LOCUS       XM_036165098            2679 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus sorting nexin 8 (Snx8), transcript variant
            X7, mRNA.
ACCESSION   XM_036165098
VERSION     XM_036165098.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000071.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2679
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="5"
     gene            1..2679
                     /gene="Snx8"
                     /gene_synonym="B130023O14Rik"
                     /note="sorting nexin 8; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 39 ESTs, 294 long
                     SRA reads, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 31 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:231834"
                     /db_xref="MGI:MGI:2443816"
     CDS             645..1448
                     /gene="Snx8"
                     /gene_synonym="B130023O14Rik"
                     /codon_start=1
                     /product="sorting nexin-8 isoform X6"
                     /protein_id="XP_036020991.1"
                     /db_xref="GeneID:231834"
                     /db_xref="MGI:MGI:2443816"
                     /translation="MNCKLAARAKDFLPADIQTQFAMSRELIRNVYNSFYKLRDRAER
                     IASRAIDNAADLLIFGKELSALGSDTTPLPSWAALHLSTWGSLKQALKGLSVEFALLA
                     DRAAQQGKKEENDVVEKLNLFLDLLQSYKDLCERHEKGVLHKHQRALHKYGLMKRQMM
                     SAAHGREPESVEQLESRIVEQENVIQTMELRNYFSLYCLHQETQLVHVYLPLTSHILG
                     AFVNSQIQGHKEMSKVWNDLKPKLSCLFAGPHSVLTPPRSPQEDGVCPH"
ORIGIN      
        1 ggccgcgcga tggacccgct gccctcgccg gcagtcgctg cagctgctga ggcggaggct
       61 gacgaggagg cggatccgcc ggcgacaggc ccacgaacat cccaggtcac tgagtggagg
      121 gccctggacc ccgggcgaat gcagatgccg caggggaacc cactgctgct gtcctacacc
      181 ctgcaggagc tgctggccaa ggacacggtg caggtggagc tcatccctga gaagaagggc
      241 ctcttcctta agcatgtgga gtacgaggtt tccagccagc gcttcaagtc ctccgtgtac
      301 agacgctaca atgacttcgt ggtcttccat gaagtgctgc ttcacaagtt cccgtaccgc
      361 atggttccag ctcttccgcc caagagagtg ctgggagcct cttagctgct tggaagcctg
      421 ctctgagtgg gggctcggct gcctgcgtgg tgaccctgta ctgtcctcca gccgacaggg
      481 agttcatcga gggccgccgg agggccctga agcgcttcat caacctggtg gcccggcacc
      541 cacccttctc tgaggacgtg ctccttaaac tcttcctctc cttcagtggc tcggatgttc
      601 agcacaagct caaggaggcg gcccagtgcg tgggagatga gttcatgaac tgtaagctgg
      661 ctgctagggc caaggacttc ctcccagctg acatccagac tcaatttgcc atgagccggg
      721 agctgattcg aaatgtctac aacagcttct acaagcttcg agacagagcc gagcggattg
      781 cgtcccgggc cattgacaac gctgctgatc ttctcatatt tggaaaggag cttagtgctt
      841 tgggctccga caccacccct ctgccctcct gggctgctct gcacctcagc acatggggct
      901 ccctgaagca agcgctcaag ggcctctccg tggagtttgc actgctggcg gacagagctg
      961 cacagcaggg caagaaggag gagaatgatg tagtggagaa gctgaacctc ttcttggatt
     1021 tgttgcagtc ctacaaagac ctgtgtgagc ggcacgagaa gggcgtgctt cacaaacacc
     1081 agcgggcact gcacaagtac ggcctgatga agaggcagat gatgagtgca gcgcacggcc
     1141 gagaacctga gtctgtggag cagctggagt cacgaatcgt ggagcaggag aacgtgatcc
     1201 agactatgga actccgaaac tacttctccc tctactgcct gcaccaggag acgcagctcg
     1261 tccacgtcta cctgcctctc acctcgcaca tcctgggggc cttcgtgaac tcccagatcc
     1321 aagggcacaa ggagatgagc aaggtgtgga atgacctgaa gccgaagctg agctgcctct
     1381 tcgctggacc tcacagtgtg ttgacgccac cgcgctcccc gcaggaggat ggcgtgtgtc
     1441 cccactagtg gcaagaccca cgacagagct cccggtggcc tcactaaaac ctcttttcaa
     1501 acagtgtgtt cctggctgat tccctccagg cagcagccgt tcccctgagc tgcctgtggg
     1561 ctgccggcgg tctttgtgtc tccctgttct tgttgtagga ggtctttgtg cccccagtct
     1621 gccccttggc ctgttgatca ggtcggtagt gggaagttag ggtgctttgg actggattgt
     1681 gcccggtgcc cgcagtgtta agggcctttt gtacccagta agtggtttct aggggagcct
     1741 aggggttcac ctagcagcaa agggatggga ggactggcct gtcctgtggc ctggcaaaga
     1801 gctggtcaat ctctcagagt gggcagtgac tctagccttg ggcctacaga cattctggga
     1861 ggagcatttg aagccaggcg gaggtctgat gcaaggggga ggtgagtgtg cagtgcttgg
     1921 agctttggag gacatctttc acttcagtgc gatccttgga gctctggtcc agggcctgtc
     1981 aaggtccaca gtggatgaag gctcagggtc tttttgtgtt gggtttggag ggtgggagtg
     2041 aggaggggtt gtggggaagc actggaggtg ggcatccctg ttgggtgccc aggcctcagg
     2101 ctgtcaggcc gcaggctcca cctggatgtg agccgtttcc tttaccagcc cgctcaccag
     2161 cctctgtgct ctagtgctct gggtccccca cgcctgcaat agagcctgcc ttttctcaca
     2221 tagtctttcc ctgactggac tgtgggtgcc tgactccaaa cttgaggttc cactcctagg
     2281 gttcagagga accaagggtc cccctaccct tctgggtatc gtgctgtctg agcctgtgtt
     2341 gtgccccagc cacgcttggg gctgccagaa agacagagaa gcacaagagg caccggatct
     2401 cccgcctgct tgtccctttc cctggcctga gtggggccca gcggtagcct taactggaca
     2461 gtcctggggc catcagagtg ggagtgaagg gaaggggttt tttttggtgc tccctacttg
     2521 gtgttagcca ccctggttga agaagctaga cagggcagtg ggtctctggg ctaagggagt
     2581 caagctggtg ctatgggatt cggctcgatg aatgaagcac tttatggact gcggggatca
     2641 gttactgcca cacccaataa actggaagtg tttacagat
//
