LOCUS       XM_030249765            4906 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus small nuclear RNA activating complex,
            polypeptide 4 (Snapc4), transcript variant X21, mRNA.
ACCESSION   XM_030249765
VERSION     XM_030249765.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000068.8) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_030249765.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4906
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="2"
     gene            1..4906
                     /gene="Snapc4"
                     /gene_synonym="5730436L13Rik"
                     /note="small nuclear RNA activating complex, polypeptide
                     4; Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 24 ESTs, 164 long SRA reads, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 31 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:227644"
                     /db_xref="MGI:MGI:2443935"
     CDS             2615..4630
                     /gene="Snapc4"
                     /gene_synonym="5730436L13Rik"
                     /codon_start=1
                     /product="snRNA-activating protein complex subunit 4
                     isoform X14"
                     /protein_id="XP_030105625.1"
                     /db_xref="GeneID:227644"
                     /db_xref="MGI:MGI:2443935"
                     /translation="MKERPKQPLLPSSRSGSDPGNNTAGPHLRQLWHGTYQNKQRRKR
                     QALHRRLLKHRLLLAVIPWVGDINLACTQAPRRPATVQTKADSIRMQLECARLASTPV
                     FTLLIQLLQIDTAGCMEVVRERKSQPPALLQPGTRNTQPHLLQASSNAKNNTGCLPSM
                     TGEQTAKRASHKGRPRLGSCRTEATPFQVPVAAPRGLRPKPKTVSELLREKRLRESHA
                     KKATQALGLNSQLLVSSPVILQPPLLPVPHGSPVVGPATSSVELSVPVAPVMVSSSPS
                     GSWPVGGISATDKQPPNLQTISLNPPHKGTQVAAPAAFRSLALAPGQVPTGGHLSTLG
                     QTSTTSQKQSLPKVLPILRAAPSLTQLSVQPPVSGQPLATKSSLPVNWVLTTQKLLSV
                     QVPAVVGLPQSVMTPETIGLQAKQLPSPAKTPAFLEQPPASTDTEPKGPQGQEIPPTP
                     GPEKAALDLSLLSQESEAAIVTWLKGCQGAFVPPLGSRMPYHPPSLCSLRALSSLLLQ
                     KQDLEQKASSLAASQAAGAQPDPKAGALQASLELVQRQFRDNPAYLLLKTRFLAIFSL
                     PAFLATLPPNSIPTTLSPDVAVVSESDSEDLGDLELKDRARQLDCMACRVQASPAAPD
                     PVQSHLVSPGQRAPSPGEVSAPSPLDASDGLDDLNVLRTRRARHSRR"
ORIGIN      
        1 cctactgact tccgcgactg ctagaagcat gatctgcgtg tggtcgcccg ggcgatgatg
       61 ccagctgtga agtttggaag ggatgcctag aaggcaggct gaagccatgg acatagacgc
      121 cgaacgagag aaaataacac aggagatcca ggagcttgaa aggattttgt atcctggatc
      181 caccagcgtc cactttgaag tctctgaatc cagtctcagt tcagactctg aagcagattc
      241 gctgcctgat gaggacttgg aaactgctgg tgcccccatc ttggaagagg aagggtcgag
      301 tgagagcagc aatgatgagg aggaccccaa ggacaaagct ctccctgaag accccgagac
      361 ctgtctgcag ctaaatatgg tctaccagga ggtgatccgg gaaaagctag cagaggttag
