LOCUS       NM_178374               1354 bp    mRNA    linear   ROD 01-AUG-2024
DEFINITION  Mus musculus snurportin 1 (Snupn), mRNA.
ACCESSION   NM_178374
VERSION     NM_178374.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1354)
  AUTHORS   Liu,B., Jing,Z., Zhang,X., Chen,Y., Mao,S., Kaundal,R., Zou,Y.,
            Wei,G., Zang,Y., Wang,X., Lin,W., Di,M., Sun,Y., Chen,Q., Li,Y.,
            Xia,J., Sun,J., Lin,C.P., Huang,X. and Chi,T.
  TITLE     Large-scale multiplexed mosaic CRISPR perturbation in the whole
            organism
  JOURNAL   Cell 185 (16), 3008-3024 (2022)
   PUBMED   35870449
REFERENCE   2  (bases 1 to 1354)
  AUTHORS   Tamplin,O.J., Kinzel,D., Cox,B.J., Bell,C.E., Rossant,J. and
            Lickert,H.
  TITLE     Microarray analysis of Foxa2 mutant mouse embryos reveals novel
            gene expression and inductive roles for the gastrula organizer and
            its derivatives
  JOURNAL   BMC Genomics 9, 511 (2008)
   PUBMED   18973680
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1354)
  AUTHORS   Huber,J., Cronshagen,U., Kadokura,M., Marshallsay,C., Wada,T.,
            Sekine,M. and Luhrmann,R.
  TITLE     Snurportin1, an m3G-cap-specific nuclear import receptor with a
            novel domain structure
  JOURNAL   EMBO J 17 (14), 4114-4126 (1998)
   PUBMED   9670026
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC126257.4 and AC132406.4.
            
            On Aug 22, 2018 this sequence version replaced NM_178374.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC049638.1, AK002717.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-46                AC126257.4         166469-166514
            47-209              AC126257.4         172575-172737
            210-357             AC132406.4         203915-204062       c
            358-462             AC132406.4         196700-196804       c
            463-559             AC132406.4         196372-196468       c
            560-657             AC132406.4         191748-191845       c
            658-735             AC132406.4         188962-189039       c
            736-816             AC132406.4         186133-186213       c
            817-1354            AC132406.4         183859-184396       c
FEATURES             Location/Qualifiers
     source          1..1354
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 30.57 cM"
     gene            1..1354
                     /gene="Snupn"
                     /gene_synonym="0610031A09Rik; Rnut1; Snupn1"
                     /note="snurportin 1"
                     /db_xref="GeneID:66069"
                     /db_xref="MGI:MGI:1913319"
     exon            1..46
                     /gene="Snupn"
                     /gene_synonym="0610031A09Rik; Rnut1; Snupn1"
                     /inference="alignment:Splign:2.1.0"
     exon            47..209
                     /gene="Snupn"
                     /gene_synonym="0610031A09Rik; Rnut1; Snupn1"
                     /inference="alignment:Splign:2.1.0"
     CDS             52..1128
                     /gene="Snupn"
                     /gene_synonym="0610031A09Rik; Rnut1; Snupn1"
                     /note="RNA, U transporter 1"
                     /codon_start=1
                     /product="snurportin-1"
                     /protein_id="NP_848461.1"
                     /db_xref="CCDS:CCDS23214.1"
                     /db_xref="GeneID:66069"
                     /db_xref="MGI:MGI:1913319"
                     /translation="MEELSQALASSFSVSQELNSTAAPHPRLCQYKSKYSSLEQSERR
