LOCUS       NM_026382               1789 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus small nuclear ribonucleoprotein 48 (U11/U12)
            (Snrnp48), mRNA.
ACCESSION   NM_026382
VERSION     NM_026382.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1789)
  AUTHORS   Turunen,J.J., Will,C.L., Grote,M., Luhrmann,R. and Frilander,M.J.
  TITLE     The U11-48K protein contacts the 5' splice site of U12-type introns
            and the U11-59K protein
  JOURNAL   Mol Cell Biol 28 (10), 3548-3560 (2008)
   PUBMED   18347052
  REMARK    GeneRIF: Using site-specific cross-linking, we detected an
            interaction between the U11-48K protein and U12-type 5' splice
            sites (5'ss).
REFERENCE   2  (bases 1 to 1789)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY263553.1, AK012916.1, BY430458.1 and AK004216.1.
            
            On Jul 23, 2005 this sequence version replaced NM_026382.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK018315.1, AK012916.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164132
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-6                 BY263553.1         4-9
            7-1037              AK012916.1         2-1032
            1038-1175           BY430458.1         257-394
            1176-1789           AK004216.1         506-1119
FEATURES             Location/Qualifiers
     source          1..1789
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="13"
                     /map="13 18.04 cM"
     gene            1..1789
                     /gene="Snrnp48"
                     /gene_synonym="1110050F08Rik; 6530403A03Rik; C6orf151"
                     /note="small nuclear ribonucleoprotein 48 (U11/U12)"
                     /db_xref="GeneID:67797"
                     /db_xref="MGI:MGI:1915047"
     exon            1..190
                     /gene="Snrnp48"
                     /gene_synonym="1110050F08Rik; 6530403A03Rik; C6orf151"
                     /inference="alignment:Splign:2.1.0"
     CDS             35..1048
                     /gene="Snrnp48"
                     /gene_synonym="1110050F08Rik; 6530403A03Rik; C6orf151"
                     /note="U11/U12 snRNP 48 kDa protein"
                     /codon_start=1
                     /product="U11/U12 small nuclear ribonucleoprotein 48 kDa
                     protein"
                     /protein_id="NP_080658.2"
                     /db_xref="CCDS:CCDS36635.1"
                     /db_xref="GeneID:67797"
                     /db_xref="MGI:MGI:1915047"
                     /translation="METEPPPLEERRRLQEELSEFVESCCRTLEEVTASLGWSLDQLD
                     PGDEAEAEDEIAICPYDSNHRMPKSSLTKHMESCRLRKLGYTKEEENEMYNPTFFYEN
                     LKIPSVTLNKDSQFQIIKQARTTAGKDGDCYSQRMYSSVPVEVPLNHKRSVCDLTQTD
                     RLALYDFVIEETKKKRSGPQVIENDSDLFVDLAAKVNQDNSRKSPKSYLEILAEVRDY
                     KRRRQSYRAKNVHITKKSYTEVIRDVIKVHMEELSSHWQEEQGRAGDAAEKNEERRSA
                     SVDSRQSGGSYLDVESSRHRRARSRSPHKRKRNKDKSSESRRRKERDGERHHSHKRRK
                     QKI"
     exon            191..304
                     /gene="Snrnp48"
                     /gene_synonym="1110050F08Rik; 6530403A03Rik; C6orf151"
                     /inference="alignment:Splign:2.1.0"
     exon            305..365
                     /gene="Snrnp48"
                     /gene_synonym="1110050F08Rik; 6530403A03Rik; C6orf151"
                     /inference="alignment:Splign:2.1.0"
     exon            366..440
                     /gene="Snrnp48"
                     /gene_synonym="1110050F08Rik; 6530403A03Rik; C6orf151"
                     /inference="alignment:Splign:2.1.0"
     exon            441..629
                     /gene="Snrnp48"
                     /gene_synonym="1110050F08Rik; 6530403A03Rik; C6orf151"
                     /inference="alignment:Splign:2.1.0"
