LOCUS       XM_011247646            7297 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus sorting nexin 12 (Snx12), transcript
            variant X3, mRNA.
ACCESSION   XM_011247646
VERSION     XM_011247646.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000086.8) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_011247646.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7297
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="X"
     gene            1..7297
                     /gene="Snx12"
                     /gene_synonym="2610001F05Rik; SDP8"
                     /note="sorting nexin 12; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 12
                     mRNAs, 60 ESTs, 1246 long SRA reads, 12 Proteins, and 97%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 40 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:55988"
                     /db_xref="MGI:MGI:1919331"
     CDS             19..642
                     /gene="Snx12"
                     /gene_synonym="2610001F05Rik; SDP8"
                     /codon_start=1
                     /product="sorting nexin-12 isoform X2"
                     /protein_id="XP_011245948.2"
                     /db_xref="GeneID:55988"
                     /db_xref="MGI:MGI:1919331"
                     /translation="MRARVRAAVVWGLAGYFASGRGCARSCLRPLSPTPFAGTGLFFG
                     KMSDTAVADTRRLNSKPQDLTDAYGPPSNFLEIDIFNPQTVGVGRARFTTYEVRMRTN
                     LPIFKLKESCVRRRYSDFEWLKNELERDSKIVVPPLPGKALKRQLPFRGDEGIFEESF
                     IEERRQGLEQFINKIAGHPLAQNERCLHMFLQEEAIDRNYVPGKVRQ"
ORIGIN      
        1 cggtgtgtgc gtgcgcgcat gcgtgcgcgc gtgcgcgccg ccgtcgtctg ggggttggct
       61 ggttattttg caagcgggag gggctgtgcg cgctcttgcc tcaggcctct gtcccccacc
      121 cccttcgccg gtaccgggct cttcttcgga aagatgtcgg acaccgcagt ggctgacact
      181 aggcgcctta actcgaagcc ccaagacctg accgacgctt acgggccgcc cagtaacttc
      241 ctggagatag acatctttaa tccacagacg gtgggcgtgg gccgcgcgcg cttcaccacc
      301 tatgaggttc gcatgcggac aaacctaccc atcttcaagc tgaaagaatc ctgtgtacgg
      361 cgacgctata gtgactttga gtggctgaaa aatgagctgg agcgagatag taagatcgta
      421 gtaccaccac tgcctgggaa agccttgaag cggcagctcc ctttccgagg agatgaaggg
      481 atctttgagg agtctttcat tgaagaaagg aggcaaggcc tcgaacagtt tattaacaaa
      541 attgctgggc acccactggc tcagaatgaa cgctgtctac acatgttcct gcaggaggag
      601 gcaattgata ggaactacgt ccctgggaag gtgcgccagt aggagtccct ctcaccactt
      661 gccctctact tttcctgctg aaatgacatt ggtttttaca ctaagcctct ctctcttttt
      721 gatctgaagt tggctaccca tcccctggct tgatagaccg tcctgcattg tgccccttgg
      781 taccagacta caccgtgtgg gcgctctgct agtatctctt ctctgaagag aggtccttgg
      841 ggaaaaggat tgctgagtct ggtgtgaccc tggtcagaga gatcaggatt agattttgac
      901 aggggacttg gaacccacct cagtgttgaa gatccttgag atagattagc tctctagctg
      961 ctgagcccat gctggtagct gagtagcccc tttcccacct cgccagtgtc ggtgtccttg
     1021 ctgccttttg atttttatcc tctgttacag attttttttt taaagatttc tcctttcatt
     1081 gtgcacaagt gctgagactc tgaggctcca tttcttctgt gtatatatcc tgacttgggg
     1141 cttttattca gcaaattgtt cattcttctg tcagacaatg tcatattcaa ctctgttcat
     1201 attaaaccac tgtgaagcaa gcctccgttt ttctccttaa gtgtaaatgt attatttcct
     1261 agtgctgagt acatgctgga tattgtgtag aactcatcta acatggccat tgtcctgggg
     1321 tgatgagtaa gctttgagtt tatattacat tacagaacag cagaatctag actgcttata
     1381 gtagtttacc tatggtttct tgtaacttac aactgacttt gtcacataga taatgcatct
     1441 ccttccagaa agtagccata taattcctgt ggtttagggc agatttagca gatttgattc
     1501 ttatgtttct ggaattctta tatttgactt gaatgtattt atattacctg tgtttatata
