LOCUS       NM_009223               2919 bp    mRNA    linear   ROD 11-DEC-2024
DEFINITION  Mus musculus stannin (Snn), mRNA.
ACCESSION   NM_009223 NM_025477
VERSION     NM_009223.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2919)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2919)
  AUTHORS   Ballif,B.A., Villen,J., Beausoleil,S.A., Schwartz,D. and Gygi,S.P.
  TITLE     Phosphoproteomic analysis of the developing mouse brain
  JOURNAL   Mol Cell Proteomics 3 (11), 1093-1101 (2004)
   PUBMED   15345747
REFERENCE   3  (bases 1 to 2919)
  AUTHORS   Dejneka,N.S., Polavarapu,R., Deng,X., Martin-DeLeon,P.A. and
            Billingsley,M.L.
  TITLE     Chromosomal localization and characterization of the stannin (Snn)
            gene
  JOURNAL   Mamm Genome 9 (7), 556-564 (1998)
   PUBMED   9657854
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY277718.1, CJ166486.1, AC164093.2 and AI848521.1.
            
            On Oct 6, 2007 this sequence version replaced NM_009223.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC006961.1, BC063027.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-104               BY277718.1         2-105
            105-515             CJ166486.1         57-467
            516-2513            AC164093.2         172430-174427
            2514-2919           AI848521.1         1-406               c
FEATURES             Location/Qualifiers
     source          1..2919
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="16"
                     /map="16 6.32 cM"
     gene            1..2919
                     /gene="Snn"
                     /gene_synonym="2810407J07Rik"
                     /note="stannin"
                     /db_xref="GeneID:20621"
                     /db_xref="MGI:MGI:1276549"
     exon            1..150
                     /gene="Snn"
                     /gene_synonym="2810407J07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            151..2904
                     /gene="Snn"
                     /gene_synonym="2810407J07Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             238..504
                     /gene="Snn"
                     /gene_synonym="2810407J07Rik"
                     /codon_start=1
                     /product="stannin"
                     /protein_id="NP_033249.1"
                     /db_xref="CCDS:CCDS37255.1"
                     /db_xref="GeneID:20621"
                     /db_xref="MGI:MGI:1276549"
                     /translation="MSIMDHSPTTGVVTVIVILIAIAALGALILGCWCYLRLQRISQS
                     EDEESIVGDGETKEPFLLVQYSAKGPCVERKAKLMTANSPEVHG"
     regulatory      2806..2811
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Snn"
                     /gene_synonym="2810407J07Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2833
                     /gene="Snn"
                     /gene_synonym="2810407J07Rik"
     regulatory      2877..2882
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Snn"
                     /gene_synonym="2810407J07Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2904
                     /gene="Snn"
                     /gene_synonym="2810407J07Rik"
                     /note="major polyA site"
ORIGIN      
        1 aatcagggcg gagcccaagc acctcgcccc ctgctgatcg ggctctggcg tctggcgagg
       61 gctccgcggc cgacccggct ggcgcgcagg cggagccggg gcggcggggc tgctgctggc
      121 taattgcaca ggactgcggg ccgcgacatg gactgtcctg tgcagcccga attccagcct
