LOCUS       XM_011239538            4610 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus syntaphilin (Snph), transcript variant X5,
            mRNA.
ACCESSION   XM_011239538
VERSION     XM_011239538.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000068.8) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 8, 2019 this sequence version replaced XM_011239538.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4610
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="2"
     gene            1..4610
                     /gene="Snph"
                     /gene_synonym="6430515A01; mKIAA0374"
                     /note="syntaphilin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 mRNAs, 19 ESTs, 416
                     long SRA reads, 1 Protein, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     5 samples with support for all annotated introns"
                     /db_xref="GeneID:241727"
                     /db_xref="MGI:MGI:2139270"
     CDS             161..1747
                     /gene="Snph"
                     /gene_synonym="6430515A01; mKIAA0374"
                     /codon_start=1
                     /product="syntaphilin isoform X3"
                     /protein_id="XP_011237840.1"
                     /db_xref="GeneID:241727"
                     /db_xref="MGI:MGI:2139270"
                     /translation="MAMSLQGSRRASAGSRSGGTLGRSGLAVFAQCPQVPASQNEQRP
                     LLPASRRTSPPVSVRDAYGTSSLSSSSNSGSCKGSDSSPTPRRSMKYTLCSDNHGIKP
                     PTPEQYLTPLQQKEVCIRHLKARLKDTQDRLQDRDTEIDDLKTQLSRMQEDWIEEECH
                     RVEAQLALKEARKEIRQLKQVIDTVKNNLIDKDKGLQKYFVDINIQNKKLETLLHSME
                     VAQNGVAKEEGTGESAGGSPARSLTRSSTYTKLSDPAVCGDRQPGDPSNTSAEDGADS
                     GYVAADDTLSRTDALEASSLLSSGVDCGLEEASLHSSFNLGPRFPASNTYEKLLCGME
                     AGVQVSCMQERAIQTDFVQYQPDLNTILEKVGQAQVCGSVLKDRHSELDPHPSGPRDP
                     DSAVVVTVGDELEAPEPITCGPATHRPAVNSNPGLPVSVVCPVEEEEEEAAAATTTEK
                     EPKSYWSRHYIVDLLAVVVPAVPTVAWLCRSQRRQGQPIYNISSLLRGCCTVALHSIR
                     RISCRSLGQPSSSTAGGSQL"
ORIGIN      
        1 ctgctgcagc gactgcagag gcgctgcgcc aagcggcgcg ggagtcgtgc gagccggccg
       61 gactgcggag ggcgagtgga cccagggctg ttgggagaaa tcaatggcgt gatccccggg
      121 aacaccgccc attccgccgc tcaccaggac ccgcagcctc atggccatgt ccctgcaggg
      181 aagtagacga gcctctgccg gatctcgcag cgggggcact ttaggccgta gcggcctggc
      241 agtgttcgcc cagtgcccac aggtgcccgc cagccagaat gagcagcggc ctcttctccc
      301 cgcctccagg cgcacctctc cacctgtgag tgtgcgggac gcctacggca cctcttccct
      361 cagcagcagc agcaactctg gctcctgcaa gggcagtgac agcagcccca caccgaggcg
      421 ctccatgaag tacacactat gcagcgacaa tcacggcatc aagcctccca ccccagaaca
      481 gtatctgact ccactgcaac agaaggaggt ttgcatccgg cacctgaagg cccggctcaa
      541 ggacacacag gaccggctcc aggataggga cacggagatc gatgacctta agacgcagct
      601 gtcccgcatg caagaggact ggattgagga ggagtgccac cgcgtagaag cacagctggc
      661 cctgaaagag gcccgcaagg agatccggca gctcaagcag gtcatcgaca ctgtcaagaa
      721 caacctgatt gacaaggaca aggggctgca gaagtacttt gtggacatca atatccagaa
      781 caagaagctg gagaccttgc tgcacagcat ggaggtggcc cagaatggag tcgccaagga
      841 ggaaggaaca ggggagtcag caggtgggtc tcctgcacgg tccctcaccc gcagctccac
      901 ctacaccaag ctgagtgacc cagccgtctg tggtgaccgc cagccagggg atccctccaa
      961 cacctctgcc gaggatggag ctgatagtgg atatgtggct gccgatgaca ccctgagtcg
     1021 gacggacgcc ctggaggcca gtagcctact gtcatcagga gtggactgtg gccttgagga
     1081 agcctcgctg cacagctcct tcaacctggg cccccgcttc cctgccagca acacctacga
     1141 gaagctgctg tgcggcatgg aggctggtgt gcaggtcagc tgcatgcagg agcgggccat
     1201 ccagacagac tttgtgcagt accagcctga cctgaacacc atcctggaga aagtgggcca
     1261 ggctcaggtg tgcggttcag tcctcaaaga caggcactca gagctggatc cccacccttc
     1321 agggcccaga gaccctgact cagcagtggt agtcacagta ggtgacgagc ttgaggcccc
     1381 agagcccatc acctgtgggc cagccacaca ccggcctgca gtcaactcta acccaggact
     1441 gcccgtgagt gtggtgtgtc ccgtggaaga ggaggaggag gaggcagccg ctgccaccac
