LOCUS       XM_030254436            2566 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus sorting nexin 8 (Snx8), transcript variant
            X3, mRNA.
ACCESSION   XM_030254436
VERSION     XM_030254436.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000071.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_030254436.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2566
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="5"
     gene            1..2566
                     /gene="Snx8"
                     /gene_synonym="B130023O14Rik"
                     /note="sorting nexin 8; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 39 ESTs, 313 long
                     SRA reads, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 33 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:231834"
                     /db_xref="MGI:MGI:2443816"
     CDS             37..1335
                     /gene="Snx8"
                     /gene_synonym="B130023O14Rik"
                     /codon_start=1
                     /product="sorting nexin-8 isoform X3"
                     /protein_id="XP_030110296.1"
                     /db_xref="GeneID:231834"
                     /db_xref="MGI:MGI:2443816"
                     /translation="MTGRAMDPLPSPAVAAAAEAEADEEADPPATGPRTSQVTEWRAL
                     DPGRMQMPQGNPLLLSYTLQELLAKDTVQVELIPEKKGLFLKHVEYEVSSQRFKSSVY
                     RRYNDFVVFHEVLLHKFPYRMVPALPPKRVLGADREFIEGRRRALKRFINLVARHPPF
                     SEDVLLKLFLSFSGSDFLPADIQTQFAMSRELIRNVYNSFYKLRDRAERIASRAIDNA
                     ADLLIFGKELSALGSDTTPLPSWAALHLSTWGSLKQALKGLSVEFALLADRAAQQGKK
                     EENDVVEKLNLFLDLLQSYKDLCERHEKGVLHKHQRALHKYGLMKRQMMSAAHGREPE
                     SVEQLESRIVEQENVIQTMELRNYFSLYCLHQETQLVHVYLPLTSHILGAFVNSQIQG
                     HKEMSKVWNDLKPKLSCLFAGPHSVLTPPRSPQEDGVCPH"
ORIGIN      
        1 ggcgcgggag gaagtcacgt gggcgagcgg gctcacatga ctggccgcgc gatggacccg
       61 ctgccctcgc cggcagtcgc tgcagctgct gaggcggagg ctgacgagga ggcggatccg
      121 ccggcgacag gcccacgaac atcccaggtc actgagtgga gggccctgga ccccgggcga
      181 atgcagatgc cgcaggggaa cccactgctg ctgtcctaca ccctgcagga gctgctggcc
      241 aaggacacgg tgcaggtgga gctcatccct gagaagaagg gcctcttcct taagcatgtg
      301 gagtacgagg tttccagcca gcgcttcaag tcctccgtgt acagacgcta caatgacttc
      361 gtggtcttcc atgaagtgct gcttcacaag ttcccgtacc gcatggttcc agctcttccg
      421 cccaagagag tgctgggagc cgacagggag ttcatcgagg gccgccggag ggccctgaag
      481 cgcttcatca acctggtggc ccggcaccca cccttctctg aggacgtgct ccttaaactc
      541 ttcctctcct tcagtggctc ggacttcctc ccagctgaca tccagactca atttgccatg
      601 agccgggagc tgattcgaaa tgtctacaac agcttctaca agcttcgaga cagagccgag
      661 cggattgcgt cccgggccat tgacaacgct gctgatcttc tcatatttgg aaaggagctt
      721 agtgctttgg gctccgacac cacccctctg ccctcctggg ctgctctgca cctcagcaca
      781 tggggctccc tgaagcaagc gctcaagggc ctctccgtgg agtttgcact gctggcggac
      841 agagctgcac agcagggcaa gaaggaggag aatgatgtag tggagaagct gaacctcttc
      901 ttggatttgt tgcagtccta caaagacctg tgtgagcggc acgagaaggg cgtgcttcac
      961 aaacaccagc gggcactgca caagtacggc ctgatgaaga ggcagatgat gagtgcagcg
     1021 cacggccgag aacctgagtc tgtggagcag ctggagtcac gaatcgtgga gcaggagaac
     1081 gtgatccaga ctatggaact ccgaaactac ttctccctct actgcctgca ccaggagacg
     1141 cagctcgtcc acgtctacct gcctctcacc tcgcacatcc tgggggcctt cgtgaactcc
     1201 cagatccaag ggcacaagga gatgagcaag gtgtggaatg acctgaagcc gaagctgagc
     1261 tgcctcttcg ctggacctca cagtgtgttg acgccaccgc gctccccgca ggaggatggc
     1321 gtgtgtcccc actagtggca agacccacga cagagctccc ggtggcctca ctaaaacctc
     1381 ttttcaaaca gtgtgttcct ggctgattcc ctccaggcag cagccgttcc cctgagctgc
     1441 ctgtgggctg ccggcggtct ttgtgtctcc ctgttcttgt tgtaggaggt ctttgtgccc
     1501 ccagtctgcc ccttggcctg ttgatcaggt cggtagtggg aagttagggt gctttggact
     1561 ggattgtgcc cggtgcccgc agtgttaagg gccttttgta cccagtaagt ggtttctagg
     1621 ggagcctagg ggttcaccta gcagcaaagg gatgggagga ctggcctgtc ctgtggcctg
     1681 gcaaagagct ggtcaatctc tcagagtggg cagtgactct agccttgggc ctacagacat
     1741 tctgggagga gcatttgaag ccaggcggag gtctgatgca agggggaggt gagtgtgcag
     1801 tgcttggagc tttggaggac atctttcact tcagtgcgat ccttggagct ctggtccagg
     1861 gcctgtcaag gtccacagtg gatgaaggct cagggtcttt ttgtgttggg tttggagggt
     1921 gggagtgagg aggggttgtg gggaagcact ggaggtgggc atccctgttg ggtgcccagg
     1981 cctcaggctg tcaggccgca ggctccacct ggatgtgagc cgtttccttt accagcccgc
     2041 tcaccagcct ctgtgctcta gtgctctggg tcccccacgc ctgcaataga gcctgccttt
     2101 tctcacatag tctttccctg actggactgt gggtgcctga ctccaaactt gaggttccac
     2161 tcctagggtt cagaggaacc aagggtcccc ctacccttct gggtatcgtg ctgtctgagc
     2221 ctgtgttgtg ccccagccac gcttggggct gccagaaaga cagagaagca caagaggcac
     2281 cggatctccc gcctgcttgt ccctttccct ggcctgagtg gggcccagcg gtagccttaa
     2341 ctggacagtc ctggggccat cagagtggga gtgaagggaa ggggtttttt ttggtgctcc
     2401 ctacttggtg ttagccaccc tggttgaaga agctagacag ggcagtgggt ctctgggcta
     2461 agggagtcaa gctggtgcta tgggattcgg ctcgatgaat gaagcacttt atggactgcg
     2521 gggatcagtt actgccacac ccaataaact ggaagtgttt acagat
//