     1561 tatgcatatg caatgtgtac ataaacatat acatatagac ccatccgctg atacatccat
     1621 atatcatcaa caatttcttt cattgccctt ttgactcatt tgatgcttca ttgtattgtt
     1681 tttcaaaaag atttgatgca gacagaaagg tgcatgaaat cctgataagt tctgatgggt
     1741 attttcatct gactaatatg gtcatgaaca gggtaggttc cttgaatggt tggaatgagg
     1801 gaggtaggaa tcttgtcatt tggtaaatta aagagtttta gagctggaca tgatagcacc
     1861 gtttgtaacc ccaggagcat caggagttca aggccagcct tcatttcatg attaatttga
     1921 agtcaacctg gtcaatatgg gacctcatcc tcctagaaaa cctactttta atttaattta
     1981 aaatggaaca gtggtatcga aaaatgaaaa caatggcata gaaaatgttc aaaagatgag
     2041 gacattacag agacttaaga gtgatacgtg gttttaaata gaagagccag ctgaattaaa
     2101 gaggttaaag gatttttgat cattagagaa tgagttgagt gaagatatct gggagggtag
     2161 gaagactaag tgtttctgtg aaataaaggg aaagagtgat caagagagcc agcctttgtg
     2221 cgcagcagta ttgcagaagg gactggagaa taactagaga aattggtaat aaaataaagt
     2281 accattctta ttttagatag acagtactca gctcccttag acacgtgtag ggtaggggag
     2341 tcagagtaca agtaagatga gtgagtatgt tgtatttctc acagaaattc aagagctttc
     2401 tatacaagac aaaaagagat aaagggggaa ggcatatcta cttattcccc cttctccctt
     2461 attcttttgt ttgagacaag gtttcacttt tgtagcccat gctggcctgg aacttgctca
     2521 gggaagcttc aaatttgtga ttgttctgtc tctgccttct gggtgttatg aatgtatggg
     2581 tgatttcctt ttatttatta actttaatat ccaccaagtt caatttcctc tttttggagg
     2641 aaaatgggcc atttaaaaca cagccttgct gggcagtggt ggtgcacgcc tttaatccca
     2701 gcacttggga ggcagaggca ggtggatttc tgagtttgag gccagcctgg tctacagagt
     2761 gagttccaag acagccaggg ctacatagag aaactctgtt tcaaaaaacc aaaacaaaca
     2821 aaacaaccaa cccccccaaa acaaacaagc aaacaaacaa accacacagc ctttaggtcc
     2881 tataagaact ttaaacccaa gtcctcttac ctatctatac tgaggcaagg catagttttt
     2941 tttttaaaca gggaattcaa aattatacac atatttgagt gcttgctact aatgaatttc
     3001 cccctctttt accacttagc ccagagagat tgaaccttat ctaggaggca gaggctaaca
     3061 acaaatttta tacaaaacta gacctaaaag aagtctacat cttcacattc caaagatgcc
     3121 ttacctaccc tttgacctat tggaaatgag ggttcagcta gtaaaggtgg gaaaggtgac
     3181 caacaggctt cgcatgcgtt tttgtatggt acgtcgccta ggtgagacac ttctgtgttg
     3241 aaatacttgc tgtaagaatg taaaccaaat cacctgctgt ggaagtttaa ccagctgctc
     3301 actgcaatgg gtatttcttc atgtccttga gcactgttca gtcactcctg atactctctt
     3361 aggcacaaga aacattctaa tttcccctta tttggtcttt taaccctttt atctttataa
     3421 ttgtgaagtt tctccaaagt cttcacatga gggggtttga aactgagtac tcctttaatt
     3481 gtagtctaaa ggttaggtgc ttcttactcc agttctatac atcatagtaa ttaagctgtt
     3541 tttgagatgg gtcaggtagc tgagactgct tttgagtttg ctatgtagtt gagtatctcc
     3601 tgatcttcta cttctactcg caaatgctgg ctttaaatgc tgtgctacta tgcctggctt
     3661 ttttatttta tttttttagg cagggtctca ccctgtacct caaagtgact tagaagtcta
     3721 gaacttacta tttacctagg ctagcctcaa acgcatgggt gatcctcttg ccttagtctc
     3781 ctgaatgttg gaattgtagg aataagtcac cgtgcccaac ctcaagatta cttttgattt
     3841 ataaactctt atgaatactt taatttagtt tgtggttttc tgcttctccc tttctgacca
     3901 cccaccattt atctttcctt ttttccttgt caatacaaca gtttgccttc ttaattttat
     3961 ttttagattt atattatttt ccttctctgt gtgtgtgtgc gcgcacgcac aagcgcacgt
     4021 ggtctgtcta tgtatttttg tctgtggtgt ttttttttct ggatacttac ataaaatata
     4081 caaataggag taattatcaa tatcacaaaa ggattctttt aaccctttgg gggctctttt
     4141 aaataagtgg tttatatggt agccatattt atttacttgt ctgtttttga tggtcttact
     4201 ctaacccccg ctagcctcaa actcattatg tagcccagac tgctgagtat tctctggctt
     4261 agcctattga gtgctcccat ttactggtgt atgccatgat actttgctct tctccagcgt
     4321 tttcacatgc ttgtatgtag attataaatt cctttacctg gccgggcagt ggtggcacac
     4381 acctttaatc ccagcatttg ggaggcagag acaggcagat ttctgagttc aaggccagcc
