LOCUS       XM_030251169            5216 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus syntaphilin (Snph), transcript variant X4,
            mRNA.
ACCESSION   XM_030251169
VERSION     XM_030251169.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000068.8) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_030251169.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5216
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="2"
     gene            1..5216
                     /gene="Snph"
                     /gene_synonym="6430515A01; mKIAA0374"
                     /note="syntaphilin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 mRNAs, 16 ESTs, 414
                     long SRA reads, 7 Proteins, and 99% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     17 samples with support for all annotated introns"
                     /db_xref="GeneID:241727"
                     /db_xref="MGI:MGI:2139270"
     CDS             732..2351
                     /gene="Snph"
                     /gene_synonym="6430515A01; mKIAA0374"
                     /codon_start=1
                     /product="syntaphilin isoform X2"
                     /protein_id="XP_030107029.1"
                     /db_xref="GeneID:241727"
                     /db_xref="MGI:MGI:2139270"
                     /translation="MPGSGPSERMTWPGPALPTPPTTRPLSSAPGTPPIPPLTRTRSL
                     MAMSLQGSRRASAGSRRRTSPPVSVRDAYGTSSLSSSSNSGSCKGSDSSPTPRRSMKY
                     TLCSDNHGIKPPTPEQYLTPLQQKEVCIRHLKARLKDTQDRLQDRDTEIDDLKTQLSR
                     MQEDWIEEECHRVEAQLALKEARKEIRQLKQVIDTVKNNLIDKDKGLQKYFVDINIQN
                     KKLETLLHSMEVAQNGVAKEEGTGESAGGSPARSLTRSSTYTKLSDPAVCGDRQPGDP
                     SNTSAEDGADSGYVAADDTLSRTDALEASSLLSSGVDCGLEEASLHSSFNLGPRFPAS
                     NTYEKLLCGMEAGVQVSCMQERAIQTDFVQYQPDLNTILEKVGQAQVCGSVLKDRHSE
                     LDPHPSGPRDPDSAVVVTVGDELEAPEPITCGPATHRPAVNSNPGLPVSVVCPVEEEE
                     EEAAAATTTEKEPKSYWSRHYIVDLLAVVVPAVPTVAWLCRSQRRQGQPIYNISSLLR
                     GCCTVALHSIRRISCRSLGQPSSSTAGGSQL"
ORIGIN      
        1 cccctccatc cacctctcct tccccgccct ccacctctcc ctccccgcag ccccagcccc
       61 agcaagcacc cgctagccac cttcagctgg ggctcgggag agcaatccgg ctgccctcct
      121 gggggcagcc caaaccatgg aagccttcgc aggttgctga tcaccgccag gcggctgctg
      181 cagcgactgc agaggcgctg cgccaagcgg cgcgggagtc gtgcgagccg gccggactgc
      241 ggagggcgag tggacccagc caggaagccc cgaaccacgt gccaactggg aaggtgatgg
      301 tcagcgagac cagcccggcc tattctgggg ctcctactcc tgcaccagga gtccttcgac
      361 ctgcagcccc tgccaaagag ggaggactgg atgtgggagg caggatctga ggggcaggga
      421 cctggggaga agcaggcttt gctggtagat tagaagatcc tttttgctgc actggtggac
      481 aggagggtcc ttgtctgact gtgacagggt cttcagccct ctgggcacct tcactgtgac
      541 ctggaagatc tggggttgga ctgagacttc tagccacccc tgaggctcta aggactgaga
      601 ctttaaactg gggttagcag cctgtgccaa gcccccactg aattcactgg tggaggcagc
