LOCUS       NM_011482               1257 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus SNU13 homolog, small nuclear ribonucleoprotein
            (U4/U6.U5) (Snu13), mRNA.
ACCESSION   NM_011482 XM_489789
VERSION     NM_011482.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1257)
  AUTHORS   Wang,X., Li,Z.T., Yan,Y., Lin,P., Tang,W., Hasler,D., Meduri,R.,
            Li,Y., Hua,M.M., Qi,H.T., Lin,D.H., Shi,H.J., Hui,J., Li,J., Li,D.,
            Yang,J.H., Lin,J., Meister,G., Fischer,U. and Liu,M.F.
  TITLE     LARP7-Mediated U6 snRNA Modification Ensures Splicing Fidelity and
            Spermatogenesis in Mice
  JOURNAL   Mol Cell 77 (5), 999-1013 (2020)
   PUBMED   32017896
REFERENCE   2  (bases 1 to 1257)
  AUTHORS   Powles,N., Babbs,C., Ficker,M., Schimmang,T. and Maconochie,M.
  TITLE     Identification and analysis of genes from the mouse otic vesicle
            and their association with developmental subprocesses through in
            situ hybridization
  JOURNAL   Dev Biol 268 (1), 24-38 (2004)
   PUBMED   15031102
REFERENCE   3  (bases 1 to 1257)
  AUTHORS   Libby,B.J., Reinholdt,L.G. and Schimenti,J.C.
  TITLE     Positional cloning and characterization of Mei1, a
            vertebrate-specific gene required for normal meiotic chromosome
            synapsis in mice
  JOURNAL   Proc Natl Acad Sci U S A 100 (26), 15706-15711 (2003)
   PUBMED   14668445
REFERENCE   4  (bases 1 to 1257)
  AUTHORS   Kuhn,J.F., Tran,E.J. and Maxwell,E.S.
  TITLE     Archaeal ribosomal protein L7 is a functional homolog of the
            eukaryotic 15.5kD/Snu13p snoRNP core protein
  JOURNAL   Nucleic Acids Res 30 (4), 931-941 (2002)
   PUBMED   11842104
REFERENCE   5  (bases 1 to 1257)
  AUTHORS   Zhu,X. and Naz,R.K.
  TITLE     Fertilization antigen-1: cDNA cloning, testis-specific expression,
            and immunocontraceptive effects
  JOURNAL   Proc Natl Acad Sci U S A 94 (9), 4704-4709 (1997)
   PUBMED   9114055
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AK145391.1.
            
            On Apr 11, 2007 this sequence version replaced NM_011482.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK145391.1, AK169103.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164134 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1257              AK145391.1         3-1259
FEATURES             Location/Qualifiers
     source          1..1257
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 38.38 cM"
     gene            1..1257
                     /gene="Snu13"
                     /gene_synonym="FA-1; Fta1; Nhp2l1; Ssfa1"
                     /note="SNU13 homolog, small nuclear ribonucleoprotein
                     (U4/U6.U5)"
                     /db_xref="GeneID:20826"
                     /db_xref="MGI:MGI:893586"
     exon            1..112
                     /gene="Snu13"
                     /gene_synonym="FA-1; Fta1; Nhp2l1; Ssfa1"
                     /inference="alignment:Splign:2.1.0"
     CDS             110..496
                     /gene="Snu13"
                     /gene_synonym="FA-1; Fta1; Nhp2l1; Ssfa1"
                     /note="sperm specific antigen 1; fertilization antigen-1;
                     U4/U6.U5 tri-snRNP 15.5 kDa protein; high mobility
                     group-like nuclear protein 2 homolog 1; NHP2 non-histone
                     chromosome protein 2-like 1; U4/U6.U5 small nuclear
                     ribonucleoprotein SNU13"
                     /codon_start=1
                     /product="NHP2-like protein 1"
                     /protein_id="NP_035612.2"
                     /db_xref="CCDS:CCDS37154.1"
                     /db_xref="GeneID:20826"
                     /db_xref="MGI:MGI:893586"
                     /translation="MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATK
                     TLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIAC
                     SVTIKEGSQLKQQIQSIQQSIERLLV"
     exon            113..233
                     /gene="Snu13"
                     /gene_synonym="FA-1; Fta1; Nhp2l1; Ssfa1"
                     /inference="alignment:Splign:2.1.0"
     exon            234..1257
                     /gene="Snu13"
                     /gene_synonym="FA-1; Fta1; Nhp2l1; Ssfa1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      584..589
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Snu13"
                     /gene_synonym="FA-1; Fta1; Nhp2l1; Ssfa1"
                     /note="hexamer: ATTATA"
     polyA_site      599
                     /gene="Snu13"
                     /gene_synonym="FA-1; Fta1; Nhp2l1; Ssfa1"
                     /note="major polyA site"
ORIGIN      
        1 gcttcctgcc gcttctgaag tgatttccgc tcctttttcc tgcgcggcgt ttcagtccct
       61 cttgagttgg gctgtcgtcg agtcgcggcg agaccggcgc accgcagcca tgacagaggc
      121 tgatgtgaat ccgaaggcct atcccctcgc agatgcccac ctcaccaaga agctgctgga
      181 ccttgttcaa cagtcatgta actacaagca gcttcggaaa ggagccaatg aagccaccaa
      241 aaccctcaac agaggcatct ctgagttcat tgtgatggca gcagacgctg agcccttgga
      301 gatcatcctg cacctccctc tgctgtgcga agacaagaat gtcccctacg tatttgtgcg
      361 ctccaagcag gctttaggac gggcgtgtgg cgtctccagg ccagtcatcg cctgttctgt
      421 taccatcaaa gaaggctctc aactaaagca gcagatccag tccattcagc agtctattga
      481 aaggctcttg gtgtaggctg tggcctctgc cctttcctgt ctactgccac cctgtttgtg
      541 tatcatattg tctgttagca tgtactattt tcaaccagtt actattatat tgtactacat
      601 ctgcgtttta tatttttatt tttgtcttaa taaggttatt tttcaccatc tcttcattct
      661 cttctaccat aaaaaatgaa atgatagcta ggacaggtga aaggcagaat gtcaccattt
      721 aacaacagga agaaccagga gaaacttaag ccagggacag tgtatacttt catctgcaaa
      781 cttattccac tgcgcagggt aggatgacag tgaccctggt cccttgtgcc tttgatataa
      841 gagctccata aatgttactg acactgagga acttcctttg ggtagcagtc tctccctccc
      901 cttatcattt gaagaaattt gatgttgggc ctatgtccgg gagccattta ttaatgtcct
      961 gtgtgttttt gatgtatgta gtctgatatt ctcccatatc tggggcagta tcagtacaaa
     1021 gggattctgt ggagatcgtg gcaatttgct ggaacttaca gcagagacag tgctagcagg
     1081 aaacatcctc tccttggtaa atggggatgt cttattgtgg aaccatttga tggccgtgtt
     1141 gggagccctt atcctgttct tcccacagcg tgggtcaggt gtattctccc tcacatgaag
     1201 aaagtgataa catgttcatt attgagcatc ctaataaata tgttcatatt tcgtttt
//
