LOCUS       NM_029394               2016 bp    mRNA    linear   ROD 08-JUN-2024
DEFINITION  Mus musculus sorting nexing 24 (Snx24), transcript variant 1, mRNA.
ACCESSION   NM_029394
VERSION     NM_029394.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2016)
  AUTHORS   Mizutani,R., Yamauchi,J., Kusakawa,S., Nakamura,K., Sanbe,A.,
            Torii,T., Miyamoto,Y. and Tanoue,A.
  TITLE     Sorting nexin 3, a protein upregulated by lithium, contains a novel
            phosphatidylinositol-binding sequence and mediates neurite
            outgrowth in N1E-115 cells
  JOURNAL   Cell Signal 21 (11), 1586-1594 (2009)
   PUBMED   19576982
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC148020.3 and AC109291.12.
            
            On May 28, 2019 this sequence version replaced NM_029394.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC051168.1, AK017610.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-228               AC148020.3         129265-129492       c
            229-312             AC148020.3         47622-47705         c
            313-417             AC148020.3         34883-34987         c
            418-512             AC109291.12        131820-131914
            513-545             AC109291.12        133367-133399
            546-610             AC109291.12        133928-133992
            611-2016            AC109291.12        138267-139672
FEATURES             Location/Qualifiers
     source          1..2016
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="18"
                     /map="18 29.0 cM"
     gene            1..2016
                     /gene="Snx24"
                     /gene_synonym="2810011K15Rik; 5730433I16Rik"
                     /note="sorting nexing 24"
                     /db_xref="GeneID:69226"
                     /db_xref="MGI:MGI:1916476"
     exon            1..228
                     /gene="Snx24"
                     /gene_synonym="2810011K15Rik; 5730433I16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            229..312
                     /gene="Snx24"
                     /gene_synonym="2810011K15Rik; 5730433I16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            313..417
                     /gene="Snx24"
                     /gene_synonym="2810011K15Rik; 5730433I16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            418..512
                     /gene="Snx24"
                     /gene_synonym="2810011K15Rik; 5730433I16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            513..545
                     /gene="Snx24"
                     /gene_synonym="2810011K15Rik; 5730433I16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            546..610
                     /gene="Snx24"
                     /gene_synonym="2810011K15Rik; 5730433I16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            611..2016
                     /gene="Snx24"
                     /gene_synonym="2810011K15Rik; 5730433I16Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1996..2001
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Snx24"
                     /gene_synonym="2810011K15Rik; 5730433I16Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2016
                     /gene="Snx24"
                     /gene_synonym="2810011K15Rik; 5730433I16Rik"
                     /note="major polyA site"
ORIGIN      
        1 acacctcggc cccgccgagc cccacgccgc ccgcgcccgc caacctcgcg ccgccgacta
       61 aggtccgggc cgcgcacctc gggccgcgcg cgcgccggga ggggagcggg aggcggggcg
      121 gtctacgcgg tgcggcggag cggtgagtgg cgcggccccg ccgcggccat ggaggtctac
      181 atcccgtcct ttcgccacga ggacagcgat ctggagcgcg gctacacggt gtttaaaata
      241 gaagtgctaa tgaacggaag aaaacatttt gttgagaaac ggtacagcga attccatgcc
      301 ttgcacaaaa agcttaagaa atgtataaag actccagaaa tcccttctaa acacgtcagg
      361 aactgggtcc ccaaagtctt ggaacaacgg cggcaaggcc tggaaacgta tttacaggcc
      421 gtcattttgg agaatgaaga gcttcccaaa ctcttccttg acttcctcaa tgtacggcac
      481 ttgccctctc taccgaaagc agaaagctgt ggatctttcg atgagacaga gtctgaagag
      541 tcaagcaagc tgtcccacca gccggtgctg ctgttccttg gggatccata cgtcttgcct
      601 gcagccagcg attttccaaa tgtggtcatc gaaggagttc ttcatgggat atttttctct
      661 cacctgcagc ccaggtagaa accctacccg gctggaagaa gctgaagtga gtgtcgatgc
      721 cgatggcaag aaaatcgata tctctaccaa gttaaccgaa actctgagac acaatagctc
      781 tagctagtgg gaaaattcac agttccagct tcctttggag cagggacatt tctattagaa
      841 tggtgctttt aaaattagaa actgaaccgg ggtggggtca gtttaagacc aattatgtga
      901 gaagtgaaag ggaaattaca agagaggtta ggaaaaggag gccacagtgg attactggga
      961 gtgtcacaaa atagagccag cctctgcttc agtcacacta cctgctaatt ggaaatcatg
     1021 tcttgagtca cgctgtgata ctgaacaact tcggtggcct tttgctcaga ccttggacac
     1081 cctcatcttt gcgccatgag agttctctca gtgggggata ctgtattctg gagtgtgggc
     1141 acctgaagag tatcccggag cccactgtgc cggtctgagg atccagttat actgacagta
     1201 gaacacactt tcatttccat tacagtgggg atgcctccca cctacagatt agctgccagc
     1261 atcagtgctg gagatgaaat gggtgttggg accacccttg agagcactct agaaaggcgc
     1321 tgtatgggaa gtctgacctc cctcatcctc tccctccagt actggaaagt atgagtgcgc
     1381 ctctgaaaac cagctgacac ccctggcgaa gttccagggg ccgttccata tagaaagtac
     1441 gtactctaaa cactaaaatc agactgcaaa attcttgtcc tgcaggaatg ggacatgggg
     1501 tcacagtggc cacaatagga gcaaacagac tgtttgtggc acggttccct caatggtgta
     1561 cacccacgcc gctgttcagg ttcctcttca ctgacatcac gtatggatta aagtgagtta
     1621 gatgctcgat gctgtctctc cactggatgt caaacagacg gtcatctttc acttagtgat
     1681 ggggtagagt gcgtatgtcc tacctgtgtg taaatgctga tgaacagcct acttacagct
     1741 atgaattttc ataaatttaa atgtgggagg aaatatttaa aattaaaata ccatgtcatg
     1801 aatttttatt agagcctaaa cctacagatt gaaagcctgc tgcaaacttt taaaaaataa
     1861 catttttatg atggattgtg taatcacatg ttggaaataa agtaaccaag tgttatcaaa
     1921 aaaaaaaaaa actaaatagt gaagtattat agatactttt ttaaatgttt ttatgttact
     1981 agctattttg agttaaataa aaacaaacaa aagtaa
//