      661 cacctgcagc ctagcctata ggccctcgct tgattctggg gtgtcgtgtc tgaagggcaa
      721 gaggagaagc catgccaggc agtggcccca gtgagaggat gacatggccc ggccctgccc
      781 tccctacgcc ccccacaacc cgccctcttt cctcagcccc gggaacaccg cccattccgc
      841 cgctcaccag gacccgcagc ctcatggcca tgtccctgca gggaagtaga cgagcctctg
      901 ccggatctcg caggcgcacc tctccacctg tgagtgtgcg ggacgcctac ggcacctctt
      961 ccctcagcag cagcagcaac tctggctcct gcaagggcag tgacagcagc cccacaccga
     1021 ggcgctccat gaagtacaca ctatgcagcg acaatcacgg catcaagcct cccaccccag
     1081 aacagtatct gactccactg caacagaagg aggtttgcat ccggcacctg aaggcccggc
     1141 tcaaggacac acaggaccgg ctccaggata gggacacgga gatcgatgac cttaagacgc
     1201 agctgtcccg catgcaagag gactggattg aggaggagtg ccaccgcgta gaagcacagc
     1261 tggccctgaa agaggcccgc aaggagatcc ggcagctcaa gcaggtcatc gacactgtca
     1321 agaacaacct gattgacaag gacaaggggc tgcagaagta ctttgtggac atcaatatcc
     1381 agaacaagaa gctggagacc ttgctgcaca gcatggaggt ggcccagaat ggagtcgcca
     1441 aggaggaagg aacaggggag tcagcaggtg ggtctcctgc acggtccctc acccgcagct
     1501 ccacctacac caagctgagt gacccagccg tctgtggtga ccgccagcca ggggatccct
     1561 ccaacacctc tgccgaggat ggagctgata gtggatatgt ggctgccgat gacaccctga
     1621 gtcggacgga cgccctggag gccagtagcc tactgtcatc aggagtggac tgtggccttg
     1681 aggaagcctc gctgcacagc tccttcaacc tgggcccccg cttccctgcc agcaacacct
     1741 acgagaagct gctgtgcggc atggaggctg gtgtgcaggt cagctgcatg caggagcggg
     1801 ccatccagac agactttgtg cagtaccagc ctgacctgaa caccatcctg gagaaagtgg
     1861 gccaggctca ggtgtgcggt tcagtcctca aagacaggca ctcagagctg gatccccacc
     1921 cttcagggcc cagagaccct gactcagcag tggtagtcac agtaggtgac gagcttgagg
     1981 ccccagagcc catcacctgt gggccagcca cacaccggcc tgcagtcaac tctaacccag
     2041 gactgcccgt gagtgtggtg tgtcccgtgg aagaggagga ggaggaggca gccgctgcca
     2101 ccaccaccga aaaggaaccc aagagttact ggagccgcca ctacatcgtg gatctgctgg
     2161 ctgtggtagt gccagctgtg ccaacagtgg cctggctctg ccgctcccag cggcgtcagg
     2221 gccagcccat ttacaacatc agctccctgc tgcggggttg ctgcacggtg gccttgcact
     2281 ccatccgtag gatcagctgc cgctcactgg gccagccgag ctccagcaca gccggtggct
     2341 ctcagctctg aggctgccgg ctctccactc ctggcagcct gaccattgat tgtaggatgc
     2401 catttgctgc cccacaccca cacccacacc catccccttt tggcttcctc ttatatactt
     2461 tcaggtctgg aatagcgccc caacccaaga tgtcaatagt gtcagggatt cagaaagtca
     2521 tcccaaaact tggagagaaa aggttaaaat ggctaattga agagggagaa actgctaaga
     2581 gcttcccccc tctgtcccct ctgtccaccc agactttaga caaggcaggc cctgctcaaa
     2641 atgtctctgg ctgtattgat ctgaggatcc tcccctcttt tgaaccattc cttccatcac
     2701 ctggcccacc ccatgccttc tcttccaggc caccccttgc ccctctcctt gggctcccgg
     2761 accagtatta cctcctcaaa tggaggcagc caggacccag aacacagaga gccactccca
     2821 gcagggtctg gcttccctgg tcccactgag gctccagctc tcctcccttg ccctgggatg
     2881 caaaagtatg gtccagctgg aatgaccagc tcaggcagga gggtaggttc tgtgtctgtc
