LOCUS       XM_030252877            5980 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus sorting nexin family member 27 (Snx27),
            transcript variant X3, mRNA.
ACCESSION   XM_030252877
VERSION     XM_030252877.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000069.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_030252877.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5980
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="3"
     gene            1..5980
                     /gene="Snx27"
                     /gene_synonym="5730552M22Rik; ESTM45; ESTM47"
                     /note="sorting nexin family member 27; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 5 mRNAs, 28 ESTs, 2848 long SRA reads, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 37 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:76742"
                     /db_xref="MGI:MGI:1923992"
     CDS             439..1467
                     /gene="Snx27"
                     /gene_synonym="5730552M22Rik; ESTM45; ESTM47"
                     /codon_start=1
                     /product="sorting nexin-27 isoform X2"
                     /protein_id="XP_030108737.1"
                     /db_xref="GeneID:76742"
                     /db_xref="MGI:MGI:1923992"
                     /translation="MAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQ
                     QLDARRRGLEEYLEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVT
                     VRVKKNSTTDQVYQAIAAKVGMDSTTVNYFALFEVINHSFVRKLAPNEFPHKLYVQNY
                     TSAVPGTCLTIRKWLFTTEEEVLLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQK
                     LHEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQL
                     ENQVIAFEWDEMQRWDTDEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCE
                     LKWRKEEY"
ORIGIN      
        1 agctccagcg gtcggcggag cgggcgcgcg ccggggtcgc gcggctgccg gagggggcgg
       61 gcgcgcgccg gaggagtgga ggcgtagggg ggcgggggac cgctcgcttg ctcgcaagat
      121 ggcggacgag gacggggaag gtattcaccc ctcagccccg caccggaatg gaggcggcgg
      181 cggggggtct gggctccact gcgccgggaa cggtggcggg ggaggcggcg gcccgcgggt
      241 cgtgcgcatt gtcaagtccg aatccggcta cggcttcaac gtgcggggcc aagtgagcga
      301 gggcgggcaa ctgcggagca tcaacgggga gctgtacgcg ccgctgcagc atgtgagcgc
      361 cgtgctgccc gggggggcgg ccgaccgggc cggggtgcgc aaaggggacc gcatcctgga
      421 ggtgtataca atgtttacat ggctgggagg cagctgtgtt ctaagcggta ccgggagttt
      481 gccatactgc accaaaacct gaagagagaa tttgccaact ttacatttcc tcgacttcca
      541 ggaaagtggc cattctcatt atcagaacaa caattggatg cccggcgtcg tgggttggaa
      601 gaatatctag aaaaggtgtg ttcaatccga gtcattggtg agagtgacat catgcaggaa
      661 ttcctgtctg agtctgatga gaattacaat ggtgtgtctg atgtagaact gagagtagca
      721 ctaccggatg gaacaacggt tactgtcaga gttaagaaga acagtactac agaccaagtg
      781 taccaggcta ttgcagcaaa ggttggcatg gacagtacaa cagtgaatta ctttgcctta
      841 tttgaagtga tcaatcattc ctttgtacgt aagctggcac ctaatgaatt tcctcataaa
      901 ctctacgtcc agaactatac atcagctgtg ccaggcactt gcctgaccat tcgcaagtgg
      961 ctctttacaa cagaagaaga agtcctctta aatgacaatg accttgctgt tacgtacttc
