LOCUS       NM_001403235            2655 bp    mRNA    linear   ROD 12-JUN-2024
DEFINITION  Mus musculus sorting nexin 29 (Snx29), transcript variant 3, mRNA.
ACCESSION   NM_001403235 XM_006522666
VERSION     NM_001403235.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2655)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2655)
  AUTHORS   Dickinson,M.E., Flenniken,A.M., Ji,X., Teboul,L., Wong,M.D.,
            White,J.K., Meehan,T.F., Weninger,W.J., Westerberg,H., Adissu,H.,
            Baker,C.N., Bower,L., Brown,J.M., Caddle,L.B., Chiani,F., Clary,D.,
            Cleak,J., Daly,M.J., Denegre,J.M., Doe,B., Dolan,M.E., Edie,S.M.,
            Fuchs,H., Gailus-Durner,V., Galli,A., Gambadoro,A., Gallegos,J.,
            Guo,S., Horner,N.R., Hsu,C.W., Johnson,S.J., Kalaga,S., Keith,L.C.,
            Lanoue,L., Lawson,T.N., Lek,M., Mark,M., Marschall,S., Mason,J.,
            McElwee,M.L., Newbigging,S., Nutter,L.M., Peterson,K.A.,
            Ramirez-Solis,R., Rowland,D.J., Ryder,E., Samocha,K.E.,
            Seavitt,J.R., Selloum,M., Szoke-Kovacs,Z., Tamura,M., Trainor,A.G.,
            Tudose,I., Wakana,S., Warren,J., Wendling,O., West,D.B., Wong,L.,
            Yoshiki,A., MacArthur,D.G., Tocchini-Valentini,G.P., Gao,X.,
            Flicek,P., Bradley,A., Skarnes,W.C., Justice,M.J., Parkinson,H.E.,
            Moore,M., Wells,S., Braun,R.E., Svenson,K.L., de Angelis,M.H.,
            Herault,Y., Mohun,T., Mallon,A.M., Henkelman,R.M., Brown,S.D.,
            Adams,D.J., Lloyd,K.C., McKerlie,C., Beaudet,A.L., Bucan,M. and
            Murray,S.A.
  CONSRTM   International Mouse Phenotyping Consortium; Jackson Laboratory;
            Infrastructure Nationale PHENOMIN, Institut Clinique de la Souris
            (ICS); Charles River Laboratories; MRC Harwell; Toronto Centre for
            Phenogenomics; Wellcome Trust Sanger Institute; RIKEN BioResource
            Center
  TITLE     High-throughput discovery of novel developmental phenotypes
  JOURNAL   Nature 537 (7621), 508-514 (2016)
   PUBMED   27626380
  REMARK    Erratum:[Nature. 2017 Nov 16;551(7680):398. doi:
            10.1038/nature24643. PMID: 29144450]
REFERENCE   3  (bases 1 to 2655)
  AUTHORS   Seet,L.F. and Hong,W.
  TITLE     The Phox (PX) domain proteins and membrane traffic
  JOURNAL   Biochim Biophys Acta 1761 (8), 878-896 (2006)
   PUBMED   16782399
  REMARK    Review article
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC165252.2, AC167720.2, AC154233.3 and AC154509.2.
            
            On Mar 29, 2022 this sequence version replaced XM_006522666.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR17784646.152661.1,
                                           SRR17784643.62920.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849381
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-55                AC165252.2         122062-122116       c
            56-117              AC165252.2         97120-97181         c
            118-170             AC165252.2         95082-95134         c
            171-295             AC165252.2         77239-77363         c
            296-476             AC165252.2         49641-49821         c
            477-547             AC165252.2         45205-45275         c
            548-796             AC165252.2         43991-44239         c
            797-1169            AC165252.2         41208-41580         c
            1170-1300           AC165252.2         31684-31814         c
            1301-1376           AC165252.2         26142-26217         c
            1377-1459           AC165252.2         24257-24339         c
            1460-1523           AC167720.2         42616-42679
            1524-1652           AC167720.2         44831-44959
            1653-1735           AC167720.2         108411-108493
            1736-1842           AC167720.2         169150-169256
            1843-1959           AC154233.3         75388-75504
            1960-2015           AC154233.3         100066-100121
            2016-2097           AC154233.3         104476-104557
            2098-2238           AC154233.3         158844-158984
            2239-2378           AC154509.2         59774-59913
            2379-2655           AC154509.2         76677-76953
FEATURES             Location/Qualifiers
     source          1..2655
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="16"
                     /map="16 6.46 cM"
     gene            1..2655
