LOCUS       XM_036160757            4273 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus small nuclear RNA activating complex,
            polypeptide 4 (Snapc4), transcript variant X22, mRNA.
ACCESSION   XM_036160757
VERSION     XM_036160757.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000068.8) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4273
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="2"
     gene            1..4273
                     /gene="Snapc4"
                     /gene_synonym="5730436L13Rik"
                     /note="small nuclear RNA activating complex, polypeptide
                     4; Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 23 ESTs, 162 long SRA reads, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 25 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:227644"
                     /db_xref="MGI:MGI:2443935"
     CDS             1982..3997
                     /gene="Snapc4"
                     /gene_synonym="5730436L13Rik"
                     /codon_start=1
                     /product="snRNA-activating protein complex subunit 4
                     isoform X14"
                     /protein_id="XP_036016650.1"
                     /db_xref="GeneID:227644"
                     /db_xref="MGI:MGI:2443935"
                     /translation="MKERPKQPLLPSSRSGSDPGNNTAGPHLRQLWHGTYQNKQRRKR
                     QALHRRLLKHRLLLAVIPWVGDINLACTQAPRRPATVQTKADSIRMQLECARLASTPV
                     FTLLIQLLQIDTAGCMEVVRERKSQPPALLQPGTRNTQPHLLQASSNAKNNTGCLPSM
                     TGEQTAKRASHKGRPRLGSCRTEATPFQVPVAAPRGLRPKPKTVSELLREKRLRESHA
                     KKATQALGLNSQLLVSSPVILQPPLLPVPHGSPVVGPATSSVELSVPVAPVMVSSSPS
                     GSWPVGGISATDKQPPNLQTISLNPPHKGTQVAAPAAFRSLALAPGQVPTGGHLSTLG
                     QTSTTSQKQSLPKVLPILRAAPSLTQLSVQPPVSGQPLATKSSLPVNWVLTTQKLLSV
                     QVPAVVGLPQSVMTPETIGLQAKQLPSPAKTPAFLEQPPASTDTEPKGPQGQEIPPTP
                     GPEKAALDLSLLSQESEAAIVTWLKGCQGAFVPPLGSRMPYHPPSLCSLRALSSLLLQ
                     KQDLEQKASSLAASQAAGAQPDPKAGALQASLELVQRQFRDNPAYLLLKTRFLAIFSL
                     PAFLATLPPNSIPTTLSPDVAVVSESDSEDLGDLELKDRARQLDCMACRVQASPAAPD
                     PVQSHLVSPGQRAPSPGEVSAPSPLDASDGLDDLNVLRTRRARHSRR"
ORIGIN      
        1 cctactgact tccgcgactg ctagaagcat gatctgcgtg tggtcgcccg ggcgatgatg
       61 ccagctgtga agtttggaag ggatgcctag aaggctgaag ccatggacat agacgccgaa
      121 cgagagaaaa taacacagga gatccaggag cttgaaagga ttttgtatcc tggatccacc
      181 agcgtccact ttgaagtctc tgaatccagt ctcagttcag actctgaagc agattcgctg
      241 cctgatgagg acttggaaac tgctggtgcc cccatcttgg aagaggaagg gtcgagtgag
      301 agcagcaatg atgaggagga ccccaaggac aaagctctcc ctgaagaccc cgagacctgt
      361 ctgcagctaa atatggtcta ccaggaggtg atccgggaaa agctagcaga ggttagccag
      421 ttgctagccc agaaccagga gcagcaggaa gagatcctgt ttgatctgtc tggaaccaaa
      481 tgccccaagg tgaaggatgg cagaagtctg ccctcataca tgtacatagg ccacttcctg
      541 aagccatact tcaaggacaa ggttactgga gtgggaagca ctgggagaaa gccttgctca
      601 ggaagtctgt agtgagtgac cgcctacaac gtctgcttca gcccaaattg ctgaagctgg
      661 agtacttaca cgaaaaacag agccgagtct ccagtgagtt ggaaaggcag gccctggaga
      721 agcagattaa ggaagcagag aaggagattc aggacatcaa ccagctccca gaggaagcat
      781 tgttggggaa ccggctagac agccacgact gggagaagat ttccaatatt aactttgaag
      841 gagcccgcag tgcagaggag atccggaagt tctggcagag ttctgagcat ccaagcatca
      901 gtaagcagga atggagcaca gaagaagtag agaggctgaa ggccatcgct gccacacatg
      961 gccacctgga gtggcacttg gttgcagagg aacttgggac aagccgcagt gcctttcagt
     1021 gcctgcagaa attccagcag tacaacaaaa ccctgaaacg caaggagtgg acagaagagg
     1081 aagaccacat gctcacccag ctggtccaag agatgcgagt tgggaaccat atcccatacc
     1141 gcaagatcgt ctacttcatg gaagggagag actccatgca gctgatctac cgttggacca
     1201 agagcttaga tcccagcctg aaaaggggat tctgggcccc agaggaagat gctaaattgc
