LOCUS       NM_026943                511 bp    mRNA    linear   ROD 14-JUN-2024
DEFINITION  Mus musculus small nuclear ribonucleoprotein D2 (Snrpd2), mRNA.
ACCESSION   NM_026943 XM_133225
VERSION     NM_026943.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 511)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   2  (bases 1 to 511)
  AUTHORS   Charroux,B., Pellizzoni,L., Perkinson,R.A., Yong,J., Shevchenko,A.,
            Mann,M. and Dreyfuss,G.
  TITLE     Gemin4. A novel component of the SMN complex that is found in both
            gems and nucleoli
  JOURNAL   J Cell Biol 148 (6), 1177-1186 (2000)
   PUBMED   10725331
REFERENCE   3  (bases 1 to 511)
  AUTHORS   Liu,Q., Fischer,U., Wang,F. and Dreyfuss,G.
  TITLE     The spinal muscular atrophy disease gene product, SMN, and its
            associated protein SIP1 are in a complex with spliceosomal snRNP
            proteins
  JOURNAL   Cell 90 (6), 1013-1021 (1997)
   PUBMED   9323129
REFERENCE   4  (bases 1 to 511)
  AUTHORS   Mitsuda,T., Eisenberg,R.A. and Cohen,P.L.
  TITLE     The murine Sm-D autoantigen: multiple genes, genetic polymorphism,
            evolutionary conservation and lack of intervening sequences in the
            coding region
  JOURNAL   J Autoimmun 5 (3), 277-287 (1992)
   PUBMED   1388635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC145199.3.
            
            On Mar 30, 2023 this sequence version replaced NM_026943.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CK790068.1, CF739575.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-76                AC145199.3         59968-60043         c
            77-256              AC145199.3         58465-58644         c
            257-511             AC145199.3         57132-57386         c
FEATURES             Location/Qualifiers
     source          1..511
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 9.46 cM"
     gene            1..511
                     /gene="Snrpd2"
                     /gene_synonym="1810009A06Rik; SMD2"
                     /note="small nuclear ribonucleoprotein D2"
                     /db_xref="GeneID:107686"
                     /db_xref="MGI:MGI:98345"
     exon            1..76
                     /gene="Snrpd2"
                     /gene_synonym="1810009A06Rik; SMD2"
                     /inference="alignment:Splign:2.1.0"
     CDS             75..431
                     /gene="Snrpd2"
                     /gene_synonym="1810009A06Rik; SMD2"
                     /note="sm-D2; snRNP core protein D2"
                     /codon_start=1
                     /product="small nuclear ribonucleoprotein Sm D2"
                     /protein_id="NP_081219.1"
                     /db_xref="CCDS:CCDS20892.1"
                     /db_xref="GeneID:107686"
                     /db_xref="MGI:MGI:98345"
                     /translation="MSLLNKPKSEMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLI
                     NCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLR
                     GDSVIVVLRNPLIAGK"
     exon            77..256
                     /gene="Snrpd2"
                     /gene_synonym="1810009A06Rik; SMD2"
                     /inference="alignment:Splign:2.1.0"
     exon            257..511
                     /gene="Snrpd2"
                     /gene_synonym="1810009A06Rik; SMD2"
                     /inference="alignment:Splign:2.1.0"
     regulatory      484..489
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Snrpd2"
                     /gene_synonym="1810009A06Rik; SMD2"
                     /note="hexamer: AATAAA"
     polyA_site      511
                     /gene="Snrpd2"
                     /gene_synonym="1810009A06Rik; SMD2"
                     /note="major polyA site"
ORIGIN      
        1 cttctcgccc tgtacgccaa aggctggagc aacgcgcttg gaggcgggag tgatctgcga
       61 gcgaaaccta caccatgagt ctcctcaata aacccaagag tgagatgacc ccagaggagc
      121 tgcagaagcg ggaggaggag gaattcaaca caggtcccct ctcagtgctc acgcagtcgg
      181 tcaagaacaa cacgcaagtg ctcattaact gtcgcaacaa caagaagctg ctgggccggg
      241 tgaaggcctt tgacaggcac tgcaacatgg tgctggaaaa tgtgaaggag atgtggactg
      301 aggttcccaa gagcggcaag ggcaagaaga aatccaagcc tgtcaacaag gaccgctaca
      361 tctccaagat gttcctgcgc ggggactcgg tcatcgtggt gctgcggaac ccactcatcg
      421 ctggcaagta gagcctgctc cctgccctgc gaaggcctgc agaaccctgc ccagtgggcg
      481 agaaataaaa ccctgtgctt tttggttttt a
//