     4441 tggtctacag agttccagga cagccagggc tacaaagaga aaccttgttt cgaaacaaaa
     4501 caaaacaaaa attcctttac ctggaaaaac tgaaggtaaa aggttaagat tgttaacagg
     4561 aactgtcagt tagacataga taaaaaaatc cgaagaggaa tagatagaga gatggcatct
     4621 ccagtgcatc tgatgccctt ttctgacctc catggacacc aggcatagat aggcaaagta
     4681 ttcacatgaa agaaaagaaa taaatcttta ggctggagag atggctcagt agtaagagca
     4741 tggctgctct tccagaggtc cctggtttaa gtccagcatc cattgtcagc ttacaaccat
     4801 ctgtaacccc agtcccaggg atcctcttct ggcctccatt gtcactgcat tcacatggtg
     4861 cagtatactc acaacagcaa atagaaacac agtataaata aatctttaaa aaaaatgtta
     4921 aggaaaccat agctcttaac aaaggaatac attcgtagaa ttgtaaaaga tttttctttc
     4981 cttgtgcatt ctctaaaact ggtgtatcct agagctccct tccgtcttcc tctgacttca
     5041 tgtatgtgta ggaacattca cacacacatt gtttaaaaaa tacaacattg ttttactact
     5101 atgtaaatta gtatatcatg caatgtatta catatttctt tttgcattta tatgtggaca
     5161 tttacctcat ttagaaaatg aaaagaaaat aatgggatag cattcaatag tatagtttta
     5221 ctacagttta acaattcacc tattgatgga aacttgcctc taatcattcc gtgttataaa
     5281 tactgcattt aatcttaatc ctgtgtctaa gtagttctgt gggatagaga gaaggaattg
     5341 ctgactcgaa gagtgagtgc agtttgtact ttgataacta ctgctaaatt actgttttct
     5401 cccactcccc ttttttgaaa tagagtttct ctttgtatcc ctagctggcc tggaactcac
     5461 tgagatccac ctacttccca cttgcttggt tttaaagatg tgggccacca agctggctaa
     5521 attactttct ttataagggt gtagtttaga cccctaataa tatcaaataa ctgtatctgc
     5581 agctcccctc caatgaggaa attcatgttt ccctacaaga agtttcccag ccaggcgatg
     5641 gtggtgcatg cctttaatcc cagcacttgg gaggcagagg caggtggatt tctgagtttg
     5701 aggccagcct ggtatacaga gagagttcca ggacagccat tgctatacag agaaaccctg
     5761 tctcaaaaaa acaaaaacaa acaaaaaagt ttccctgcta atggtacaaa ttaaaataac
     5821 atacaattac caaaattatt ttaaaatgtc attttcagta attgtaattt gtatttcttg
     5881 atgcatttag ttctaataat accaactctt atgctatggg tttaacaagt ttccccacac
     5941 atttaatttt ggtcattcta gaagtattat ctttctgtca gttagttaag gttcttaacc
     6001 actatttagc tatcattttt aagctaatgg ccctgaatat ttctattttt tttccatttg
     6061 ccttagggag acagcaaagt gaattagtcc attggtatat gaggtattct caagaccagt
     6121 tccatcttag attagcacta cttgaagcca agcccagagc aactcccatg gacccacatg
     6181 gagatagaat ttgcttcttg ggtccctgcg gaatccagct tggacctctt cttttgttat
     6241 ttttcttaga cctaaacctt aaattctagg aagggaccat ataaggatgg tggtgggggt
     6301 aggagaggac tgaaaacaac atgttgattt aaatagccaa attacaagat cccgctcctc
     6361 tggttggcag tttgtatgcc atggaaagca cattcctccg tcatctaatt ggtctcttaa
     6421 tggagagatg agccacagga agcagctgct atgaaaaacc aatgggaccg ctgtggtgat
     6481 gcttttgaaa gtgaaggcct gcctacctgg ctcctgtggc tgaattagta actgcttgcc
     6541 cccgacctat acacactcca tagtttcaca ttttacatgt gtctcagagt tattgtccat
     6601 tatgacacag ttgactcagg tcataggttt tatggcttgc cttccttcct tccttcctcc
     6661 ttccttcctt ccttccttcc ttccttcctt ccttccttcc ttccttcctt ccttccttcc
     6721 tttctttctt tctttctttc tttctttctt tctttctttc tttttggaga cagggtttct
     6781 ctgtagccct ggctgtcctg gaactcactc tgtagaccag gctggcctcg aactcagaaa
     6841 ttcgcctgcc tctgcctccc aagtgctggg attaaaggtg tgtcctttct taaactgtac
     6901 atcttccatc aaggccagca tggagctctc ctttttgttt ggttcctgag gtcctgggtc
     6961 taagcaatgg attgttttct ggaatgttta ccttccttgc tgcaacatca caggattcac
     7021 aatgaaagca ggcaaggtca caaaagctgg agattgaaga tctgtgtact aagtccattg
     7081 gaagaacaga tatctgacct agaaagtttg tccattcctg tgctaccatt tcagccagtc
     7141 ccctgtcatc tgcttttatt ctttgcacct ttatatacat accaatttac cataggaaat
     7201 ccattgtgtt gtgtttttat ttctacaaat ttaccattca gtgttttgga aatgttttta
     7261 cttagtagat ttattaaatg tgacacagta tatatga
//