      181 cgttgagcca ggcacaccaa gagctttcca ccaaagaagc ccctccaagc actgaccatg
      241 tctattatgg accacagccc caccaccggg gtggtaacgg tcattgtcat cctcatcgcc
      301 atagctgccc tgggggcctt gatcctgggc tgctggtgct acctgcggct gcagcgcatc
      361 agccagtcag aggatgagga gagcatcgtg ggtgatggcg agacaaagga gccctttcta
      421 ctggtgcagt actctgctaa ggggccatgt gtggaaagaa aggccaagtt gatgaccgcc
      481 aacagcccag aagtgcatgg ctgagctggg ctgtgaaggc caaggccatg gttctgtttg
      541 cagccagccc agaagcactg agagggtgga agcagacacg ttgctctgtg agaggggttg
      601 acacttgctg gcatggtctc ctcgggcttt gtcatcgcat gcactggctc caggtcccag
      661 ctcttctggc cttccccctc cgcctcctgg tgggctgtcc attgcaggca gtgggcaggc
      721 ctgaccttgc tggggctcct ggccccttag cgctttcctt acttgaatgt tttagctgag
      781 cctgtttttg atggagctac tactgtaatg cgtgaactaa ccaacctgtg aactgtaaat
      841 aggcccagaa gcacgtgctt aagccttttt gctgattttt ttaaaatacc agatggagcc
      901 cgtggactgg cttgataatg actgtactca acgtaagctg aggtacgacc atggagggtc
      961 ttggactggt caggccccag ttgccctcgg cagggtgcac tgaggcctta gtgatgcgta
     1021 tggaaaggag gttaagaagc tggggtgttg gggtaatctc agcttgcttc gtaatggagg
     1081 aaaaccacac cccacccctc cctttctcta gttcagcttt gttaaaagag cagtgtgtgt
     1141 agacggcgga gtcactgcaa ggaagctgtt gcgcttgctt ggaagcctgt gaaggatgag
     1201 acctcatgag tcctgagggt tgccaggcag cttggcagag cagtctcttg ccctttggtt
     1261 ttgagcatgc ccagtacacc ccttcagccc aggctttgca gaaactgctc tggtcctctg
     1321 cagacaccag agcctgtgga ggctacttga agtctgaaac ccagttggct caagaagaca
     1381 aggttttgtt tttgtattta atattttctg cactggaatg ggggttgggg gtaggagtgg
     1441 ctccctcccc cccccccccc cccgcacatc cccacacccc accttttcac aagtgagctt
     1501 cctttcttct ccagtgggta ttgggtttta ctttgatcct tggggctttg tagtcagagc
     1561 ttcctgacac agctctcaag gcactctgtg ctatagaagg tcatttctat tgtgcacata
     1621 gcatttacaa gagtcaccaa gagttcaggt tcagggcctg gttctcacag gtaagggaac
     1681 cagcaacatg tctccaggat atttcttatg tctataagct tgctcagatg ttaatcccat
     1741 caccgtaagc attctgaacc attatgatta aacctgacta tgctggtacc cttggtgatg
     1801 cagagagcag agagctccag gctagtctgg agacagcttt gaaaagcatg tgaaactaat
     1861 ccatttccta gaacccgagg gaggagctgt agggaaggaa cacttcttag cagtgtatac
     1921 caatatgggg ttgggaggca gatgttaaac accttagtta cacagaggta gtcaaagatg
     1981 gactggccat ggacagaggc tgctaaggag ttcttggatg tgtgttagtc ctgggagcag
     2041 tgactctgta ggtctaggag gggaacagaa ggtatcaaag gatctacctg gagttggctg
     2101 aggcggaggg gttttaccga ttcccacccc acatccacct ttctacctcc tacgtcttgc
     2161 agccagcagc ctaaacactg ctgattcttt tctccatcat ccatggatcc aaggccagct
     2221 tggatctaca ccgaaatttg agctggttca tcgctgcagg gtcagatgca ggccgcagct
     2281 tgtactatgc tgatgaagtt ggcttttcaa acagacatca ccacattctt atcagttaca
     2341 ctttggggga gcttcctatc accccctgtt gccagggggt ctttcaagtt tgagtcagtc
     2401 catccagaga gggacgagta agttcaggca ctgtggggca ttggtgaggt catatggaga
     2461 acgaacacct atagaactgt tgaacaacca tgcaagtctt ccctgtcctt ggctatcact
     2521 ggctaccttt ttaagtgtat accagagccg tacactccaa tggttagtaa gtcataactt
     2581 ctcttcagat ttttttccca atagtgtaac tattgagggt cagggtcagg tcttctgatg
     2641 gttacgaagc tagcctttca tcctggggag cttgcaggaa ctccgaggct aagccactga
     2701 agcaagaact gactttccta gatatatgtt caaatggact gtgctactgc tgtgtctcaa
     2761 agctaccagt gtgtgcaata agtggaaggg atgccattcc tgatcaataa atgctaaatg
     2821 acattcgagt tcattttgta gaccactgag aaagatcttt atttacaata aatttcaata
     2881 aaatttgcat aactatattc ccaaaaaaaa aaaaaaaaa
//
