LOCUS       NM_026095                654 bp    mRNA    linear   ROD 12-JUN-2024
DEFINITION  Mus musculus small nuclear ribonucleoprotein D3 (Snrpd3), mRNA.
ACCESSION   NM_026095
VERSION     NM_026095.5
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 654)
  AUTHORS   Scruggs,B.S., Michel,C.I., Ory,D.S. and Schaffer,J.E.
  TITLE     SmD3 regulates intronic noncoding RNA biogenesis
  JOURNAL   Mol Cell Biol 32 (20), 4092-4103 (2012)
   PUBMED   22869524
REFERENCE   2  (bases 1 to 654)
  AUTHORS   Endoh-Yamagami,S., Karkar,K.M., May,S.R., Cobos,I., Thwin,M.T.,
            Long,J.E., Ashique,A.M., Zarbalis,K., Rubenstein,J.L. and
            Peterson,A.S.
  TITLE     A mutation in the pericentrin gene causes abnormal interneuron
            migration to the olfactory bulb in mice
  JOURNAL   Dev Biol 340 (1), 41-53 (2010)
   PUBMED   20096683
REFERENCE   3  (bases 1 to 654)
  AUTHORS   Lu,B.C., Cebrian,C., Chi,X., Kuure,S., Kuo,R., Bates,C.M.,
            Arber,S., Hassell,J., MacNeil,L., Hoshi,M., Jain,S., Asai,N.,
            Takahashi,M., Schmidt-Ott,K.M., Barasch,J., D'Agati,V. and
            Costantini,F.
  TITLE     Etv4 and Etv5 are required downstream of GDNF and Ret for kidney
            branching morphogenesis
  JOURNAL   Nat Genet 41 (12), 1295-1302 (2009)
   PUBMED   19898483
  REMARK    Erratum:[Nat Genet. 2010 Apr;42(4):361]
REFERENCE   4  (bases 1 to 654)
  AUTHORS   Yang,X.C., Torres,M.P., Marzluff,W.F. and Dominski,Z.
  TITLE     Three proteins of the U7-specific Sm ring function as the molecular
            ruler to determine the site of 3'-end processing in mammalian
            histone pre-mRNA
  JOURNAL   Mol Cell Biol 29 (15), 4045-4056 (2009)
   PUBMED   19470752
REFERENCE   5  (bases 1 to 654)
  AUTHORS   Fronz,K., Otto,S., Kolbel,K., Kuhn,U., Friedrich,H., Schierhorn,A.,
            Beck-Sickinger,A.G., Ostareck-Lederer,A. and Wahle,E.
  TITLE     Promiscuous modification of the nuclear poly(A)-binding protein by
            multiple protein-arginine methyltransferases does not affect the
            aggregation behavior
  JOURNAL   J Biol Chem 283 (29), 20408-20420 (2008)
   PUBMED   18495660
REFERENCE   6  (bases 1 to 654)
  AUTHORS   Osipovich,A.B., Singh,A. and Ruley,H.E.
  TITLE     Post-entrapment genome engineering: first exon size does not affect
            the expression of fusion transcripts generated by gene entrapment
  JOURNAL   Genome Res 15 (3), 428-435 (2005)
   PUBMED   15741512
REFERENCE   7  (bases 1 to 654)
  AUTHORS   Miranda,T.B., Khusial,P., Cook,J.R., Lee,J.H., Gunderson,S.I.,
            Pestka,S., Zieve,G.W. and Clarke,S.
  TITLE     Spliceosome Sm proteins D1, D3, and B/B' are asymmetrically
            dimethylated at arginine residues in the nucleus
  JOURNAL   Biochem Biophys Res Commun 323 (2), 382-387 (2004)
   PUBMED   15369763
REFERENCE   8  (bases 1 to 654)
  AUTHORS   Charroux,B., Pellizzoni,L., Perkinson,R.A., Yong,J., Shevchenko,A.,
            Mann,M. and Dreyfuss,G.
  TITLE     Gemin4. A novel component of the SMN complex that is found in both
            gems and nucleoli
  JOURNAL   J Cell Biol 148 (6), 1177-1186 (2000)
   PUBMED   10725331
REFERENCE   9  (bases 1 to 654)
  AUTHORS   Liu,Q., Fischer,U., Wang,F. and Dreyfuss,G.
  TITLE     The spinal muscular atrophy disease gene product, SMN, and its
            associated protein SIP1 are in a complex with spliceosomal snRNP
            proteins
  JOURNAL   Cell 90 (6), 1013-1021 (1997)
   PUBMED   9323129
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC144461.33.
            
            On Jan 10, 2022 this sequence version replaced NM_026095.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CB205709.1, CK780770.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-108               AC144461.33        131432-131539
            109-255             AC144461.33        132728-132874
            256-448             AC144461.33        145591-145783
            449-654             AC144461.33        148675-148880
FEATURES             Location/Qualifiers
     source          1..654
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 38.55 cM"
     gene            1..654
                     /gene="Snrpd3"
                     /gene_synonym="1700043E15Rik; 2310009E13Rik; SMD3"
                     /note="small nuclear ribonucleoprotein D3"
                     /db_xref="GeneID:67332"
                     /db_xref="MGI:MGI:1914582"
     exon            1..108
                     /gene="Snrpd3"
                     /gene_synonym="1700043E15Rik; 2310009E13Rik; SMD3"
                     /inference="alignment:Splign:2.1.0"
     exon            109..255
                     /gene="Snrpd3"
                     /gene_synonym="1700043E15Rik; 2310009E13Rik; SMD3"
                     /inference="alignment:Splign:2.1.0"
     exon            256..448
                     /gene="Snrpd3"
                     /gene_synonym="1700043E15Rik; 2310009E13Rik; SMD3"
                     /inference="alignment:Splign:2.1.0"
     exon            449..654
                     /gene="Snrpd3"
                     /gene_synonym="1700043E15Rik; 2310009E13Rik; SMD3"
                     /inference="alignment:Splign:2.1.0"
     regulatory      630..635
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Snrpd3"
                     /gene_synonym="1700043E15Rik; 2310009E13Rik; SMD3"
                     /note="hexamer: AATAAA"
     polyA_site      654
                     /gene="Snrpd3"
                     /gene_synonym="1700043E15Rik; 2310009E13Rik; SMD3"
                     /note="major polyA site"
ORIGIN      
        1 attctgggag cgcgtggtat tcgtgagagt cgggccggtc gttctctcgc cttcgccttc
       61 taacgtttgt gccagaaccg gaaaaaaaat aaagcctgca gttaattgcc cgggaagagt
      121 cctgccaaga tgtctattgg tgtgccgatt aaagtcttgc acgaggctga aggccacata
      181 gtgacgtgtg agaccaacac cggggaagta taccgaggga agctcattga agcagaggac
      241 aacatgaact gtcagatgtc caacatcaca gtcacataca gagatggtcg agtggcacag
      301 ctggaacagg tatatatacg tggcagcaag atccgatttc tgattttgcc tgacatgctg
      361 aaaaatgcac ccatgttaaa gagcatgaaa aataaaaacc aaggctcagg ggccggcaga
      421 ggaaaagctg ctatcctgaa ggcccaagtg gccgcacgag ggagaggacg tgggatggga
      481 cgtgggaaca tcttccagaa gcgaagataa tattctccat tgaagagaac gttgtccttt
      541 cttctctttg attattgcag gggttttggg gggagggggt attacatgtg catatgtctt
      601 agattttctt ttgataaact gttaagctaa ataaaatttg gttgttttgt ggtt
//