      421 ccagttgcta gcccagaacc aggagcagca gagatcctgt ttgatctgtc tggaaccaaa
      481 tgccccaagg tgaaggatgg cagaagtctg ccctcataca tgtacatagg ccacttcctg
      541 aagccatact tcaaggacaa ggttactgga gtggggcctc ctgccaacga agaaacacgg
      601 gagaaggcta cccagggaat caaggccttt gaacagctct tggtgaccaa gtggaagcac
      661 tgggagaaag ccttgctcag gaagtctgta gtgagtgacc gcctacaacg tctgcttcag
      721 cccaaattgc tgaagctgga gtacttacac gaaaaacaga gccgagtctc cagtgagttg
      781 gaaaggcagg ccctggagaa gcagattaag gaagcagaga aggagattca ggacatcaac
      841 cagctcccag aggaagcatt gttggggaac cggctagaca gccacgactg ggagaagatt
      901 tccaatatta actttgaagg agcccgcagt gcagaggaga tccggaagtt ctggcagagt
      961 tctgagcatc caagcatcag taagcaggaa tggagcacag aagaagtaga gaggctgaag
     1021 gccatcgctg ccacacatgg ccacctggag tggcacttgg ttgcagagga acttggggta
     1081 aagactagga cctgggagac cttagaaggg tgggaggaca tgggctgctg ggtcagtctc
     1141 atgctctgta gtgtggtgca cacagcaagc attactcatg ctctgtagtg tggtgcacac
     1201 agcaggcatt aggaattgtt tggtaaattt gcttttaaag aaatttgtct ctttcatctt
     1261 tttaacttta aatttcatta tgtctgtgaa aatatcaccc tttacctcaa actcttggca
     1321 cctctcctgc tttgggattg ggctgggatt aacaccagag ctgtctatgg ccaagttttc
     1381 tttctataag ccatagagtc ctctctgagc tgctcctgtc ctgggaccca accatggtct
     1441 agcaaactat cacctggtaa gagcctggag gaggcaggag agttctgctg tacagagcgc
     1501 tcgctgcctg tggctcaggc ccacctgtct tctggaagca cttgggtctc ctggaaggtt
     1561 gtgccaggta tttctgcacg tgcaaggtga agcccaataa tgcccacttg tttctctatg
     1621 tccttgggaa gacaagccgc agtgcctttc agtgcctgca gaaattccag cagtacaaca
     1681 aaaccctgaa acgcaaggag tggacagaag aggaagacca catgctcacc cagctggtcc
     1741 aagagatgcg agttgggaac catatcccat accgcaagat cgtctacttc atggaaggga
     1801 gagactccat gcagctgatc taccgttgga ccaagagctt agatcccagc ctgaaaaggg
     1861 gattctgggc cccagaggaa gatgctaaat tgcttcaagc tgttgccaag tatggggcgc
     1921 aggactggtt taaaatccgg gaagaggtgc cagctacatc agaagattac atttcagctt
     1981 gaaaaaggga cggtggaatg caaaagaaga acaacagctg atccagctaa tagagaaata
     2041 tggtgttggt cactgggcaa gaatcgcttc tgaattgccc catcggtcag gctcccagtg
     2101 tctgagcaag tggaagatct tggccaggaa gaaacagcat ctgcagagga agagagggca
     2161 gaggccccgt cacagtagcc agtggagctc tagcggcagc agcagcagca gcagtgaaga
     2221 ctacggcagc agcagtggca gcgacggcag cagcggcagt gaaaactcag atgtggagct
     2281 ggaggcgtct ctggagaaga gtagagcact gactcctcaa cagtacagag tgccagacat
     2341 tgacctgtgg gttcctacca ggctgatcac cagccagtca cagagagaag ggacagggtg
     2401 ctacccacaa caccctgctg tctcctgctg cactcaggat gcctctcaaa atcaccacaa
     2461 ggaaggttct accaccgtct ctgctgctga gaaaaaccag ctgcaggtgc cctatgagac
     2521 ccacagcact gttccaagag gagaccggtt cctacacttc tcggacaccc actcagcaag
     2581 tttgaaggat ccggcctgca agagtcacac actgatgaag gaaagaccga agcagccact