     1261 ttcaagctgt tgccaagtat ggggcgcagg actggtttaa aatccgggaa gaggtgccag
     1321 ctacatcaga agattacatt tcagcttgaa aaagggacgg tggaatgcaa aagaagaaca
     1381 acagctgatc cagctaatag agaaatatgg tgttggtcac tgggcaagaa tcgcttctga
     1441 attgccccat cggtcaggct cccagtgtct gagcaagtgg aagatcttgg ccaggaagaa
     1501 acagcatctg cagaggaaga gagggcagag gccccgtcac agtagccagt ggagctctag
     1561 cggcagcagc agcagcagca gtgaagacta cggcagcagc agtggcagcg acggcagcag
     1621 cggcagtgaa aactcagatg tggagctgga ggcgtctctg gagaagagta gagcactgac
     1681 tcctcaacag tacagagtgc cagacattga cctgtgggtt cctaccaggc tgatcaccag
     1741 ccagtcacag agagaaggga cagggtgcta cccacaacac cctgctgtct cctgctgcac
     1801 tcaggatgcc tctcaaaatc accacaagga aggttctacc accgtctctg ctgctgagaa
     1861 aaaccagctg caggtgccct atgagaccca cagcactgtt ccaagaggag accggttcct
     1921 acacttctcg gacacccact cagcaagttt gaaggatccg gcctgcaaga gtcacacact
     1981 gatgaaggaa agaccgaagc agccactcct ccctagttca cgctcagggt ctgaccctgg
     2041 caacaatacg gctgggcccc atctgcggca gctatggcat ggaacttacc agaataagca
     2101 gagacgcaag agacaggctc tacatcgcag gctccttaag cacaggcttt tgctggctgt
     2161 gataccctgg gtgggtgaca tcaacctggc ctgcacacaa gctccccgga gacctgcaac
     2221 cgttcagact aaagctgaca gcatccggat gcagttagag tgtgcccgcc tggccagcac
     2281 tccggtattc acactgctta ttcagctatt gcagattgat actgcgggct gcatggaggt
     2341 ggttcgagag aggaaaagcc agccccctgc actgctccag cctggcaccc ggaacaccca
     2401 gccgcatctc ctgcaggcat cctctaatgc caagaacaac acaggctgcc tcccaagcat
     2461 gacgggggaa caaactgcaa agagagccag ccacaaaggg cgcccacgac tggggtcatg
     2521 caggactgag gctaccccct tccaagtccc tgtagcagcc ccacgtggcc tccggccaaa
     2581 gcctaagact gtttctgagc tgcttcggga gaagcggctc cgtgagtccc atgccaagaa
     2641 ggccactcag gctcttggtc tcaacagcca gctgctggtc tcctcacctg tgatcctcca
     2701 gccccctctg ctgccagtcc cccatggttc cccagtagta ggccctgcaa cgtccagtgt
     2761 agaactctct gtacctgtgg cgccggtgat ggtcagttca agtccttctg gctcctggcc
     2821 ggtgggtggg atctcagcca cagacaagca gccccccaac ctacagacca tttccctaaa
     2881 tcctccccac aaagggaccc aggttgcagc ccctgctgct tttaggagcc tagccttagc
     2941 ccccgggcaa gtccccacag gcggccatct gagtactcta ggacagacct ctaccacatc
     3001 ccagaagcag agcctgccca aggtcctgcc cattcttcga gctgctccca gcctcactca
     3061 gctgtctgtg cagccaccag taagtggaca gcccctggca accaagtcca gcctgcctgt
     3121 caactgggtt ctcacaactc agaagttgct ctctgtccaa gtgccagctg tggtgggcct
     3181 cccccagtca gtgatgaccc ctgagaccat aggactacaa gcaaaacagc tgccttcccc
     3241 tgccaagact cctgcttttc tggaacagcc tccagccagt acagacacag aacccaaggg
     3301 acctcagggc caggaaatac cacccacacc tgggcccgaa aaggcagctt tggacctaag
     3361 tctcctttcc caggaaagtg aggcagccat cgtcacatgg ctgaaggggt gccaaggtgc
     3421 ttttgtaccc ccgctgggga gcaggatgcc ctatcatccc ccttccctgt gcagcttgcg
     3481 ggcattgtcc agcctcctcc tccagaaaca ggacttggag cagaaggctt cctctctggc
     3541 ggccagccag gcagctgggg cccaacctga tcccaaggct ggagccctac aagcttccct
     3601 ggagctggta cagaggcaat tccgggacaa cccagcctac ctcctgctaa agacgcgttt
     3661 cctggctatc ttctcccttc ctgcattcct ggccactctg ccccccaaca gcatccccac
     3721 caccctgtca ccagacgtgg ctgtggtttc tgagagtgac agtgaagacc tcggtgactt
     3781 ggagctcaag gatagggcta gacagttgga ctgcatggcc tgcagagtgc aagcaagccc
     3841 agcagcccca gaccctgtac agagccacct tgtctcccct ggtcagagag ctccaagtcc
     3901 tggtgaggtt tctgctccct cccctctgga tgcttctgat ggccttgatg accttaacgt
     3961 gctcaggact cgacgtgctc ggcattcccg gagatagagg ttgctttgag cagcaaggac
     4021 aaggcgtcaa ggggtccaga atccagctct cactaggcaa gaggcagggc ccaagcctgc
     4081 ccagaagcag tacacaaccc tcagcaagaa gacgggaagc cagaaagctg caggctgagg
     4141 accaagctgt cggtagcgat ctacaggctg tggtgatagc agtggccacg tgatcacagg
     4201 ctacctgtta acagacttgg ggccgtgtat gtgagggaat aaaggaaatg cctaattttc
     4261 acttaaaaag caa
//
