LOCUS       NM_027246                869 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus small nuclear ribonucleoprotein polypeptide F (Snrpf),
            mRNA.
ACCESSION   NM_027246 XM_892627 XM_914183
VERSION     NM_027246.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 869)
  AUTHORS   Kenney-Hunt,J.P., Vaughn,T.T., Pletscher,L.S., Peripato,A.,
            Routman,E., Cothran,K., Durand,D., Norgard,E., Perel,C. and
            Cheverud,J.M.
  TITLE     Quantitative trait loci for body size components in mice
  JOURNAL   Mamm Genome 17 (6), 526-537 (2006)
   PUBMED   16783635
REFERENCE   2  (bases 1 to 869)
  AUTHORS   McKee,A.E., Minet,E., Stern,C., Riahi,S., Stiles,C.D. and
            Silver,P.A.
  TITLE     A genome-wide in situ hybridization map of RNA-binding proteins
            reveals anatomically restricted expression in the developing mouse
            brain
  JOURNAL   BMC Dev Biol 5, 14 (2005)
   PUBMED   16033648
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 869)
  AUTHORS   Liu,Q., Fischer,U., Wang,F. and Dreyfuss,G.
  TITLE     The spinal muscular atrophy disease gene product, SMN, and its
            associated protein SIP1 are in a complex with spliceosomal snRNP
            proteins
  JOURNAL   Cell 90 (6), 1013-1021 (1997)
   PUBMED   9323129
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK008240.1, BC066015.1 and BQ748807.1.
            
            On or before Jul 17, 2009 this sequence version replaced
            XM_914183.3, XM_892627.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC066015.1, BU531527.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849380 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-37                AK008240.1         2-38
            38-398              BC066015.1         1-361
            399-447             BQ748807.1         371-419
            448-869             BC066015.1         412-833
FEATURES             Location/Qualifiers
     source          1..869
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 48.57 cM"
     gene            1..869
                     /gene="Snrpf"
                     /gene_synonym="2010013O18Rik; sm-F; SMF; snRNP-F"
                     /note="small nuclear ribonucleoprotein polypeptide F"
                     /db_xref="GeneID:69878"
                     /db_xref="MGI:MGI:1917128"
     exon            1..120
                     /gene="Snrpf"
                     /gene_synonym="2010013O18Rik; sm-F; SMF; snRNP-F"
                     /inference="alignment:Splign:2.1.0"
     CDS             118..378
                     /gene="Snrpf"
                     /gene_synonym="2010013O18Rik; sm-F; SMF; snRNP-F"
                     /note="sm protein F"
                     /codon_start=1
                     /product="small nuclear ribonucleoprotein F"
                     /protein_id="NP_081522.1"
                     /db_xref="CCDS:CCDS48672.1"
                     /db_xref="GeneID:69878"
                     /db_xref="MGI:MGI:1917128"
                     /translation="MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQL
                     ANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEEEEDGEMRE"
     exon            121..246
                     /gene="Snrpf"
                     /gene_synonym="2010013O18Rik; sm-F; SMF; snRNP-F"
                     /inference="alignment:Splign:2.1.0"
     exon            247..311
                     /gene="Snrpf"
                     /gene_synonym="2010013O18Rik; sm-F; SMF; snRNP-F"
                     /inference="alignment:Splign:2.1.0"
     exon            312..813
                     /gene="Snrpf"
                     /gene_synonym="2010013O18Rik; sm-F; SMF; snRNP-F"
                     /inference="alignment:Splign:2.1.0"
     regulatory      421..426
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Snrpf"
                     /gene_synonym="2010013O18Rik; sm-F; SMF; snRNP-F"
                     /note="hexamer: AATAAA"
     polyA_site      449
                     /gene="Snrpf"
                     /gene_synonym="2010013O18Rik; sm-F; SMF; snRNP-F"
                     /note="major polyA site"
     regulatory      514..519
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Snrpf"
                     /gene_synonym="2010013O18Rik; sm-F; SMF; snRNP-F"
                     /note="hexamer: ACTAAA"
     polyA_site      519
                     /gene="Snrpf"
                     /gene_synonym="2010013O18Rik; sm-F; SMF; snRNP-F"
     polyA_site      536
                     /gene="Snrpf"
                     /gene_synonym="2010013O18Rik; sm-F; SMF; snRNP-F"
     regulatory      688..693
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Snrpf"
                     /gene_synonym="2010013O18Rik; sm-F; SMF; snRNP-F"
                     /note="hexamer: AATAAA"
     polyA_site      711
                     /gene="Snrpf"
                     /gene_synonym="2010013O18Rik; sm-F; SMF; snRNP-F"
     regulatory      783..788
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Snrpf"
                     /gene_synonym="2010013O18Rik; sm-F; SMF; snRNP-F"
                     /note="hexamer: AATACA"
     polyA_site      807
                     /gene="Snrpf"
                     /gene_synonym="2010013O18Rik; sm-F; SMF; snRNP-F"
ORIGIN      
        1 gtcggccatt tctcttagcg cgggtcgctt ggttgtagcg gcagccgctc cggtcacgag
       61 gggcgggcag cggcggagtc ggcggctagc ggggtgcagc gctcgccggt ggtcgcgatg
      121 agtctacccc tcaaccccaa gccctttctc aatgggctga cagggaagcc agtgatggtg
      181 aaacttaagt ggggcatgga gtacaagggc tacctggtct ccgtggatgg ctacatgaac
      241 atgcagcttg caaatacaga agagtacata gatggggcgc tgtctggaca tctgggcgaa
      301 gttctaataa ggtgtaataa tgtcctctac atcagaggcg ttgaagaaga agaggaagat
      361 ggggaaatga gagaatagca tcttggattt ttttttttat atatatatgt atttctatac
      421 aataaagatt tggggttctt ttttttcaac ttgacttgtg gactatttaa tgcaaagcgc
      481 aaatgttgaa acaatggatg gataattctt agaactaaag ttttaaaagc ctctcagttt
      541 tattcaaggg actctttttt tttttttgta atcccaccgc tggtttaact gagacctcat
      601 aaaagcagca gtgttgttta aggtttccaa accacttgta acatccataa agttaaacat
      661 tttcttagta ttaatatata ttgtattaat aaatcattat ttctatattg acatagacta
      721 aataatgtat attatagcta agtcaaaaca tgaaaattga aataattatg gagataaaat
      781 acaatacaaa ttgatattta ggctgaagat gtaaaaaaaa aaaaaaaaaa aaaaaaaaaa
      841 aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
//
