LOCUS       XM_030252876            5186 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus sorting nexin family member 27 (Snx27),
            transcript variant X2, mRNA.
ACCESSION   XM_030252876
VERSION     XM_030252876.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000069.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_030252876.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5186
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="3"
     gene            1..5186
                     /gene="Snx27"
                     /gene_synonym="5730552M22Rik; ESTM45; ESTM47"
                     /note="sorting nexin family member 27; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 mRNAs, 30 ESTs, 2520 long SRA reads, 1 Protein, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 35 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:76742"
                     /db_xref="MGI:MGI:1923992"
     CDS             439..1506
                     /gene="Snx27"
                     /gene_synonym="5730552M22Rik; ESTM45; ESTM47"
                     /codon_start=1
                     /product="sorting nexin-27 isoform X1"
                     /protein_id="XP_030108736.1"
                     /db_xref="GeneID:76742"
                     /db_xref="MGI:MGI:1923992"
                     /translation="MAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQ
                     QLDARRRGLEEYLEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVALPDGTTVT
                     VRVKKNSTTDQVYQAIAAKVGMDSTTVNYFALFEVINHSFVRKLAPNEFPHKLYVQNY
                     TSAVPGTCLTIRKWLFTTEEEVLLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQK
                     LHEQRKMVMYLNMLRTCEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQL
                     ENQVIAFEWDEMQRWDTDEEGMAFCFEYARGEKKPRWVKIFTPYFNYMHECFERVFCE
                     LKWRKENIFQMARSQQRDVAT"
ORIGIN      
        1 agctccagcg gtcggcggag cgggcgcgcg ccggggtcgc gcggctgccg gagggggcgg
       61 gcgcgcgccg gaggagtgga ggcgtagggg ggcgggggac cgctcgcttg ctcgcaagat
      121 ggcggacgag gacggggaag gtattcaccc ctcagccccg caccggaatg gaggcggcgg
      181 cggggggtct gggctccact gcgccgggaa cggtggcggg ggaggcggcg gcccgcgggt
      241 cgtgcgcatt gtcaagtccg aatccggcta cggcttcaac gtgcggggcc aagtgagcga
      301 gggcgggcaa ctgcggagca tcaacgggga gctgtacgcg ccgctgcagc atgtgagcgc
      361 cgtgctgccc gggggggcgg ccgaccgggc cggggtgcgc aaaggggacc gcatcctgga
      421 ggtgtataca atgtttacat ggctgggagg cagctgtgtt ctaagcggta ccgggagttt
      481 gccatactgc accaaaacct gaagagagaa tttgccaact ttacatttcc tcgacttcca
      541 ggaaagtggc cattctcatt atcagaacaa caattggatg cccggcgtcg tgggttggaa
      601 gaatatctag aaaaggtgtg ttcaatccga gtcattggtg agagtgacat catgcaggaa
      661 ttcctgtctg agtctgatga gaattacaat ggtgtgtctg atgtagaact gagagtagca
      721 ctaccggatg gaacaacggt tactgtcaga gttaagaaga acagtactac agaccaagtg
      781 taccaggcta ttgcagcaaa ggttggcatg gacagtacaa cagtgaatta ctttgcctta
      841 tttgaagtga tcaatcattc ctttgtacgt aagctggcac ctaatgaatt tcctcataaa
      901 ctctacgtcc agaactatac atcagctgtg ccaggcactt gcctgaccat tcgcaagtgg
      961 ctctttacaa cagaagaaga agtcctctta aatgacaatg accttgctgt tacgtacttc
     1021 tttcatcagg ctgttgatga tgtaaagaaa ggttacatta aagcagaaga gaaatcttac
     1081 cagttacaga agctccatga acaaaggaag atggtcatgt acctcaacat gctaaggacc
     1141 tgcgagggct acaatgaaat catcttccct cactgtgcct gtgactcgag gaggaaggga
     1201 catgttatca cagccatcag catcacgcac tttaaacttc atgcatgcac tgaagaaggg
     1261 cagctggaga accaggtaat agcgtttgaa tgggatgaga tgcagcgatg ggacacagat
     1321 gaagaaggaa tggccttctg ttttgaatat gcgcgaggag agaagaagcc tcgatgggtt
     1381 aaaatcttca caccatattt caattacatg catgaatgct ttgagagggt gttctgcgag
     1441 ctcaagtgga gaaaagagaa tattttccag atggcgaggt cacagcagag ggatgtggcc
     1501 acctagcctt tcctcatccc tttatcttct ctttgccctc agcctcttag ccttttcgtc
     1561 tcccatgtca gacagtaacc attaacacaa aagaagaaaa aaaggaaaaa aaagtcacta
     1621 tgtcccaaag tcctaagcta aatattatta ataacttcct gagaatttcc cgtctctgga
     1681 actgagctgg tagagagcag gttgatagta ccagaagtcc actgagatca gacacacaag
     1741 cccagccaac acgccaaagt catctttgtc gtttgacccg ggcctcatac caacagactc
     1801 tccttgtact atatttttaa aactggaact atgaactcca tccatttgca ctgttcaagc