     1021 tttcatcagg ctgttgatga tgtaaagaaa ggttacatta aagcagaaga gaaatcttac
     1081 cagttacaga agctccatga acaaaggaag atggtcatgt acctcaacat gctaaggacc
     1141 tgcgagggct acaatgaaat catcttccct cactgtgcct gtgactcgag gaggaaggga
     1201 catgttatca cagccatcag catcacgcac tttaaacttc atgcatgcac tgaagaaggg
     1261 cagctggaga accaggtaat agcgtttgaa tgggatgaga tgcagcgatg ggacacagat
     1321 gaagaaggaa tggccttctg ttttgaatat gcgcgaggag agaagaagcc tcgatgggtt
     1381 aaaatcttca caccatattt caattacatg catgaatgct ttgagagggt gttctgcgag
     1441 ctcaagtgga gaaaagagga atattagtta gagactgatt atcccatgtg agccaggaca
     1501 ttctcccagc gaggctggcc tctggatggt gaatgggcta tgcaaaaaag ccctgcttct
     1561 ccccttgtgt agagggtgaa cactggctgc aggctctcct atctctcatg acttcatgga
     1621 ccctcttctg cctgtttgtt tgatttttgt tgttgttgct gctgctgctg ttgttgtttg
     1681 tttgattttt aatcaataac tctccatgct gttcctgacc caggagagca cctgtccaga
     1741 gttttagcca tttgactgga taagtcacag tagtgtcttt cttcactaac caagaaaata
     1801 aatgtggggg aaattttttg ctactgttgt ttataggtgt cagtgctgga gcagaattta
     1861 gaaaactctg tctaaatact tggttactta ctctgaaaga aaaatcagaa aatgaagaag
     1921 tatagtcagt cacttggaag ttggtgttct tgctctagta gaaagaacac tgggctctgg
     1981 aagtcatctg ggatttctcc tgcttctttt gtctgtgatt ttgggcatag caaccacctt
     2041 tttagatctg aattatctct tttgtaaaag agaaagactg agccaggtgg taaatattca
     2101 gagtcctctg tgatgtgagc ggctgtgttg gcttgggatt gttgaatccg gttgtcagcg
     2161 cgtgtgctgc tcccatcgtg tcggagggtt gtctccagat cggaggccct gctgctcctc
     2221 agtaactctt tttttttttt ttttcctttc agaatatttt ccagatggcg aggtcacagc
     2281 agagggatgt ggccacctag cctttcctca tccctttatc ttctctttgc cctcagcctc
     2341 ttagcctttt cgtctcccat gtcagacagt aaccattaac acaaaagaag aaaaaaagga
     2401 aaaaaaagtc actatgtccc aaagtcctaa gctaaatatt attaataact tcctgagaat
     2461 ttcccgtctc tggaactgag ctggtagaga gcaggttgat agtaccagaa gtccactgag
     2521 atcagacaca caagcccagc caacacgcca aagtcatctt tgtcgtttga cccgggcctc
     2581 ataccaacag actctccttg tactatattt ttaaaactgg aactatgaac tccatccatt
     2641 tgcactgttc aagcatatat atgtatgtat gtatgtaaaa attatatata cacaaattag
     2701 ctgcacgtat atacatatat atatttcttt ttaaatttca tattgatggc agtacctttt
     2761 ttagcttgtg tttttacaca cctttcacag aattcatgac ctctctcttg ctctctttat
     2821 tttgaaacaa actttaaaaa ggaaaaaaaa atacagggaa aatacctctc ctcatgaagg
     2881 actcgaaaag tttacaacct gcttgggttt tcttcccttt tttgtattga gtacagtttc
     2941 tggctgttgg tttgccatag agtctgagga tcgaggagtg tagtgtcttt atcttcaaga
     3001 gggtgctgag gaggagaaag gccgtttctc aagagcagtt gaggctgcag ggagtctaaa
     3061 gacctagagt ctcgattcca agtcattttc caagccatgg tccatcgatc gacgttgagt
     3121 ccgtcctcca tctccttcct gtttctttag ggtcttttat tatgctccct tttaactgac
     3181 ccaaaacagt tcagggtaat ctgaggaagc tgttatagta ggaaactttt tcttctgcaa
     3241 caggggttgt atcaggacta accctgacat cagaggttgg acagatggag gaaagggagg
     3301 atggaagctg tgcctcagat ttataagggc cttacctctt ccattcctgt ccagtaacca
     3361 tctattttac atcctctgtg agttctttaa acagctgtac gtggaaggag tgtcttgggt
     3421 aaacttagag tctgggttgc tgccaaccaa atcagagccc tgttcatgac agctgagggc
