LOCUS       NM_001163389            2521 bp    mRNA    linear   ROD 30-JUL-2024
DEFINITION  Mus musculus sorting nexin 11 (Snx11), mRNA.
ACCESSION   NM_001163389
VERSION     NM_001163389.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2521)
  AUTHORS   Huang,H.L., Li,C., Ma,W., Yin,S., Zhao,H., Deng,S., Shu,X., Wu,D.,
            Li,J., Huang,R., Cheng,N., Huang,J. and Li,Z.
  TITLE     Sorting nexin 11 knockout mice exhibit enhanced thermosensing
            behaviour
  JOURNAL   Genes Brain Behav 19 (6), e12625 (2020)
   PUBMED   31730264
  REMARK    GeneRIF: Sorting nexin 11 knockout mice exhibit enhanced
            thermosensing behaviour.
            Review article
REFERENCE   2  (bases 1 to 2521)
  AUTHORS   Joyal,J.S., Nim,S., Zhu,T., Sitaras,N., Rivera,J.C., Shao,Z.,
            Sapieha,P., Hamel,D., Sanchez,M., Zaniolo,K., St-Louis,M.,
            Ouellette,J., Montoya-Zavala,M., Zabeida,A., Picard,E., Hardy,P.,
            Bhosle,V., Varma,D.R., Gobeil,F. Jr., Beausejour,C., Boileau,C.,
            Klein,W., Hollenberg,M., Ribeiro-da-Silva,A., Andelfinger,G. and
            Chemtob,S.
  TITLE     Subcellular localization of coagulation factor II receptor-like 1
            in neurons governs angiogenesis
  JOURNAL   Nat Med 20 (10), 1165-1173 (2014)
   PUBMED   25216639
REFERENCE   3  (bases 1 to 2521)
  AUTHORS   Bailey,P.J., Klos,J.M., Andersson,E., Karlen,M., Kallstrom,M.,
            Ponjavic,J., Muhr,J., Lenhard,B., Sandelin,A. and Ericson,J.
  TITLE     A global genomic transcriptional code associated with CNS-expressed
            genes
  JOURNAL   Exp Cell Res 312 (16), 3108-3119 (2006)
   PUBMED   16919269
REFERENCE   4  (bases 1 to 2521)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL607127.12, AK042409.1 and AV350384.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK042409.1, BC014719.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-24                AL607127.12        73678-73701         c
            25-1999             AK042409.1         1-1975
            2000-2513           AK042409.1         1977-2490
            2514-2521           AV350384.1         214-221
FEATURES             Location/Qualifiers
     source          1..2521
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 60.1 cM"
     gene            1..2521
                     /gene="Snx11"
                     /gene_synonym="4933439F10Rik; A930041K09Rik"
                     /note="sorting nexin 11"
                     /db_xref="GeneID:74479"
                     /db_xref="MGI:MGI:1921729"
     exon            1..101
                     /gene="Snx11"
                     /gene_synonym="4933439F10Rik; A930041K09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            102..195
                     /gene="Snx11"
                     /gene_synonym="4933439F10Rik; A930041K09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            196..250
                     /gene="Snx11"
                     /gene_synonym="4933439F10Rik; A930041K09Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             209..1024
                     /gene="Snx11"
                     /gene_synonym="4933439F10Rik; A930041K09Rik"
                     /codon_start=1
                     /product="sorting nexin-11"
                     /protein_id="NP_001156861.1"
                     /db_xref="CCDS:CCDS25302.1"
                     /db_xref="GeneID:74479"
                     /db_xref="MGI:MGI:1921729"
                     /translation="MGLWYRMLENQDLEEVITVRVQDPRVQNEGSWNSYVDYKIFLHT
                     NSKAFTAKTSCVRRRYREFVWLRKQLQRNAGLVPVPELPGKSTFFGGSDEFIEKRRQG
                     LQHFLEKVLQSVVLLSDSQLHLFLQSQLSVPEIEACVQGRGAMTVSDAILSYAMSNCG
                     WAQEERQSTSHLAKGDQLNSCCFLPRSGRRSSPSPPLSEEKEQLETWAPVMDSEGPSS
                     ESPTLLPSSSLPACWDPARPEEGLSVSQPARRAVAADQAGPMEPTQLDTAWDK"
     exon            251..337
                     /gene="Snx11"
                     /gene_synonym="4933439F10Rik; A930041K09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            338..438
                     /gene="Snx11"
                     /gene_synonym="4933439F10Rik; A930041K09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            439..534