     exon            630..751
                     /gene="Snrnp48"
                     /gene_synonym="1110050F08Rik; 6530403A03Rik; C6orf151"
                     /inference="alignment:Splign:2.1.0"
     exon            752..840
                     /gene="Snrnp48"
                     /gene_synonym="1110050F08Rik; 6530403A03Rik; C6orf151"
                     /inference="alignment:Splign:2.1.0"
     exon            841..999
                     /gene="Snrnp48"
                     /gene_synonym="1110050F08Rik; 6530403A03Rik; C6orf151"
                     /inference="alignment:Splign:2.1.0"
     exon            1000..1789
                     /gene="Snrnp48"
                     /gene_synonym="1110050F08Rik; 6530403A03Rik; C6orf151"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1158..1163
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Snrnp48"
                     /gene_synonym="1110050F08Rik; 6530403A03Rik; C6orf151"
                     /note="hexamer: AATAAA"
     polyA_site      1178
                     /gene="Snrnp48"
                     /gene_synonym="1110050F08Rik; 6530403A03Rik; C6orf151"
                     /note="major polyA site"
     regulatory      1761..1766
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Snrnp48"
                     /gene_synonym="1110050F08Rik; 6530403A03Rik; C6orf151"
                     /note="hexamer: ATTAAA"
     polyA_site      1783
                     /gene="Snrnp48"
                     /gene_synonym="1110050F08Rik; 6530403A03Rik; C6orf151"
ORIGIN      
        1 ttccgcctct tcctgcctga ggtgagctgc catcatggag accgaacctc ctcctctgga
       61 agagcggcgt cggctccagg aggagctgag cgagtttgtg gagagctgct gccggacgct
      121 ggaggaggtg acggcgtccc tgggatggag cctggatcag ctggaccccg gggacgaggc
      181 ggaggccgag gatgaaatcg ccatatgtcc ttatgattcc aatcatcgca tgcccaaatc
      241 atcactaaca aagcacatgg aatcttgcag attgaggaaa ctgggatata ccaaagagga
      301 agagaatgaa atgtacaatc ctactttttt ctatgaaaat ttgaagattc cttcagttac
      361 tttgaataag gattcacagt tccagataat taaacaagct aggactacag ctgggaaaga
      421 tggtgattgt tatagccaga gaatgtattc ttcagtgcct gttgaagttc ctctgaatca
      481 caaacgatct gtttgtgacc tcacacaaac ggatcgcctt gccctgtatg attttgtcat
      541 tgaggagaca aagaaaaagc gctctggtcc tcaagtcatt gaaaatgaca gtgacctgtt
      601 tgtagacttg gctgctaaag tcaatcaaga taatagccga aaaagtccaa aatcttacct
      661 ggaaatcctg gcagaagtga gagattataa aagaagacgc cagtcctaca gagctaagaa
      721 tgttcacata accaagaaat catacactga ggtgatccgg gatgtgatca aggtgcacat
      781 ggaggagctg agcagccact ggcaggaaga gcaggggaga gcaggagacg ctgctgagaa
      841 gaatgaagaa aggcggtcag cttcagtaga ttcacggcag tctggtggaa gttatttgga
      901 tgttgaaagt tcacgacata gaagggctcg gagtaggagc ccacacaaac gaaaaagaaa
      961 taaagataaa agttctgagt caagaagaag aaaagagagg gatggagaaa gacatcatag
     1021 tcataaaaga agaaagcaaa aaatataaac agactgtaaa tgcattaatt atgcttatga
     1081 aataaatact gatattttaa ttataatctt tgcatagggg aaaatggctg ttatgattgg
     1141 gtaatgctta ttattttaat aaatgcttca aaccatgagt caaaattgta cactacacac
     1201 ttagattttc cttatatttc aatagggtct tattactatt tgtttcattc ttttggtcat
     1261 gtatataatc agttttcttt ttcacaaatc agtacttgag ataggtaaat tacacatgaa
     1321 aacattctca ttgtaaaaag ttaaagatga ggttagattt caccctggca gtgactgctc
     1381 tttctcactt cattggaggg ttgtatgtga cagggaaagc actcttgagt gactttctga
     1441 atggggagtg tcctggctaa gtagactatg tgtaggtatt catagactaa attactatgt
     1501 ttgcattcaa aggaaaacct ttatctatgt tcacacggtt agatctttaa aatgtaatgt
     1561 taaaggggaa ttgtgagcgg taggtatgtt taagttagca ggtgtatatg tatatgatta
     1621 tattttcaaa gtttcactag aaaccattct aaattcctaa ttatatttgg gaaaggattt
     1681 tttggggtac ataacagggt tagggggttg gtcaaaggaa actttggttc tgtaagtaat
     1741 atatcatgtt ttgtttgata attaaaattg ctagtatttt gtatgttgt
//
