LOCUS       NM_021336               1250 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus small nuclear ribonucleoprotein polypeptide A'
            (Snrpa1), transcript variant 1, mRNA.
ACCESSION   NM_021336 XM_919503
VERSION     NM_021336.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1250)
  AUTHORS   Jin,L., Chen,Y., Crossman,D.K., Datta,A., Vu,T., Mobley,J.A.,
            Basu,M.K., Scarduzio,M., Wang,H., Chang,C. and Datta,P.K.
  TITLE     STRAP regulates alternative splicing fidelity during lineage
            commitment of mouse embryonic stem cells
  JOURNAL   Nat Commun 11 (1), 5941 (2020)
   PUBMED   33230114
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1250)
  AUTHORS   Baumer,D., Lee,S., Nicholson,G., Davies,J.L., Parkinson,N.J.,
            Murray,L.M., Gillingwater,T.H., Ansorge,O., Davies,K.E. and
            Talbot,K.
  TITLE     Alternative splicing events are a late feature of pathology in a
            mouse model of spinal muscular atrophy
  JOURNAL   PLoS Genet 5 (12), e1000773 (2009)
   PUBMED   20019802
REFERENCE   3  (bases 1 to 1250)
  AUTHORS   Stefan,M., Claiborn,K.C., Stasiek,E., Chai,J.H., Ohta,T.,
            Longnecker,R., Greally,J.M. and Nicholls,R.D.
  TITLE     Genetic mapping of putative Chrna7 and Luzp2 neuronal
            transcriptional enhancers due to impact of a transgene-insertion
            and 6.8 Mb deletion in a mouse model of Prader-Willi and Angelman
            syndromes
  JOURNAL   BMC Genomics 6, 157 (2005)
   PUBMED   16280085
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1250)
  AUTHORS   McKee,A.E., Minet,E., Stern,C., Riahi,S., Stiles,C.D. and
            Silver,P.A.
  TITLE     A genome-wide in situ hybridization map of RNA-binding proteins
            reveals anatomically restricted expression in the developing mouse
            brain
  JOURNAL   BMC Dev Biol 5, 14 (2005)
   PUBMED   16033648
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 1250)
  AUTHORS   Antica,M., Kusic,B., Hranilovic,D., Dietz,A.B. and Vuk-Pavlovic,S.
  TITLE     Cloning the cDNA for murine U2 snRNP-A' gene and its differential
            expression in lymphocyte development
  JOURNAL   Immunol Lett 82 (3), 217-223 (2002)
   PUBMED   12036604
  REMARK    GeneRIF: Cloning the cDNA for murine U2 snRNP-A' gene and its
            differential expression in lymphocyte development
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC148973.4 and AK153502.1.
            
            On Apr 30, 2009 this sequence version replaced NM_021336.3.
            
            Transcript Variant: This variant (1) represents the longer
            transcript.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK153502.1, AK151800.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-208               AC148973.4         178844-179051
            209-1244            AK153502.1         2-1037
            1245-1250           AC148973.4         193090-193095
FEATURES             Location/Qualifiers
     source          1..1250
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 35.47 cM"
     gene            1..1250
                     /gene="Snrpa1"
                     /gene_synonym="1500015N06Rik"
                     /note="small nuclear ribonucleoprotein polypeptide A'"
                     /db_xref="GeneID:68981"
                     /db_xref="MGI:MGI:1916231"
     exon            1..357
                     /gene="Snrpa1"
                     /gene_synonym="1500015N06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            358..505
                     /gene="Snrpa1"
                     /gene_synonym="1500015N06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            506..584
                     /gene="Snrpa1"
                     /gene_synonym="1500015N06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            585..631
                     /gene="Snrpa1"
                     /gene_synonym="1500015N06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            632..734
                     /gene="Snrpa1"
                     /gene_synonym="1500015N06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            735..814
                     /gene="Snrpa1"
                     /gene_synonym="1500015N06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            815..890
                     /gene="Snrpa1"
                     /gene_synonym="1500015N06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            891..984
                     /gene="Snrpa1"
                     /gene_synonym="1500015N06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            985..1250
                     /gene="Snrpa1"
                     /gene_synonym="1500015N06Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1223..1228
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Snrpa1"
                     /gene_synonym="1500015N06Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1243
                     /gene="Snrpa1"
                     /gene_synonym="1500015N06Rik"
                     /note="major polyA site"
ORIGIN      
        1 ttcactgacg tgagacagag catccctcgc gtgttcttat cttttggatt aaaaaaactg
       61 gaatctgggc tccccacact cccaggcacg ctcaagccca gaacccagaa gcaaagacac
      121 gggggctacg tcttcgattg ctttagcctg gcggtcgagc tgcgcgggga tacgattggt
      181 gctgtctggc ggcgaggcgc ggtgcactgt gggacacggc actggcggga ggcgcaggct
      241 ggtgtcggag gtgagggtcc gcgggctgcg acaggatggt gaagctgacg gcggagctga
      301 tcgagcaggc ggcgcagtac acaaatgccg tacgggaccg tgaactggac ctccggggat
      361 ataaaattcc ggttattgag aatctgggtg ccaccttaga ccagtttgat gctattgatt
      421 tttctgacaa tgagatccgg aaactggacg gtttcccttt gttgagaaga ctgaaaacat
      481 tattagtgaa caacaacaga atttgccgta taggtgaggg acttgaccag gctcttccct
      541 gtctgacaga gctcatcctc accaacaaca gtctagtgga actgggtgat ctggacccgt
      601 tggcatctct caaatcactg acatatctaa gcatcctaag aaaccctgta accaataaga
      661 agcattatcg actttatgtg atttataaag ttccacaagt cagagtactg gactttcaga
      721 aagtgaaact caaagagcgt caggaagcag agaaaatgtt caagggcaaa cggggtgcac
      781 agcttgcaaa ggatattgcc aggagaagca aaacttttaa tccaggtgct ggtttgccaa
      841 ctgacaaaaa gaaaggcggg ccgtctgcag gggatgtgga agcaatcaag aatgccatcg
      901 caaacgcgtc gacgctggct gaggttgaga ggctgaaggg cttgctgcag tcgggccaga
      961 tacctggcag agagcgcaga tcagggccga gtgatgaggg tgaagaagag atagaagacg
     1021 acacagtcac aaatgggtcc tgagctctgc cagatgctct gataagctct cttgggacaa
     1081 gtcttgcatt ttgagcatgg agtaacaacc ttgcttgtat cagcaacgtg gactctcagc
     1141 tttgctgaat gttcagaacg actggtgata attttttaat aggaaccttg aaataacaat
     1201 gccagttttc tacaaatggt aaaataaagg cgacttactg tgctgccgga
//
