LOCUS       XM_006534375            2805 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus sorting nexin 11 (Snx11), transcript
            variant X1, mRNA.
ACCESSION   XM_006534375
VERSION     XM_006534375.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000077.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 8, 2019 this sequence version replaced XM_006534375.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2805
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="11"
     gene            1..2805
                     /gene="Snx11"
                     /gene_synonym="4933439F10Rik; A930041K09Rik"
                     /note="sorting nexin 11; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     mRNAs, 9 ESTs, 357 long SRA reads, 7 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 27 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:74479"
                     /db_xref="MGI:MGI:1921729"
     CDS             490..1305
                     /gene="Snx11"
                     /gene_synonym="4933439F10Rik; A930041K09Rik"
                     /codon_start=1
                     /product="sorting nexin-11 isoform X1"
                     /protein_id="XP_006534438.1"
                     /db_xref="GeneID:74479"
                     /db_xref="MGI:MGI:1921729"
                     /translation="MGLWYRMLENQDLEEVITVRVQDPRVQNEGSWNSYVDYKIFLHT
                     NSKAFTAKTSCVRRRYREFVWLRKQLQRNAGLVPVPELPGKSTFFGGSDEFIEKRRQG
                     LQHFLEKVLQSVVLLSDSQLHLFLQSQLSVPEIEACVQGRGAMTVSDAILSYAMSNCG
                     WAQEERQSTSHLAKGDQLNSCCFLPRSGRRSSPSPPLSEEKEQLETWAPVMDSEGPSS
                     ESPTLLPSSSLPACWDPARPEEGLSVSQPARRAVAADQAGPMEPTQLDTAWDK"
ORIGIN      
        1 ccctagcgat ttccggaaag atgcggattt cagcttaggc ctgggcggga tggagagcct
       61 cctctgacca gcgatcgcca ctgagagccc tggtcttcag gggtggggcg tccgggacac
      121 tcaggattgg cccgtcggga gccgcctccc gtcgtgcacc ggggcaccgg cgactcaccc
      181 ggaaggagaa gccggtatcg gactatatgg tgcggtgctg gtggtgtcgc tgtggagagc
      241 tgctgctgct gctctcaggt gaaaggagtg ggttaccgac tgaaaaatga gaacagctgc
      301 ttgatggacg ggacaggttt tctgtcaggc ggaagagctt cctcgaacac ctgtgggtat
      361 ttaggaaggc gaggttttag aattgctgtc tgttgacacc aaaggctcaa gaacgagagc
      421 cagcccgcat catttgttgg cagtacatat tggctggagt cagttttcat ttcaagatgt
      481 gcccttccca tgggcttgtg gtataggatg ttggagaacc aagacctgga ggaggtgatc
      541 acagttcgag ttcaggaccc cagggtgcag aatgaaggct cctggaattc ttacgtggac
      601 tataagatat tcctccatac gaacagcaag gcttttaccg ccaagacgtc ctgtgtgcgg
      661 cggcgctacc gtgagtttgt gtggctgagg aagcagctgc agaggaacgc cggcttggtg
      721 cctgttccgg agcttcctgg gaagtccact ttctttggcg gctccgatga gttcattgag
      781 aagcgacgtc aaggtctcca gcatttcctt gaaaaggtcc tacagagcgt ggttcttctg
      841 tcagacagtc agttgcatct cttcctccaa agccagctct cggtgcccga gattgaagcc
      901 tgtgtccagg gccggggcgc catgacggtg tccgatgcca ttctttccta tgctatgtcc
      961 aactgtggct gggcccagga ggagaggcag agcacctccc acttggctaa aggagaccag
     1021 ctcaacagtt gctgctttct tccaagatca gggcgcagga gctccccttc gccgcctctc
     1081 agtgaggaga aggagcagtt agagacgtgg gctccagtga tggactctga gggcccatcc
     1141 tcagaaagcc ccacgctgct gcccagctcc tccttgcctg cctgctggga tcctgcaaga
     1201 ccggaggagg gactctctgt gtcccagcct gcgagaaggg ccgtggcagc ggaccaggct
     1261 gggccgatgg agcccactca gctagacaca gcgtgggaca agtgagcagt ggctgatctc
     1321 tctgttctcc tgtgtggtgg agaagatgca gcccaaggtc acatacagga gggattgggg
     1381 acaaggcagg tgtagggcag gtcaggccgt tgaacatctt ccactcaaat ctgctcaggt
     1441 ttgttatgca gcgattgtgg ctgtccgctg tatctcctct gtgggagtaa acgccacact
     1501 gtgtttgtga gttcagcaca gggcccagaa gctgctggtt ttaaatattt actttcccag
     1561 gaggtgggtt tcttcaggtg tttgtttaaa gagggctgtc acaggtgaat ggtttgggga
     1621 acccttcttg gcagagtttt agctgcctta ctgaacattg tcccaacaga aagttcctat
     1681 cgttctcctt ccttcttggc aggcttcagg ttttgctgca gcccctggag ccaacatttt
     1741 ggttgtggga ggctgacctc ttgcctgcct ccttgtgtgg acagagtggt gaagacgtat
     1801 tcctcacctc cttgcctttc agtaaatggc cacgatgtga ctatttgttg aggtttccag
     1861 cctcttccaa gaccttgcca ggctgagtgg ggcctgagag cttgcaggca cttaaagctt
     1921 cctggcaaag gggccggcca caggcagagg gaaaggaaca ggtcagaggc gttgctctgg
     1981 cagaggcggc tcgggctgcc catcgtgttt ctgcggggtt gaggtgggct cccttctttg
     2041 tagatgcctt tcctctcgta ataacaactc cttgccccca gggctctggc tgccagggcc
     2101 tactgctgct ttcctgggaa gccgcaagtt cagtcagtgg ggcacacagg ctttgtttca
     2161 gcctggaagt gagggctctg gagatggaga taggagccat aagctctcct tcagacggtg
     2221 aggcggctcc tgcctcctgc tactgaaatc tgcagacagc aggggcggct gcctgggggg
     2281 ctgggcaggc tgggtgccgg gcccaccttg gtgctgccgc gctgctctta ggtttgtgtg
     2341 tgtttctctc ctggccatcc accccggctg tgggtccacc ccagccgagg gactcctggc
     2401 ctgcattgcg ggattgtcag tggcatttag ttgagagttg aggggctttg gcctgaaata
     2461 aactgcaagt atttaagact gttgttgcaa tttgtgtcta acaagctgta gcagggtagg
     2521 agggagtgag agctggcagg agttactttc ataaatcatg aatttatcag cgtggaaata
     2581 acgccataga actgtgcgct ggagctctct tgcattgtgt gtgagactca agttcaccac
     2641 cgcaggaggg acggttttcc agagagctag gatgtggctc ttctcacaga gctgggcatg
     2701 aaccttgtta ggtataattt acctgatgct gcttccgtct tcgaagcctg tctgaggtgc
     2761 caggtgctaa aagagaaata aagtttgtta acaggcagat gcaaa
//