     1501 caccgaaaag gaacccaaga gttactggag ccgccactac atcgtggatc tgctggctgt
     1561 ggtagtgcca gctgtgccaa cagtggcctg gctctgccgc tcccagcggc gtcagggcca
     1621 gcccatttac aacatcagct ccctgctgcg gggttgctgc acggtggcct tgcactccat
     1681 ccgtaggatc agctgccgct cactgggcca gccgagctcc agcacagccg gtggctctca
     1741 gctctgaggc tgccggctct ccactcctgg cagcctgacc attgattgta ggatgccatt
     1801 tgctgcccca cacccacacc cacacccatc cccttttggc ttcctcttat atactttcag
     1861 gtctggaata gcgccccaac ccaagatgtc aatagtgtca gggattcaga aagtcatccc
     1921 aaaacttgga gagaaaaggt taaaatggct aattgaagag ggagaaactg ctaagagctt
     1981 cccccctctg tcccctctgt ccacccagac tttagacaag gcaggccctg ctcaaaatgt
     2041 ctctggctgt attgatctga ggatcctccc ctcttttgaa ccattccttc catcacctgg
     2101 cccaccccat gccttctctt ccaggccacc ccttgcccct ctccttgggc tcccggacca
     2161 gtattacctc ctcaaatgga ggcagccagg acccagaaca cagagagcca ctcccagcag
     2221 ggtctggctt ccctggtccc actgaggctc cagctctcct cccttgccct gggatgcaaa
     2281 agtatggtcc agctggaatg accagctcag gcaggagggt aggttctgtg tctgtctgtc
     2341 tgtcctcttg gcttctgggt gtgttagatc tttgtgagat gtccaatgcc catcactact
     2401 aacacgctta ccatgggagt ggagggagcc cttacccaag ccccagcttc ctttgggcaa
     2461 atctgccagc acagagaagg caaggctagc agctctaggg cacccttcac cttctgagat
     2521 gagtccacct catctgtagc ctagaggtac ctcagtgagt tgggaaagtc agaggccact
     2581 tacccaggct ccattggctc caagccctga ctacatttgc actcagtttc ctgaaggact
     2641 ttgtttcctg cccaccccag aaaccccagg ctgcttgttt tctgggacga gggcttctct
     2701 catggagctg acttcagagg aatatggcca tcagggggca cctccagatg ggtttctgaa
     2761 gtcacatcgt ctgcctgtct atgccaaagc agagtctctg agtgtgcttc ccaagtaggg
     2821 gcatggccag gtggtgggag cctgtctgtg ctgctcctgg tccaggcccc gtcagcctga
     2881 gaaaatgctc tgatccttac ttccctcttc ttcccagaga ggtcgttccg acctgactgg
     2941 cccacctcca gggagctggt agagtcctgc atctcaccct ctggctggga gcctctctgg
     3001 ttctctgcta aggtcgcttg ccctcactgt tgctccagtg gccaccactt gactcatgag
     3061 ttctgcccct ccactctgtg ccctccagag gggcacctgc atgcactggg agtgggcagc
     3121 cagcctagcc atcagggcaa gagccctctg ccatgcgctt tgtgcctcca aaactccccc
     3181 accttggctg gggcctcaga ccagccatcc ttggtggaac atccctaccc cagctgaacc
     3241 aaacccaaat gcctgaggcc tcgctggggc tgccccatag gacactgggg tggtaccatg
     3301 gagagacagg ggataaaact gatccaaagc cacgccagga ctggccacgg acccagcctc
     3361 ctgcgccgtg tactcgtgga gctccacatg tctccctagc aacagtcgaa gctctgctga
     3421 gaaaataaat gtatgaacta tatttgacaa cataaaatcc atatattttt caccactggc
     3481 atttagtcca actttgcagc ccctctgttc catgtcttgc tgtctgggca ttcttgtcgt
     3541 gtctcgtgtt tggtggactt gggcagggct aggactgtgg tctaccctgt tcctgctgct
     3601 ggagaagcca ttgaaaaggg tccaggtttg tagaggcatc aagtggaact ggccaccacc
     3661 ctgcttctgc tgtgacccta accctgccta tgtgatcacc agaggacctc acctacagca
     3721 gaggtcctct ctttctcgtg agttctgcct ctcagaaggg ctctgctcct tgccagagca
     3781 agtggagtga gcagcccatt acccagccct gggatgacct gtgaaccctg caggctgggg
     3841 taatggccct atccttaagt ttatataagc ccagagtccc atatccgtac aaaggggttg
     3901 caatgcccgt gcaatcctaa gaggtaggct tggaagtaga cacttgagca gcctgctggt
     3961 tccagatatg gagaaggggg ctgagagcaa ggtggaactg ggccaggctc cccttagatg
     4021 ctcatcccta aagctctccc catcccatag gctgcaattt tccctcttgc ccttggctcc
     4081 tggagcaaaa atgttaaggg tgctcctttc ccctgcctcc agtcagagca cacaaggtct
     4141 tgaggaagtg tccccaggaa ctaccttcta ctgggccctt ggagcccagt ggcttgaagt
     4201 agtggctcct ttgttttgga gccctctgat ggggttcagt gaggatttct gaacagaggc
     4261 aacgttgaac agagttcatg atcaatgtgt tcaagcaggt agcatacata gcttttcact
     4321 gagactcctc ttcacctata caggcacagg acaacaaatc ccaggcttta gggccaaagg
     4381 ctactgaggg gtctccaccc aaggaactca cagccctcct ctgatctagg tgacaatgta
     4441 aacaggccac tgcgcactca tattaggcta tcctcttgac aggaacttca ggggacagag
     4501 gaggaggcct gtgggaaggg gtcataactc tcggtctcct ttgtctcttt attcagacag
     4561 agttgtgcct gtagcagaca gctctgaatt aaagcatgaa cacgcacaca
//