                     /gene="Snx29"
                     /gene_synonym="4933437K13Rik; Gm11170; Gm1737; Gm930;
                     Rundc2a"
                     /note="sorting nexin 29"
                     /db_xref="GeneID:74478"
                     /db_xref="MGI:MGI:1921728"
     exon            1..55
                     /gene="Snx29"
                     /gene_synonym="4933437K13Rik; Gm11170; Gm1737; Gm930;
                     Rundc2a"
                     /inference="alignment:Splign:2.1.0"
     exon            56..117
                     /gene="Snx29"
                     /gene_synonym="4933437K13Rik; Gm11170; Gm1737; Gm930;
                     Rundc2a"
                     /inference="alignment:Splign:2.1.0"
     exon            118..170
                     /gene="Snx29"
                     /gene_synonym="4933437K13Rik; Gm11170; Gm1737; Gm930;
                     Rundc2a"
                     /inference="alignment:Splign:2.1.0"
     exon            171..295
                     /gene="Snx29"
                     /gene_synonym="4933437K13Rik; Gm11170; Gm1737; Gm930;
                     Rundc2a"
                     /inference="alignment:Splign:2.1.0"
     exon            296..476
                     /gene="Snx29"
                     /gene_synonym="4933437K13Rik; Gm11170; Gm1737; Gm930;
                     Rundc2a"
                     /inference="alignment:Splign:2.1.0"
     exon            477..547
                     /gene="Snx29"
                     /gene_synonym="4933437K13Rik; Gm11170; Gm1737; Gm930;
                     Rundc2a"
                     /inference="alignment:Splign:2.1.0"
     exon            548..796
                     /gene="Snx29"
                     /gene_synonym="4933437K13Rik; Gm11170; Gm1737; Gm930;
                     Rundc2a"
                     /inference="alignment:Splign:2.1.0"
     exon            797..1169
                     /gene="Snx29"
                     /gene_synonym="4933437K13Rik; Gm11170; Gm1737; Gm930;
                     Rundc2a"
                     /inference="alignment:Splign:2.1.0"
     exon            1170..1300
                     /gene="Snx29"
                     /gene_synonym="4933437K13Rik; Gm11170; Gm1737; Gm930;
                     Rundc2a"
                     /inference="alignment:Splign:2.1.0"
     exon            1301..1376
                     /gene="Snx29"
                     /gene_synonym="4933437K13Rik; Gm11170; Gm1737; Gm930;
                     Rundc2a"
                     /inference="alignment:Splign:2.1.0"
     exon            1377..1459
                     /gene="Snx29"
                     /gene_synonym="4933437K13Rik; Gm11170; Gm1737; Gm930;
                     Rundc2a"
                     /inference="alignment:Splign:2.1.0"
     exon            1460..1523
                     /gene="Snx29"
                     /gene_synonym="4933437K13Rik; Gm11170; Gm1737; Gm930;
                     Rundc2a"
                     /inference="alignment:Splign:2.1.0"
     exon            1524..1652
                     /gene="Snx29"
                     /gene_synonym="4933437K13Rik; Gm11170; Gm1737; Gm930;
                     Rundc2a"
                     /inference="alignment:Splign:2.1.0"
     exon            1653..1735
                     /gene="Snx29"
                     /gene_synonym="4933437K13Rik; Gm11170; Gm1737; Gm930;
                     Rundc2a"
                     /inference="alignment:Splign:2.1.0"
     exon            1736..1842
                     /gene="Snx29"
                     /gene_synonym="4933437K13Rik; Gm11170; Gm1737; Gm930;
                     Rundc2a"
                     /inference="alignment:Splign:2.1.0"
     exon            1843..1959
                     /gene="Snx29"
                     /gene_synonym="4933437K13Rik; Gm11170; Gm1737; Gm930;
                     Rundc2a"
                     /inference="alignment:Splign:2.1.0"
     exon            1960..2015
                     /gene="Snx29"
                     /gene_synonym="4933437K13Rik; Gm11170; Gm1737; Gm930;
                     Rundc2a"
                     /inference="alignment:Splign:2.1.0"
     exon            2016..2097
                     /gene="Snx29"
                     /gene_synonym="4933437K13Rik; Gm11170; Gm1737; Gm930;
                     Rundc2a"
                     /inference="alignment:Splign:2.1.0"
     exon            2098..2238
                     /gene="Snx29"
