggcggg ccgcgggtcc tgagcgcttc cagcccacgg
      181 cggggggcgt gcctccgccc ggccgcgccg ccccggcccg ctgcccgccg cgttgccggg
      241 gcatgtgagc gggaaggcca ggctgctggc tgccgggacg cactgagcag aagccggagc
      301 gcggagttgc gaccccgggc ccgcgcccga ccgattagat gtccatgcag agccccgtct
      361 ctgtgcagct ggccccagac agcgctagca ccatggtgaa ctgcaccatc aagtctgagg
      421 agaagaagga gccttgccac gaggctcccc aaggtgcagc ccctgcagtg gagacccagc
      481 ctggagaccc ggccctggcc tctcaggatg ccaccaacgc taaagctcct cctcaggact
      541 gtgcctcacc agagagcagt gggtccccag aacccaagag accagcagct tccgaggctg
      601 cttcgggaag ccaggagcgc ctggacttca accgcaactt acaggaggtt gtgccagcca
      661 ttgagaagct gctgtccagt gactggaagg agaggtttct gggaagaagc aatgtggaag
      721 ctaaggatgt caaagggacc caagagagcc tggctgagaa ggaactccag cttttggtca
      781 tgatccatca gctctctgcc cttcgggacc agctccttac ggcccactct gagcagaaga
      841 acatggccgc catgctgttt gagaagcagc agcaacagat ggaactggcc aggcagcagc
      901 aggagcagat cgccaagcag cagcagcagc tgattcaaca gcagcacaag atcaacctcc
      961 tgcagcagca gatccagcag gttaacatgc cttacgtcat gatcccagcc ttccccccaa
     1021 gccaccagcc tttgcctgtc actcctgact cccagctggc tttacctatt cagcccattc
     1081 cctgcaagcc agtggaatac ccactgcagc tgctgcacag cccgcctgcc cctgtggtga
     1141 agaggtcggg ggtggccgcc caccaccccc tgcaggagcc cccacaacca ctgaacctca
     1201 cagccaagcc caaggtacct gagctgccca acacctccag ctctcccagc ctgaagatga
     1261 acagttgtgg gcctcgcccc gccagccatg gggctcccac aagggacctg caatccagcc
     1321 cccccagcct gcctctgggc ttcctcggtg aaggggacgc cgtcaccaaa gccatccagg
     1381 atgcccggca gctgctgcac agccacagtg gggctttgga aaactccccc aataccccat
     1441 tccggaagga cctcatcagc ctggactcct ccccggccaa ggagcggctg gaggagagct
     1501 gtgtgcatcc cctggaggaa gccatgctga gctgtgacat ggatggctcc cgtcattttt
     1561 ccgagtctcg gaacagcagc cacatcaaga gacccatgaa tgccttcatg gtgtgggcca
     1621 aggatgaacg gaggaaaatt ctccaggcct tcccagacat gcataactcc agcatcagca
     1681 agatccttgg ttctcgctgg aagtccatga ccaaccagga gaaacagccg tactacgagg
     1741 agcaggcccg tctgagccgg cagcacctgg agaaataccc tgactataag tacaagccaa
     1801 ggcctaagcg tacctgtgtc gtggagggcc ggcggctgcg agtgggcgag tacaaggcct
     1861 tgatgaggac acggcgccag ggtgctcgcc aaagctacac catccccccg caggctggcc
     1921 aggcacaggt gagctcagat atcctgttcc ctcgggcagc gggcttgccc ctggcacgtc
     1981 cactggtgga gcactatgac ccccagggcc tggaccccaa catgcctgtc atcatcaata
     2041 cctgcagtct ccgggaggaa ggggagggca cagatgacag gcactcggtg gccgatggag
     2101 agatgtaccg gtacagcgag gacgaggact cagagggtga cgagaagagt gatgaggagc
     2161 tggtggtact cacagactga tccccagctc gctgggcccg gcccgtcacc gctgggggaa
     2221 agaccttgtt cccatccgga caggcacagc cagccttcct gaactatctt ggtacttgga
     2281 cttgggtgtg gccaggtgat gggtgaaact gcacttgtag atacattccc aagatggggg
     2341 tcctcctctt catcacacct ctgggcccat cggaggagcc aatggcctgg ctgggtggga
     2401 gtcatgtggc cgtggtggac aaagcttgct gagggtttta gcccttgggg acaatggcca
     2461 gggaccactg gatgtacttc ctcctgtctg cccacccact caaggggatg acagggacac
     2521 acctgccccc ctgaggtcac atgctttgtt tccatttctt cttggtccag accagccatt
     2581 gtgggacaac acacctgccc tacaagctcc caggtcaccc ctctgccacc tgggttactt
     2641 tgaactctgc agtctggctg tgctgtcttt tgtcttccaa gtccatgtgc ctctggctac
     2701 tgtgtgtctg tgcgcggccc acacatgttc atcacgccac tcttggcaga aggcatttgc
     2761 tgagtgtcac tgtgagccag gcacgcccgt gagctctgtg atgtgtgtct tgatgcttct
     2821 ctgggggctg cttctgtgtt cctttgtccc cacattgcta cctctttgtc agtctggtgt
     2881 ctcaggttct gcgtattttc tccccatgta cacttctccc tcttcctcct ccgtctgtcc
     2941 ctgtcccacc acacccgctg tatcctctgg gtgtttgtag ggcccagcct gcccctggga
     3001 ctggcagttc ctgaccccca tgaccccttc cctcccttca gactctgcca gtcagttccc
     3061 acggagccat ttttagctcc cagggccgtg agagccagcc caggcctcca agggggctct
     3121 gccctgattc ccaacgtgtg tgccgcagtc atgaggatct ttttctcagt gacagccctg
     3181 cagaggggac cccatggcag ctggtctcca tcccttcttc atgagcttag ggtggcttct
     3241 tccctccccc ccccctttcc tcctaaatta gcttcctggt tgtatcccaa ggaaatcatt
     3301 agcacctagt caaagatctg gagctgccct ggggcaggga aagaccccaa accccacaag
     3361 gccaggtgct tccctcccca ccgctgttga ccctatttct ctccagactg tttcttttta
     3421 tgactgtaaa catagatagt gctttatttt gttactaaga agataatgat gaataactta
     3481 accagcatat ttgttttctg atgggtgtaa taaagaccga ccatttcagg aaaaaaaaaa
     3541 aaaaaaa
//