     2641 cctccctagt tcacgctcag ggtctgaccc tggcaacaat acggctgggc cccatctgcg
     2701 gcagctatgg catggaactt accagaataa gcagagacgc aagagacagg ctctacatcg
     2761 caggctcctt aagcacaggc ttttgctggc tgtgataccc tgggtgggtg acatcaacct
     2821 ggcctgcaca caagctcccc ggagacctgc aaccgttcag actaaagctg acagcatccg
     2881 gatgcagtta gagtgtgccc gcctggccag cactccggta ttcacactgc ttattcagct
     2941 attgcagatt gatactgcgg gctgcatgga ggtggttcga gagaggaaaa gccagccccc
     3001 tgcactgctc cagcctggca cccggaacac ccagccgcat ctcctgcagg catcctctaa
     3061 tgccaagaac aacacaggct gcctcccaag catgacgggg gaacaaactg caaagagagc
     3121 cagccacaaa gggcgcccac gactggggtc atgcaggact gaggctaccc ccttccaagt
     3181 ccctgtagca gccccacgtg gcctccggcc aaagcctaag actgtttctg agctgcttcg
     3241 ggagaagcgg ctccgtgagt cccatgccaa gaaggccact caggctcttg gtctcaacag
     3301 ccagctgctg gtctcctcac ctgtgatcct ccagccccct ctgctgccag tcccccatgg
     3361 ttccccagta gtaggccctg caacgtccag tgtagaactc tctgtacctg tggcgccggt
     3421 gatggtcagt tcaagtcctt ctggctcctg gccggtgggt gggatctcag ccacagacaa
     3481 gcagcccccc aacctacaga ccatttccct aaatcctccc cacaaaggga cccaggttgc
     3541 agcccctgct gcttttagga gcctagcctt agcccccggg caagtcccca caggcggcca
     3601 tctgagtact ctaggacaga cctctaccac atcccagaag cagagcctgc ccaaggtcct
     3661 gcccattctt cgagctgctc ccagcctcac tcagctgtct gtgcagccac cagtaagtgg
     3721 acagcccctg gcaaccaagt ccagcctgcc tgtcaactgg gttctcacaa ctcagaagtt
     3781 gctctctgtc caagtgccag ctgtggtggg cctcccccag tcagtgatga cccctgagac
     3841 cataggacta caagcaaaac agctgccttc ccctgccaag actcctgctt ttctggaaca
     3901 gcctccagcc agtacagaca cagaacccaa gggacctcag ggccaggaaa taccacccac
     3961 acctgggccc gaaaaggcag ctttggacct aagtctcctt tcccaggaaa gtgaggcagc
     4021 catcgtcaca tggctgaagg ggtgccaagg tgcttttgta cccccgctgg ggagcaggat
     4081 gccctatcat cccccttccc tgtgcagctt gcgggcattg tccagcctcc tcctccagaa
     4141 acaggacttg gagcagaagg cttcctctct ggcggccagc caggcagctg gggcccaacc
     4201 tgatcccaag gctggagccc tacaagcttc cctggagctg gtacagaggc aattccggga
     4261 caacccagcc tacctcctgc taaagacgcg tttcctggct atcttctccc ttcctgcatt
     4321 cctggccact ctgcccccca acagcatccc caccaccctg tcaccagacg tggctgtggt
     4381 ttctgagagt gacagtgaag acctcggtga cttggagctc aaggataggg ctagacagtt
     4441 ggactgcatg gcctgcagag tgcaagcaag cccagcagcc ccagaccctg tacagagcca
     4501 ccttgtctcc cctggtcaga gagctccaag tcctggtgag gtttctgctc cctcccctct
     4561 ggatgcttct gatggccttg atgaccttaa cgtgctcagg actcgacgtg ctcggcattc
     4621 ccggagatag aggttgcttt gagcagcaag gacaaggcgt caaggggtcc agaatccagc
     4681 tctcactagg caagaggcag ggcccaagcc tgcccagaag cagtacacaa ccctcagcaa
     4741 gaagacggga agccagaaag ctgcaggctg aggaccaagc tgtcggtagc gatctacagg
     4801 ctgtggtgat agcagtggcc acgtgatcac aggctacctg ttaacagact tggggccgtg
     4861 tatgtgaggg aataaaggaa atgcctaatt ttcacttaaa aagcaa
//