     3481 ccaagaagtg ggagtatggt caattttagt tcaccaccac catttacttc aaaggagact
     3541 gaagagaaat ctcttaaaga gttctttacc tggagctggg gctggtcccg aggctgaggc
     3601 tggggccggg agtgtttgcc tagcctgcat aaagccctca attccatccc cagcaccaca
     3661 taaaatttgg gtgttggggt attgtagcac acacctgtaa tctcagcacg tgggagggga
     3721 atgcaggaaa ctcagaattt tcaagtccac ctctgctaac taatgagttc aaggctatcc
     3781 tggatcacat atctcaaaag tagaagagtt ccttacctgc ccctgcactt agacctccta
     3841 ggacctaaaa gcaacatttg ggacagaggc caggctggca ctagagtaat agtctcaaac
     3901 cttgagtgta aagaactctg aggttaggta caactaaaac acgtctttga aactctttat
     3961 ctacttttcc ttcgatattg aagcctccac aggcttcgtc tttggcttta tgtagctgaa
     4021 aggcagccag aattggatgt agttggcagt gttggatttg gtttaaagtt tctttcatgc
     4081 cttggttttg cagagcattc attatgaggc tacttttctg tctccattat tctggcagcc
     4141 acttgtcgca ggaaggtgta aacacacctt ttaggatagt ctttccctcc cctgtccaaa
     4201 cccgtgggac cacaaagtac aaaatatagt agtgtttaaa gttgaaaagg gcaatacctg
     4261 atttggaggc tttaatcagg atcaactctc cctcttggct ttactaatga gtctgagtac
     4321 cttaagaggg ggcgagttga tttcctctcc aagatgctct ggaggccagc tgtgttcaaa
     4381 ctgtaaaaag agcaacattg cagctaattc cctcaggaag agagccttcc agaataggga
     4441 cagggctttg gaagtcctga agagtcagcc ccactgtgtt ggggttaaca gaatctgtag
     4501 gaacaccctg ctttaggtag tcttcctacc agaacaccca gctgcagcag ggagctggga
     4561 agaagcagct cccagggtct cccagtggag ctgcagtcct ggaagaggag gtcacggtgg
     4621 cctagaggcc cacagaggcc cacaggatca agttcttttg catgaagcag tgttagatgt
     4681 aactactccc tcccccaaac ccctaccctt cctttctcta atcccttcta tgtttcttag
     4741 acctggcttc tgcccaggaa ggcatctaca ggttttttgg gcagtttgtc tctggggaag
     4801 ggacttcccc tcccagcttc actccagcag aatcttcctg gtctccaact gttctttcct
     4861 ccacgaggag tttctgttct ctgatactaa aactcaagag atctttacgg agcaggaaac
     4921 tacttagtcc ctgagaagcc aggtgctcta ggaagctttg cttgggcagt gctttgagct
     4981 tgccgctctt tgtactttta ttccggtctt cgtctctccg ccttcccctt gcccttgcgg
     5041 aggcctcagc tcagcacagc tacagtcagt gttcagggca gttcccaggc cttgacagag
     5101 ctctcaggga ggaacaaggt aaatgctcta gcatcctctt gcctggccca tttaatttta
     5161 tcctttagtt acctgggcca gtagctttga attatccctt cattgctcca aacccgatgc
     5221 ctgaagcagc aaaatagggc actgataaga gggagcacct ctctcatctc agagtttcca
     5281 gcttaagggc cagctcctag aaagcagtct tcttaaaggg acctacatgc atttgcgttt
     5341 agctgaagtc tccaggaatg gaggtccttt ctgccctcct ttccattctg ctggcttcag
     5401 cacactgctg ctccttcacc agttggatgg gttgctttaa cttctttttg gaggagcagc
     5461 agtgtggctg aatacttagc gccagcggga gggagaacgc ttctttagtc ctccgtcttg
     5521 gattcttctt cctctaaccc tcagcatatc tgccagggct cctttccctg gatagcagca
     5581 gcttctttct cagcagtaac tgagggtgca tggaaatcgg gctctgggga ggagcgacac
     5641 cagagggact gatcctggta ggagcacttg gttagctgct gaccatgggt gccaacttgt
     5701 tattatgccc ccttgtaagc tgctgagctg ggcttcagtt tttcccaggc catgcacact
     5761 tataatttat ttgagagaaa ctaattgtat tttcactgca gtatcttgta cttttatttg
     5821 tgatttacaa aatgtgaaga gaaagtgcag agacccactg gctccagtgt ttctccaacc
     5881 ctgctctaga gctaaccact ctaagattgt ttggtaatgt tacttagtgt aattaattgt
     5941 aacatattct tttaaataaa ttgatttatt gatgaaacaa
//