     1861 atatatatgt atgtatgtat gtaaaaatta tatatacaca aattagctgc acgtatatac
     1921 atatatatat ttctttttaa atttcatatt gatggcagta ccttttttag cttgtgtttt
     1981 tacacacctt tcacagaatt catgacctct ctcttgctct ctttattttg aaacaaactt
     2041 taaaaaggaa aaaaaaatac agggaaaata cctctcctca tgaaggactc gaaaagttta
     2101 caacctgctt gggttttctt cccttttttg tattgagtac agtttctggc tgttggtttg
     2161 ccatagagtc tgaggatcga ggagtgtagt gtctttatct tcaagagggt gctgaggagg
     2221 agaaaggccg tttctcaaga gcagttgagg ctgcagggag tctaaagacc tagagtctcg
     2281 attccaagtc attttccaag ccatggtcca tcgatcgacg ttgagtccgt cctccatctc
     2341 cttcctgttt ctttagggtc ttttattatg ctccctttta actgacccaa aacagttcag
     2401 ggtaatctga ggaagctgtt atagtaggaa actttttctt ctgcaacagg ggttgtatca
     2461 ggactaaccc tgacatcaga ggttggacag atggaggaaa gggaggatgg aagctgtgcc
     2521 tcagatttat aagggcctta cctcttccat tcctgtccag taaccatcta ttttacatcc
     2581 tctgtgagtt ctttaaacag ctgtacgtgg aaggagtgtc ttgggtaaac ttagagtctg
     2641 ggttgctgcc aaccaaatca gagccctgtt catgacagct gagggcccaa gaagtgggag
     2701 tatggtcaat tttagttcac caccaccatt tacttcaaag gagactgaag agaaatctct
     2761 taaagagttc tttacctgga gctggggctg gtcccgaggc tgaggctggg gccgggagtg
     2821 tttgcctagc ctgcataaag ccctcaattc catccccagc accacataaa atttgggtgt
     2881 tggggtattg tagcacacac ctgtaatctc agcacgtggg aggggaatgc aggaaactca
     2941 gaattttcaa gtccacctct gctaactaat gagttcaagg ctatcctgga tcacatatct
     3001 caaaagtaga agagttcctt acctgcccct gcacttagac ctcctaggac ctaaaagcaa
     3061 catttgggac agaggccagg ctggcactag agtaatagtc tcaaaccttg agtgtaaaga
     3121 actctgaggt taggtacaac taaaacacgt ctttgaaact ctttatctac ttttccttcg
     3181 atattgaagc ctccacaggc ttcgtctttg gctttatgta gctgaaaggc agccagaatt
     3241 ggatgtagtt ggcagtgttg gatttggttt aaagtttctt tcatgccttg gttttgcaga
     3301 gcattcatta tgaggctact tttctgtctc cattattctg gcagccactt gtcgcaggaa
     3361 ggtgtaaaca caccttttag gatagtcttt ccctcccctg tccaaacccg tgggaccaca
     3421 aagtacaaaa tatagtagtg tttaaagttg aaaagggcaa tacctgattt ggaggcttta
     3481 atcaggatca actctccctc ttggctttac taatgagtct gagtacctta agagggggcg
     3541 agttgatttc ctctccaaga tgctctggag gccagctgtg ttcaaactgt aaaaagagca
     3601 acattgcagc taattccctc aggaagagag ccttccagaa tagggacagg gctttggaag
     3661 tcctgaagag tcagccccac tgtgttgggg ttaacagaat ctgtaggaac accctgcttt
     3721 aggtagtctt cctaccagaa cacccagctg cagcagggag ctgggaagaa gcagctccca
     3781 gggtctccca gtggagctgc agtcctggaa gaggaggtca cggtggccta gaggcccaca
     3841 gaggcccaca ggatcaagtt cttttgcatg aagcagtgtt agatgtaact actccctccc
     3901 ccaaacccct acccttcctt tctctaatcc cttctatgtt tcttagacct ggcttctgcc
     3961 caggaaggca tctacaggtt ttttgggcag tttgtctctg gggaagggac ttcccctccc
     4021 agcttcactc cagcagaatc ttcctggtct ccaactgttc tttcctccac gaggagtttc
     4081 tgttctctga tactaaaact caagagatct ttacggagca ggaaactact tagtccctga
     4141 gaagccaggt gctctaggaa gctttgcttg ggcagtgctt tgagcttgcc gctctttgta
     4201 cttttattcc ggtcttcgtc tctccgcctt ccccttgccc ttgcggaggc ctcagctcag
     4261 cacagctaca gtcagtgttc agggcagttc ccaggccttg acagagctct cagggaggaa
     4321 caaggtaaat gctctagcat cctcttgcct ggcccattta attttatcct ttagttacct
     4381 gggccagtag ctttgaatta tcccttcatt gctccaaacc cgatgcctga agcagcaaaa
     4441 tagggcactg ataagaggga gcacctctct catctcagag tttccagctt aagggccagc
     4501 tcctagaaag cagtcttctt aaagggacct acatgcattt gcgtttagct gaagtctcca
     4561 ggaatggagg tcctttctgc cctcctttcc attctgctgg cttcagcaca ctgctgctcc
     4621 ttcaccagtt ggatgggttg ctttaacttc tttttggagg agcagcagtg tggctgaata
     4681 cttagcgcca gcgggaggga gaacgcttct ttagtcctcc gtcttggatt cttcttcctc
     4741 taaccctcag catatctgcc agggctcctt tccctggata gcagcagctt ctttctcagc
     4801 agtaactgag ggtgcatgga aatcgggctc tggggaggag cgacaccaga gggactgatc
     4861 ctggtaggag cacttggtta gctgctgacc atgggtgcca acttgttatt atgccccctt
     4921 gtaagctgct gagctgggct tcagtttttc ccaggccatg cacacttata atttatttga
     4981 gagaaactaa ttgtattttc actgcagtat cttgtacttt tatttgtgat ttacaaaatg
     5041 tgaagagaaa gtgcagagac ccactggctc cagtgtttct ccaaccctgc tctagagcta
     5101 accactctaa gattgtttgg taatgttact tagtgtaatt aattgtaaca tattctttta
     5161 aataaattga tttattgatg aaacaa
//