                     /gene_synonym="4933437K13Rik; Gm11170; Gm1737; Gm930;
                     Rundc2a"
                     /inference="alignment:Splign:2.1.0"
     exon            2239..2378
                     /gene="Snx29"
                     /gene_synonym="4933437K13Rik; Gm11170; Gm1737; Gm930;
                     Rundc2a"
                     /inference="alignment:Splign:2.1.0"
     exon            2379..2655
                     /gene="Snx29"
                     /gene_synonym="4933437K13Rik; Gm11170; Gm1737; Gm930;
                     Rundc2a"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2637..2642
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Snx29"
                     /gene_synonym="4933437K13Rik; Gm11170; Gm1737; Gm930;
                     Rundc2a"
                     /note="hexamer: ATTAAA"
     polyA_site      2655
                     /gene="Snx29"
                     /gene_synonym="4933437K13Rik; Gm11170; Gm1737; Gm930;
                     Rundc2a"
                     /note="major polyA site"
ORIGIN      
        1 agacgcggcg gcggcggcaa ggcaggcggc ggccccggga gcagcaacat gagcgggtcg
       61 cagaatgatg acagaaggca attcctgctg gagcggctgc tggatgcagt gaagcagtgc
      121 cagatccgct ttggagggag aaaggagatc gcctcagatt ccgacagcag ggtgacctgt
      181 ctgtgtgccc agtttgaagc cgtccttcag catggcatga agaggagccg aggattagca
      241 ctcacggctg cagccatcaa acaggcagca ggcttcacca gcaagaccga aacagagccc
      301 gtgttctggg tctacgtgaa ggaggtcctc aataagcacg agctgcagcg cttctactcc
      361 ctgcaccaca tcacctccga tgctggccga ggccgggcct ggctgcgctg cgccctaaat
      421 gagcactccc tcgagcgcta cctgcacatg ctgctggctg accgtgccag gctcagcaca
      481 ttctatgaag attggtcttt tgtgatggat gaagaaaggt ccagcatgct ccctaccatg
      541 gcagctggtc tgaactccat actctttgca attaacattg acaataagga tttgaatggg
      601 cagagcaaat ttgctcccac tgtctctgac ctcttaaagg agtcaacgca gaatgtgaca
      661 tctttgctga aggagtccac acagggcatg agcagccttc tcagggagat cacagcatcc
      721 tctgctgtct ccattctcat caagccagag caggagactg accctctgcc tgtcatatcc
      781 aagaacgttc atgttgatac ccgatgtaaa agggagcgga gaaggaggaa gaaggtgacc
      841 aacattgtct cttttgatga tgatgaggag gagcagggta ctggggacac tttaaaaaag
      901 atgcctggga ctgcagaaag ctcggaggag aactctgacc gatcctccgt caacatcatg
      961 gcagcctttg aaggcacctt tgggccaaat tccaacggga gccagagcag cagctcatgg
     1021 aagattgatt ctgcgtcttt gaatggggag ctgggctacc agaagcttga tgtgaagagc
     1081 attgatgacg acgtggatga gaacgaggag gatgcgtaca ggagcccgct aggaaggggg
     1141 cacactggcc acgcggagtc gccagacagg acactggatg ggaacgcctg cctggcccag
     1201 gtccatggct gggctccact gcaggtgctt catggagatg cggatgctga cactgatgta
     1261 ctcttccctg tcagtggagt gggctcctat ggtgcagcag atgcccctgt gggaagtctg
     1321 gagaatggaa caggaacaga aaaccatata atcccagagc ctggccttcg gtacagtagg
     1381 gaagccagtt ctccaggcca aggaagtcct ctgagcagct tgctaccttc tgcctcagtg
     1441 cctgagtcca tgacagtcca tgaactgcgc caagccatcg tggccatgat gaacagaaag
     1501 gatgaattgg aagaagagaa tgggtcactg cggaatctcc ttgacggtga gatggagcac
     1561 tcagcagcgc tccggcaaga ggtggatgcc ctgaggcgga aggtgacaga acagcaggag
     1621 cgccatgcca caaaggtcca ggcactggcc agagaaaacg aggtgctcaa agtccagctg
     1681 aagaaatatg taggagctgt ccagatgctg aaaagagaag gtcaaacagc tgaagctgta
     1741 cctagtctct ggaacgttga tgcagaagtc acagtccctg aacagaagcc tggggaagtt
     1801 gctgaggaac tagcaagctc ctacgagagg aaactcattg aggtggctga gatgcatggg
     1861 gagctgattg agttcaacga gcgtctacac agggccctgg tggccaagga agccctggtg
     1921 tcccaaatga ggcaggagct gattgacctc cgaggaccgg tgcctggaga tttgagccaa
     1981 acatctgaag atcagagttt gtcggatttt gaaatatcaa atcgggcact gatcaatgtc
     2041 tggatcccgt ctgtgtttct ccgaggcaaa gcagccaatg cgttccatgt gtatcaggtc
     2101 tacattcgga taaaagacga tgagtggaat gtgtatcgga ggtacaccga gttccgggcg
     2161 ctgcaccacc agctacagag tgctttcccg caagtgaggg cctacagttt cccacccaaa
     2221 aaggccatcg gaaacaagga tgccaagttt gtggaagagc ggcgaaagca actccagagc
     2281 tacctacgca gcgtcatgaa caaggtcatc cagatggtgc ctgagtttgc tgccaacccc
     2341 aagaaggaga ccctggtgca gctggtgccc ttctttgtgg acatcacccc acctggagaa
     2401 ccgctgaaca agagcagcag gcccaaagca gtttcccgct tccctaagct gtcccgaggc
     2461 caccccaggg aggtgcgcaa cgtggaacct caaagtggtg acctctgacc tcggtggact
     2521 ctcagccccc agccactttg tgctcaacct tgccatggca gctggccctg gacaccttgg
     2581 caggatgacc atgtccccac agagaacaca cccttcctgc tgccacatgc cacccaatta
     2641 aactggtcag tttta
//