     2941 tgtctgtcct cttggcttct gggtgtgtta gatctttgtg agatgtccaa tgcccatcac
     3001 tactaacacg cttaccatgg gagtggaggg agcccttacc caagccccag cttcctttgg
     3061 gcaaatctgc cagcacagag aaggcaaggc tagcagctct agggcaccct tcaccttctg
     3121 agatgagtcc acctcatctg tagcctagag gtacctcagt gagttgggaa agtcagaggc
     3181 cacttaccca ggctccattg gctccaagcc ctgactacat ttgcactcag tttcctgaag
     3241 gactttgttt cctgcccacc ccagaaaccc caggctgctt gttttctggg acgagggctt
     3301 ctctcatgga gctgacttca gaggaatatg gccatcaggg ggcacctcca gatgggtttc
     3361 tgaagtcaca tcgtctgcct gtctatgcca aagcagagtc tctgagtgtg cttcccaagt
     3421 aggggcatgg ccaggtggtg ggagcctgtc tgtgctgctc ctggtccagg ccccgtcagc
     3481 ctgagaaaat gctctgatcc ttacttccct cttcttccca gagaggtcgt tccgacctga
     3541 ctggcccacc tccagggagc tggtagagtc ctgcatctca ccctctggct gggagcctct
     3601 ctggttctct gctaaggtcg cttgccctca ctgttgctcc agtggccacc acttgactca
     3661 tgagttctgc ccctccactc tgtgccctcc agaggggcac ctgcatgcac tgggagtggg
     3721 cagccagcct agccatcagg gcaagagccc tctgccatgc gctttgtgcc tccaaaactc
     3781 ccccaccttg gctggggcct cagaccagcc atccttggtg gaacatccct accccagctg
     3841 aaccaaaccc aaatgcctga ggcctcgctg gggctgcccc ataggacact ggggtggtac
     3901 catggagaga caggggataa aactgatcca aagccacgcc aggactggcc acggacccag
     3961 cctcctgcgc cgtgtactcg tggagctcca catgtctccc tagcaacagt cgaagctctg
     4021 ctgagaaaat aaatgtatga actatatttg acaacataaa atccatatat ttttcaccac
     4081 tggcatttag tccaactttg cagcccctct gttccatgtc ttgctgtctg ggcattcttg
     4141 tcgtgtctcg tgtttggtgg acttgggcag ggctaggact gtggtctacc ctgttcctgc
     4201 tgctggagaa gccattgaaa agggtccagg tttgtagagg catcaagtgg aactggccac
     4261 caccctgctt ctgctgtgac cctaaccctg cctatgtgat caccagagga cctcacctac
     4321 agcagaggtc ctctctttct cgtgagttct gcctctcaga agggctctgc tccttgccag
     4381 agcaagtgga gtgagcagcc cattacccag ccctgggatg acctgtgaac cctgcaggct
     4441 ggggtaatgg ccctatcctt aagtttatat aagcccagag tcccatatcc gtacaaaggg
     4501 gttgcaatgc ccgtgcaatc ctaagaggta ggcttggaag tagacacttg agcagcctgc
     4561 tggttccaga tatggagaag ggggctgaga gcaaggtgga actgggccag gctcccctta
     4621 gatgctcatc cctaaagctc tccccatccc ataggctgca attttccctc ttgcccttgg
     4681 ctcctggagc aaaaatgtta agggtgctcc tttcccctgc ctccagtcag agcacacaag
     4741 gtcttgagga agtgtcccca ggaactacct tctactgggc ccttggagcc cagtggcttg
     4801 aagtagtggc tcctttgttt tggagccctc tgatggggtt cagtgaggat ttctgaacag
     4861 aggcaacgtt gaacagagtt catgatcaat gtgttcaagc aggtagcata catagctttt
     4921 cactgagact cctcttcacc tatacaggca caggacaaca aatcccaggc tttagggcca
     4981 aaggctactg aggggtctcc acccaaggaa ctcacagccc tcctctgatc taggtgacaa
     5041 tgtaaacagg ccactgcgca ctcatattag gctatcctct tgacaggaac ttcaggggac
     5101 agaggaggag gcctgtggga aggggtcata actctcggtc tcctttgtct ctttattcag
     5161 acagagttgt gcctgtagca gacagctctg aattaaagca tgaacacgca cacagc
//