                     RQLLELQKSKRLDYVNHARRLAEDDWTGMESGEEENKKDEEEMDIDPSKKLPKRYANQ
                     LMLSEWLIDVPSDLGQEWIVVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGG
                     NRRNSTTAKDYTILDCIYSEVNQTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEE
                     GLGEKTKINPFKFVGLKNFPCTPESLCEVLSMDFPFEVDGLLFYHKQTHYSPGSTPLV
                     GWLRPYMVSDILGVAVPAGPLTTKPEYAGHQLQQIIEHKRSQEDTKEKLTHKASENGH
                     YELEHLSTPKLRNPPHSSESLMDN"
     exon            210..357
                     /gene="Snupn"
                     /gene_synonym="0610031A09Rik; Rnut1; Snupn1"
                     /inference="alignment:Splign:2.1.0"
     exon            358..462
                     /gene="Snupn"
                     /gene_synonym="0610031A09Rik; Rnut1; Snupn1"
                     /inference="alignment:Splign:2.1.0"
     exon            463..559
                     /gene="Snupn"
                     /gene_synonym="0610031A09Rik; Rnut1; Snupn1"
                     /inference="alignment:Splign:2.1.0"
     exon            560..657
                     /gene="Snupn"
                     /gene_synonym="0610031A09Rik; Rnut1; Snupn1"
                     /inference="alignment:Splign:2.1.0"
     exon            658..735
                     /gene="Snupn"
                     /gene_synonym="0610031A09Rik; Rnut1; Snupn1"
                     /inference="alignment:Splign:2.1.0"
     exon            736..816
                     /gene="Snupn"
                     /gene_synonym="0610031A09Rik; Rnut1; Snupn1"
                     /inference="alignment:Splign:2.1.0"
     exon            817..1354
                     /gene="Snupn"
                     /gene_synonym="0610031A09Rik; Rnut1; Snupn1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtcggcaca ggcactggcg gcgtgcgcga gtggtacgga cgtgcgggaa gatggaagaa
       61 ctgagccaag ccctggctag tagcttttct gtgtctcaag aactgaacag cacagctgcc
      121 ccccacccac gcctgtgtca atacaagtcc aagtacagtt ccttggagca gagtgagcgg
      181 cggcgccagc tactggagct gcagaaatcc aagcggttgg attatgtgaa ccatgccaga
      241 agactggctg aagatgactg gacaggtatg gagagtgggg aagaggaaaa caagaaagat
      301 gaagaggaaa tggacataga ccctagcaag aagttaccaa aacgctatgc taatcaattg
      361 atgctttctg agtggttaat tgacgtccct tcagatttgg ggcaagaatg gattgtggtt
      421 gtgtgtcctg ttgggaaaag agcccttatc gtggcctcca ggggttcaac aagtgcctac
      481 actaagagtg gctactgtgt caataggttt tcttcccttc tgcccggagg caacaggaga
      541 aactcaacaa cagccaaaga ctacaccatt ctggattgca tttacagtga ggtgaatcag
      601 acatactatg ttttggatgt gatgtgctgg cggggacatc ctttttatga ctgtcagact
      661 gatttccgat tctactggat gcattcaaag ttaccagaag aagaagggct tggagagaaa
      721 accaagatta atccttttaa gtttgtgggg ctaaagaatt tcccgtgtac ccctgagagc
      781 ctgtgtgagg tgctgtctat ggattttcct tttgaggtag atgggctgct cttctaccat
      841 aaacagaccc actatagccc tgggagtact cctctggtgg gttggctgcg cccctacatg
      901 gtgtcagata ttctgggtgt agctgttcca gctggcccac tgaccaccaa gccagaatac
      961 gctgggcacc agctccaaca gattattgag cacaagagga gccaggaaga cacaaaggag
     1021 aaactcacac acaaggcttc tgagaatggc cactatgagc tggagcacct gtctactccc
     1081 aagttaagaa atcctcccca cagctctgag agcctcatgg acaactaaac tggacagccc
     1141 aggaaagact ggggcagagg acagtgatga tagccattag tgaccttatt tcagagcatt
     1201 ctttccaaac ccaggttgcc ccctgtctgg aatgttggct cagactgttg tgggtaggtc
     1261 tcttttggat ggagttggaa tccaggtata tatgaatatc tcttgctgtg ttaggtatat
     1321 cttaggtcca cagtgtaaat atatgtgatt cttt
//