                     /gene="Snx11"
                     /gene_synonym="4933439F10Rik; A930041K09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            535..747
                     /gene="Snx11"
                     /gene_synonym="4933439F10Rik; A930041K09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            748..2521
                     /gene="Snx11"
                     /gene_synonym="4933439F10Rik; A930041K09Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2176..2181
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Snx11"
                     /gene_synonym="4933439F10Rik; A930041K09Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2195
                     /gene="Snx11"
                     /gene_synonym="4933439F10Rik; A930041K09Rik"
                     /note="major polyA site"
     polyA_site      2501
                     /gene="Snx11"
                     /gene_synonym="4933439F10Rik; A930041K09Rik"
ORIGIN      
        1 accggggcac cggcgactca cccggaagga gaagccggta tcggactata tggtgcggtg
       61 ctggtggtgt cgctgtggag agctgctgct gctgctctca ggtgaaagga gtgggttacc
      121 gactgaaaaa tgagaacagc tgcttgatgg acgggacagg ttttctgtca ggcggaagag
      181 cttcctcgaa cacctatgtg cccttcccat gggcttgtgg tataggatgt tggagaacca
      241 agacctggag gaggtgatca cagttcgagt tcaggacccc agggtgcaga atgaaggctc
      301 ctggaattct tacgtggact ataagatatt cctccatacg aacagcaagg cttttaccgc
      361 caagacgtcc tgtgtgcggc ggcgctaccg tgagtttgtg tggctgagga agcagctgca
      421 gaggaacgcc ggcttggtgc ctgttccgga gcttcctggg aagtccactt tctttggcgg
      481 ctccgatgag ttcattgaga agcgacgtca aggtctccag catttccttg aaaaggtcct
      541 acagagcgtg gttcttctgt cagacagtca gttgcatctc ttcctccaaa gccagctctc
      601 ggtgcccgag attgaagcct gtgtccaggg ccggggcgcc atgacggtgt ccgatgccat
      661 tctttcctat gctatgtcca actgtggctg ggcccaggag gagaggcaga gcacctccca
      721 cttggctaaa ggagaccagc tcaacagttg ctgctttctt ccaagatcag ggcgcaggag
      781 ctccccttcg ccgcctctca gtgaggagaa ggagcagtta gagacgtggg ctccagtgat
      841 ggactctgag ggcccatcct cagaaagccc cacgctgctg cccagctcct ccttgcctgc
      901 ctgctgggat cctgcaagac cggaggaggg actctctgtg tcccagcctg cgagaagggc
      961 cgtggcagcg gaccaggctg ggccgatgga gcccactcag ctagacacag cgtgggacaa
     1021 gtgagcagtg gctgatctct ctgttctcct gtgtggtgga gaagatgcag cccaaggtca
     1081 catacaggag ggattgggga caaggcaggt gtagggcagg tcaggccgtt gaacatcttc
     1141 cactcaaatc tgctcaggtt tgttatgcag cgattgtggc tgtccgctgt atctcctctg
     1201 tgggagtaaa cgccacactg tgtttgtgag ttcagcacag ggcccagaag ctgctggttt
     1261 taaatattta ctttcccagg aggtgggttt cttcaggtgt ttgtttaaag agggctgtca
     1321 caggtgaatg gtttggggaa cccttcttgg cagagtttta gctgccttac tgaacattgt
     1381 cccaacagaa agttcctatc gttctccttc cttcttggca ggcttcaggt tttgctgcag
     1441 cccctggagc caacattttg gttgtgggag gctgacctct tgcctgcctc cttgtgtgga
     1501 cagagtggtg aagacgtatt cctcacctcc ttgcctttca gtaaatggcc acgatgtgac
     1561 tatttgttga ggtttccagc ctcttccaag accttgccag gctgagtggg gcctgagagc
     1621 ttgcaggcac ttaaagcttc ctggcaaagg ggccggccac aggcagaggg aaaggaacag
     1681 gtcagaggcg ttgctctggc agaggcggct cgggctgccc atcgtgtttc tgcggggttg
     1741 aggtgggctc ccttctttgt agatgccttt cctctcgtaa taacaactcc ttgcccccag
     1801 ggctctggct gccagggcct actgctgctt tcctgggaag ccgcaagttc agtcagtggg
     1861 gcacacaggc tttgtttcag cctggaagtg agggctctgg agatggagat aggagccata
     1921 agctctcctt cagacggtga ggcggctcct gcctcctgct actgaaatct gcagacagca
     1981 ggggcggctg cctggggggc tgggcaggct gggtgccggg cccaccttgg tgctgccgcg
     2041 ctgctcttag gtttgtgtgt gtttctctcc tggccatcca ccccggctgt gggtccaccc
     2101 cagccgaggg actcctggcc tgcattgcgg gattgtcagt ggcatttagt tgagagttga
     2161 ggggctttgg cctgaaataa actgcaagta tttaagactg ttgttgcaat ttgtgtctaa
     2221 caagctgtag cagggtagga gggagtgaga gctggcagga gttactttca taaatcatga
     2281 atttatcagc gtggaaataa cgccatagaa ctgtgcgctg gagctctctt gcattgtgtg
     2341 tgagactcaa gttcaccacc gcaggaggga cggttttcca gagagctagg atgtggctct
     2401 tctcacagag ctgggcatga accttgttag gtataattta cctgatgctg cttccgtctt
     2461 cgaagcctgt ctgaggtgcc aggtgctaaa agagaaataa agtttgttaa caggcagatg
     2521 c
//
